Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3C871G6 Lonicera japonica HOM05D004292 ORTHO05D005206 6.3e-140 500.7 249 100.0
Dinv07664 Davidia involucrata HOM05D004292 ORTHO05D005206 6.3e-116 421.0 248 80.2
Actinidia12367 Actinidia chinensis HOM05D004292 ORTHO05D005206 2.4e-115 419.1 248 79.4
Hma1.2p1_0096F.1_g047700 Hydrangea macrophylla HOM05D004292 ORTHO05D005206 1.6e-114 416.4 248 79.4
Actinidia36661 Actinidia chinensis HOM05D004292 ORTHO05D005206 2.3e-113 412.5 248 77.8
Peaxi162Scf00253g01121 Petunia axillaris HOM05D004292 ORTHO05D005206 9.5e-112 407.1 248 77.8
CSS0026867 Camellia sinensis var. sinensis HOM05D004292 ORTHO05D005206 2.6e-109 399.1 248 75.4
Atru.chr11.473 Acer truncatum HOM05D004292 ORTHO05D005206 6.3e-108 394.4 248 75.4
MSTRG.2160 Avicennia marina HOM05D004292 ORTHO05D005206 2.4e-107 392.5 248 74.2
Nitab4.5_0004230g0010 Nicotiana tabacum HOM05D004292 ORTHO05D005206 2.4e-107 392.5 248 75.0
Potri.010G111300 Populus trichocarpa HOM05D004292 ORTHO05D005206 2.4e-107 392.5 248 75.4
PGSC0003DMG401005954 Solanum tuberosum HOM05D004292 ORTHO05D005206 1.6e-106 389.8 248 74.2
Rhsim09G0096100 Rhododendron simsii HOM05D004292 ORTHO05D005206 2.7e-106 389.0 253 72.7
CSS0022047 Camellia sinensis var. sinensis HOM05D004292 ORTHO05D005206 5.9e-106 387.9 251 73.7
Nn3g18267 Nelumbo nucifera HOM05D004292 ORTHO05D005206 5.9e-106 387.9 249 73.9
Sopen04g002820 Solanum pennellii HOM05D004292 ORTHO05D005206 5.9e-106 387.9 248 73.8
PGR119G0156 Punica granatum HOM05D004292 ORTHO05D005206 1.0e-105 387.1 249 75.5
Manes.17G078500 Manihot esculenta HOM05D004292 ORTHO05D005206 1.3e-105 386.7 248 73.4
Solyc04g007730.3 Solanum lycopersicum HOM05D004292 ORTHO05D005206 1.3e-105 386.7 248 73.8
CAN.G150.4 Capsicum annuum HOM05D004292 ORTHO05D005206 1.7e-105 386.3 248 74.6
Manes.15G129300 Manihot esculenta HOM05D004292 ORTHO05D005206 1.7e-105 386.3 248 73.4
GSVIVG01011737001 Vitis vinifera HOM05D004292 ORTHO05D005206 1.7e-105 386.3 248 73.8
Eucgr.G02180 Eucalyptus grandis HOM05D004292 ORTHO05D005206 2.9e-105 385.6 248 73.0
Thecc.02G283600 Theobroma cacao HOM05D004292 ORTHO05D005206 2.9e-105 385.6 248 75.8
TAR374G0923 Trochodendron aralioides HOM05D004292 ORTHO05D005206 6.6e-105 384.4 248 74.6
Duzib248G1431 Durio zibethinus HOM05D004292 ORTHO05D005206 1.5e-104 383.3 248 75.4
Duzib251G0662 Durio zibethinus HOM05D004292 ORTHO05D005206 2.5e-104 382.5 249 75.5
Gorai.002G178500 Gossypium raimondii HOM05D004292 ORTHO05D005206 4.3e-104 381.7 248 75.0
SGA_v2.0_scaffold234G43615 Striga asiatica HOM05D004292 ORTHO05D005206 5.6e-104 381.3 249 74.7
Gohir.D01G144600 Gossypium hirsutum HOM05D004292 ORTHO05D005206 7.3e-104 380.9 248 75.0
Nn4g24213 Nelumbo nucifera HOM05D004292 ORTHO05D005206 7.3e-104 380.9 248 71.4
Prupe.1G326900 Prunus persica HOM05D004292 ORTHO05D005206 7.3e-104 380.9 248 73.8
Ciclev10016392m.g Citrus clementina HOM05D004292 ORTHO05D005206 9.5e-104 380.6 248 72.2
Sabra10G0081700 Salix brachista HOM05D004292 ORTHO05D005206 1.6e-103 379.8 248 72.6
Peaxi162Scf00159g01025 Petunia axillaris HOM05D004292 ORTHO05D005206 2.8e-103 379.0 248 72.6
THA.LOC104809176 Tarenaya hassleriana HOM05D004292 ORTHO05D005206 1.8e-102 376.3 248 71.8
Sp5g26070 Schrenkiella parvula HOM05D004292 ORTHO05D005206 8.9e-102 374.0 248 72.6
TWI75G1503 Tripterygium wilfordii HOM05D004292 ORTHO05D005206 8.9e-102 374.0 248 72.6
arahy.Tifrunner.gnm1.ann1.EY5UDZ Arachis hypogaea HOM05D004292 ORTHO05D005206 1.2e-101 373.6 250 70.8
CANSAT64G1906 Cannabis sativa HOM05D004292 ORTHO05D005206 1.2e-101 373.6 248 71.4
Thhalv10019522m.g Eutrema salsugineum HOM05D004292 ORTHO05D005206 1.2e-101 373.6 248 72.2
RcHm_v2.0_Chr4g0441581 Rosa chinensis HOM05D004292 ORTHO05D005206 1.5e-101 373.2 248 73.0
MD16G1026500 Malus domestica HOM05D004292 ORTHO05D005206 2.6e-101 372.5 249 72.3
A07p37330 Brassica napus HOM05D004292 ORTHO05D005206 3.4e-101 372.1 248 71.8
Gohir.A05G309400 Gossypium hirsutum HOM05D004292 ORTHO05D005206 5.7e-101 371.3 248 73.0
Gohir.D05G310300 Gossypium hirsutum HOM05D004292 ORTHO05D005206 5.7e-101 371.3 248 73.0
AT1G70900 Arabidopsis thaliana HOM05D004292 ORTHO05D005206 9.8e-101 370.5 248 72.6
SalBow2G3034 Salvia bowleyana HOM05D004292 ORTHO05D005206 9.8e-101 370.5 248 69.8
QL01p001285 Quercus lobata HOM05D004292 ORTHO05D005206 1.3e-100 370.2 248 71.0
BcaB03g14853 Brassica carinata HOM05D004292 ORTHO05D005206 1.7e-100 369.8 248 72.2
C06p45000 Brassica napus HOM05D004292 ORTHO05D005206 1.7e-100 369.8 248 71.4
BolC6t39558H Brassica oleracea HOM05D004292 ORTHO05D005206 1.7e-100 369.8 248 71.4
CiPaw.06G047000 Carya illinoinensis HOM05D004292 ORTHO05D005206 1.7e-100 369.8 248 70.6
AL2G30410 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 2.2e-100 369.4 248 72.6
BraA07t31292Z Brassica rