Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3C896G2 Lonicera japonica HOM05D005399 ORTHO05D006347 0.0e+00 2164.4 1080 100.0
Hma1.2p1_0094F.1_g047320 Hydrangea macrophylla HOM05D005399 ORTHO05D006347 0.0e+00 1182.9 1065 57.8
TAR629G1213 Trochodendron aralioides HOM05D005399 ORTHO05D006347 0.0e+00 1113.2 1066 55.6
Actinidia34263 Actinidia chinensis HOM05D005399 ORTHO05D006347 0.0e+00 1111.7 1066 55.5
vmacro06433 Vaccinium macrocarpon HOM05D005399 ORTHO05D006347 6.6e-311 1070.8 1091 53.0
Nn3g18028 Nelumbo nucifera HOM05D005399 ORTHO05D006347 8.2e-269 931.0 1068 47.5
Aqoxy5G00909 Aquilegia oxysepala HOM05D005399 ORTHO05D006347 2.9e-250 869.4 1067 46.1
DCAR_008979 Daucus carota HOM05D005399 ORTHO05D006347 1.7e-229 800.4 1052 44.5
AUR62035614 Chenopodium quinoa HOM05D005399 ORTHO05D006347 4.2e-225 785.8 1072 43.3
EL10Ac3g05189 Beta vulgaris HOM05D005399 ORTHO05D006347 6.8e-223 778.5 1066 42.4
Cfa016169 Carpinus fangiana HOM05D005399 ORTHO05D006347 2.0e-219 766.9 1058 43.4
PSO782G2701 Papaver somniferum HOM05D005399 ORTHO05D006347 1.0e-218 764.6 1057 44.8
Haze_00285 Corylus avellana HOM05D005399 ORTHO05D006347 4.7e-216 755.7 1051 43.6
QL09p007265 Quercus lobata HOM05D005399 ORTHO05D006347 4.9e-213 745.7 1058 43.8
TWI39G1122 Tripterygium wilfordii HOM05D005399 ORTHO05D006347 1.4e-212 744.2 1057 42.5
Thecc.03G207700 Theobroma cacao HOM05D005399 ORTHO05D006347 4.1e-212 742.7 1061 42.6
Rhsim03G0214700 Rhododendron simsii HOM05D005399 ORTHO05D006347 2.4e-204 716.8 1066 43.2
COL.COLO4_14362 Corchorus olitorius HOM05D005399 ORTHO05D006347 7.8e-203 711.8 1074 42.3
GSVIVG01038634001 Vitis vinifera HOM05D005399 ORTHO05D006347 1.6e-200 704.1 1059 41.4
CAN.G65.216 Capsicum annuum HOM05D005399 ORTHO05D006347 2.1e-200 703.7 1060 40.7
Sopen06g030090 Solanum pennellii HOM05D005399 ORTHO05D006347 6.2e-200 702.2 1060 40.7
ATR1089G058 Amborella trichopoda HOM05D005399 ORTHO05D006347 2.3e-199 700.3 1021 40.5
Potri.012G021900 Populus trichocarpa HOM05D005399 ORTHO05D006347 4.0e-199 699.5 1063 41.3
RcHm_v2.0_Chr4g0412561 Rosa chinensis HOM05D005399 ORTHO05D006347 4.0e-199 699.5 1057 41.9
Cc11_g00230 Coffea canephora HOM05D005399 ORTHO05D006347 3.4e-198 696.4 1054 40.1
CANSAT21G1620 Cannabis sativa HOM05D005399 ORTHO05D006347 5.8e-198 695.7 1064 42.2
Ciclev10018828m.g Citrus clementina HOM05D005399 ORTHO05D006347 1.3e-197 694.5 1066 40.1
Sabra12G0011800 Salix brachista HOM05D005399 ORTHO05D006347 8.3e-197 691.8 1061 40.7
Gorai.004G124900 Gossypium raimondii HOM05D005399 ORTHO05D006347 1.9e-196 690.6 1066 40.3
Sabra05G0139800 Salix brachista HOM05D005399 ORTHO05D006347 7.8e-195 685.3 1061 40.5
Gohir.D08G116000 Gossypium hirsutum HOM05D005399 ORTHO05D006347 1.7e-194 684.1 1066 40.1
MSTRG.26983 Avicennia marina HOM05D005399 ORTHO05D006347 3.1e-191 673.3 1058 40.7
FvH4_4g12930 Fragaria vesca HOM05D005399 ORTHO05D006347 3.4e-190 669.8 1058 40.9
FAN12G2064 Fragaria x ananassa HOM05D005399 ORTHO05D006347 1.3e-189 667.9 1058 40.8
Atru.chr12.2405 Acer truncatum HOM05D005399 ORTHO05D006347 2.2e-189 667.2 1037 40.9
Migut.F00156 Erythranthe guttata HOM05D005399 ORTHO05D006347 6.4e-189 665.6 1058 40.3
MD04G1021200 Malus domestica HOM05D005399 ORTHO05D006347 2.1e-187 660.6 1062 39.9
FAN07G0819 Fragaria x ananassa HOM05D005399 ORTHO05D006347 2.3e-186 657.1 1058 40.6
MD10G1005500 Malus domestica HOM05D005399 ORTHO05D006347 3.0e-186 656.8 1062 39.7
SGA_v2.0_scaffold18G08460 Striga asiatica HOM05D005399 ORTHO05D006347 7.6e-182 642.1 1058 38.7
Sc19g0000620 Simmondsia chinensis HOM05D005399 ORTHO05D006347 5.1e-178 629.4 1061 36.7
PGR102G0827 Punica granatum HOM05D005399 ORTHO05D006347 1.4e-175 621.3 1059 37.9
Sed0017875 Sechium edule HOM05D005399 ORTHO05D006347 9.0e-175 618.6 1056 37.6
Lsat_1_v5_gn_7_13681 Lactuca sativa HOM05D005399 ORTHO05D006347 5.4e-172 609.4 1055 39.1
HanXRQChr15g0470151 Helianthus annuus HOM05D005399 ORTHO05D006347 3.5e-171 606.7 1058 39.0
ECA236G2916 Erigeron canadensis HOM05D005399 ORTHO05D006347 1.8e-170 604.4 1047 38.4
CsaV3_2G029520 Cucumis sativus L. HOM05D005399 ORTHO05D006347 1.3e-168 598.2 1060 36.9
ClCG08G014290 Citrullus lanatus HOM05D005399 ORTHO05D006347 1.1e-167 595.1 1057 37.3
Hund09706 Selenicereus undatus HOM05D005399 ORTHO05D006347 1.1e-167 595.1 771 44.5
AUR62006012 Chenopodium quinoa HOM05D005399 ORTHO05D006347 1.8e-167 594.3 939 39.9
CiPaw.05G203600 Carya illinoinensis HOM05D005399 ORTHO05D006347 5.3e-167 592.8 854 42.0
HanXRQChr01g0023961 Helianthus annuus HOM05D005399 ORTHO05D006347 5.3e-167 592.8 1053 37.9
Lalb_Chr03g0034521 Lupinus albus HOM05D005399 ORTHO05D006347 9.0e-167 592.0 1064 36.7
Sp5g12670 Schrenkiella parvula HOM05D005399 ORTHO05D006347 3.4e-166 590.1 1065 35.7
CARHR158370 Cardamine hirsuta HOM05D005399 ORTHO05D006347 7.6e-166 589.0 1065 36.2
A01p24740 Brassica napus HOM05D005399 ORTHO05D006347 5.5e-164 582.8 1062 36.2
CDE04G3617 Ceratophyllum demersum HOM05D005399 ORTHO05D006347 7.1e-164 582.4 1017 36.8
BraA01t02386Z Brassica rapa HOM05D005399 ORTHO05D006347 2.7e-163 580.5 1062 36.1
Prupe.1G170200 Prunus persica HOM05D005399 ORTHO05D006347 2.3e-162 577.4 986 39.0
Ah.09g232770 Amaranthus hybridus HOM05D005399 ORTHO05D006347 4.3e-161 573.2 817 40.9
THA.LOC104803340 Tarenaya hassleriana HOM05D005399 ORTHO05D006347 4.3e-161 573.2 1080 36.4
Carub.0005s1567 Capsella rubella HOM05D005399 ORTHO05D006347 4.8e-160 569.7 1065 35.4
AL5G29160 Arabidopsis lyrata HOM05D005399 ORTHO05D006347 1.1e-159 568.5 1065 35.4
Nitab4.5_0002184g0080 Nicotiana tabacum HOM05D005399 ORTHO05D006347 3.1e-159 567.0 998 38.0
C01p30860 Brassica napus HOM05D005399 ORTHO05D006347 3.4e-158 563.5 1065 35.4
BolC1t03020H Brassica oleracea HOM05D005399 ORTHO05D006347 3.4e-158 563.5 1065 35.5
Medtr5g077160 Medicago truncatula HOM05D005399 ORTHO05D006347 4.5e-158 563.1 1059 35.4
Aa31LG4G17950 Aethionema arabicum HOM05D005399 ORTHO05D006347 5.8e-158 562.8 1066 35.1
Lj4g0025583 Lotus japonicus HOM05D005399 ORTHO05D006347 5.8e-158 562.8 1061 36.4
Oeu037969.1 Olea europaea HOM05D005399 ORTHO05D006347 3.8e-157 560.1 1054 35.3
SalBow6G2741 Salvia bowleyana HOM05D005399 ORTHO05D006347 3.8e-157 560.1 1058 36.6
Manes.01G042700 Manihot esculenta HOM05D005399 ORTHO05D006347 1.9e-156 557.8 1061 37.0
Phvul.004G128800 Phaseolus vulgaris HOM05D005399 ORTHO05D006347 7.9e-155 552.4 1060 35.2
SalBow1G5593 Salvia bowleyana HOM05D005399 ORTHO05D006347 7.9e-155 552.4 1057 36.4
TPR.G18894 Trifolium pratense HOM05D005399 ORTHO05D006347 6.7e-154 549.3 1062 34.7
Nitab4.5_0000271g0170 Nicotiana tabacum HOM05D005399 ORTHO05D006347 3.3e-153 547.0 660 46.5
Medtr1g059090 Medicago truncatula HOM05D005399 ORTHO05D006347 4.3e-153 546.6 1065 35.3
Glyma.10G094100 Glycine max HOM05D005399 ORTHO05D006347 9.6e-153 545.4 1055 35.2
Ca_27344_v3 Cicer arietinum L. HOM05D005399 ORTHO05D006347 6.3e-152 542.7 1059 35.3
Lj5g0008235 Lotus japonicus HOM05D005399 ORTHO05D006347 1.1e-151 542.0 1057 35.5
PSO063G2915 Papaver somniferum HOM05D005399 ORTHO05D006347 1.3e-149 535.0 745 45.0
Thhalv10010115m.g Eutrema salsugineum HOM05D005399 ORTHO05D006347 3.8e-149 533.5 1064 34.5
Gohir.A08G104400 Gossypium hirsutum HOM05D005399 ORTHO05D006347 2.5e-148 530.8 601 48.9
Dinv29218 Davidia involucrata HOM05D005399 ORTHO05D006347 9.3e-148 528.9 471 58.4
SalBow1G2085 Salvia bowleyana HOM05D005399 ORTHO05D006347 2.3e-146 524.2 1058 35.0
Duzib205G1241 Durio zibethinus HOM05D005399 ORTHO05D006347 3.3e-145 520.4 787 41.4
arahy.Tifrunner.gnm1.ann1.MB6KVE Arachis hypogaea HOM05D005399 ORTHO05D006347 1.1e-143 515.4 1060 34.0
Psat2g044800 Pisum sativum HOM05D005399 ORTHO05D006347 3.1e-143 513.8 1061 34.1
SalBow1G6622 Salvia bowleyana HOM05D005399 ORTHO05D006347 1.2e-142 511.9 1058 35.3
arahy.Tifrunner.gnm1.ann1.CBX7CP Arachis hypogaea HOM05D005399 ORTHO05D006347 2.6e-142 510.8 1058 33.7
MELO3C011011.2 Cucumis melo HOM05D005399 ORTHO05D006347 3.3e-137 493.8 970 34.5
Os01g0702400 Oryza sativa ssp. japonica HOM05D005399 ORTHO05D006347 2.1e-131 474.6 1066 32.2
Glyma.14G156200 Glycine max HOM05D005399 ORTHO05D006347 6.1e-131 473.0 639 44.6
CSS0012529 Camellia sinensis var. sinensis HOM05D005399 ORTHO05D006347 5.7e-129 466.5 356 65.2
Cpa.g.sc13.113 Carica papaya HOM05D005399 ORTHO05D006347 2.2e-120 438.0 919 36.5
arahy.Tifrunner.gnm1.ann1.F3K4LC Arachis hypogaea HOM05D005399 ORTHO05D006347 3.5e-118 430.6 639 41.2
Eucgr.H04750 Eucalyptus grandis HOM05D005399 ORTHO05D006347 1.7e-117 428.3 748 36.8
VMungo1080G0063 Vigna mungo HOM05D005399 ORTHO05D006347 3.6e-115 420.6 1278 27.5
PGSC0003DMG400005917 Solanum tuberosum HOM05D005399 ORTHO05D006347 2.0e-113 414.8 739 37.9
arahy.Tifrunner.gnm1.ann1.61K3C5 Arachis hypogaea HOM05D005399 ORTHO05D006347 4.4e-113 413.7 713 38.6
AT3G49400 Arabidopsis thaliana HOM05D005399 ORTHO05D006347 7.2e-108 396.4 781 35.0
unitig_749.g13730 Utricularia gibba HOM05D005399 ORTHO05D006347 6.1e-99 366.7 655 35.6
Mapoly0079s0055 Marchantia polymorpha HOM05D005399 ORTHO05D006347 2.6e-97 361.3 1163 28.7
arahy.Tifrunner.gnm1.ann1.GD33A2 Arachis hypogaea HOM05D005399 ORTHO05D006347 3.7e-96 357.5 823 31.3
AagrBONN_evm.TU.Sc2ySwM_117.1095 Anthoceros agrestis HOM05D005399 ORTHO05D006347 8.3e-96 356.3 1027 29.5
Dinv29217 Davidia involucrata HOM05D005399 ORTHO05D006347 7.0e-95 353.2 286 68.5
CSS0044981 Camellia sinensis var. sinensis HOM05D005399 ORTHO05D006347 5.8e-89 333.6 294 59.9
VMungo0464G0254 Vigna mungo HOM05D005399 ORTHO05D006347 2.0e-81 308.5 791 30.5
Zm00001eb062490 Zea mays HOM05D005399 ORTHO05D006347 4.1e-79 300.8 540 35.7
Pp3c18_13210 Physcomitrium patens HOM05D005399 ORTHO05D006347 7.1e-79 300.1 1090 26.5
SMO170G0037 Selaginella moellendorffii HOM05D005399 ORTHO05D006347 1.9e-71 275.4 1083 26.2
Zm00001eb211870 Zea mays HOM05D005399 ORTHO05D006347 2.4e-71 275.0 683 32.5
Dinv07613 Davidia involucrata HOM05D005399 ORTHO05D006347 8.1e-67 260.0 159 79.9
Peaxi162Scf00526g00518 Petunia axillaris HOM05D005399 ORTHO05D006347 8.1e-67 260.0 290 44.8
arahy.Tifrunner.gnm1.ann1.JN7TNN Arachis hypogaea HOM05D005399 ORTHO05D006347 7.8e-62 243.4 339 43.1
Eucgr.H04749 Eucalyptus grandis HOM05D005399 ORTHO05D006347 7.8e-62 243.4 307 45.3
Peaxi162Scf00526g00516 Petunia axillaris HOM05D005399 ORTHO05D006347 5.1e-61 240.7 204 60.8
Gohir.A08G105050 Gossypium hirsutum HOM05D005399 ORTHO05D006347 1.6e-59 235.7 196 59.2
Solyc06g073690.2 Solanum lycopersicum HOM05D005399 ORTHO05D006347 1.8e-58 232.3 205 60.5
BcaB05g23117 Brassica carinata HOM05D005399 ORTHO05D006347 9.6e-52 209.9 212 51.4
SHI24245 Sapria himalayana HOM05D005399 ORTHO05D006347 4.6e-46 191.0 367 36.0
arahy.Tifrunner.gnm1.ann1.QKC624 Arachis hypogaea HOM05D005399 ORTHO05D006347 2.6e-41 175.3 283 40.6
HPP92_021257 Vanilla planifolia HOM05D005399 ORTHO05D006347 1.3e-35 156.4 275 34.5
BcaC09g49950 Brassica carinata HOM05D005399 ORTHO05D006347 1.1e-31 143.3 109 62.4
SHI24147 Sapria himalayana HOM05D005399 ORTHO05D006347 1.4e-31 142.9 296 34.1
BcaC09g49949 Brassica carinata HOM05D005399 ORTHO05D006347 2.1e-30 139.0 228 40.4
CBR_g20108 Chara braunii HOM05D001969 ORTHO05D003463 2.5e-28 132.1 132 44.7
SEGI_05702 Sequoiadendron giganteum HOM05D005399 ORTHO05D006347 3.1e-26 125.2 191 39.3
MD10G1005800 Malus domestica HOM05D005399 ORTHO05D006347 1.0e-21 110.2 92 55.4
SEGI_00776 Sequoiadendron giganteum HOM05D005399 ORTHO05D006347 5.1e-21 107.8 89 58.4
MBI17_g18936_MAGBIO Magnolia biondii HOM05D005399 ORTHO05D006347 7.4e-20 104.0 139 41.7
SHI24234 Sapria himalayana HOM05D005399 ORTHO05D006347 4.8e-19 101.3 137 48.2
Psat6g243120 Pisum sativum HOM05D005399 ORTHO05D006347 1.8e-18 99.4 189 31.2
MCO09G305 Micromonas commoda HOM05D005399 ORTHO05D006347 2.6e-12 79.0 155 35.5
EL10As6g23691 Beta vulgaris HOM05D005399 ORTHO05D006347 7.7e-09 67.4 108 36.1
MBI17_g10900_MAGBIO Magnolia biondii HOM05D005399 ORTHO05D006347 2.2e-08 65.9 61 54.1
SHI24230 Sapria himalayana HOM05D005399 ORTHO05D006347 6.5e-08 64.3 42 76.2


User provided reference genes

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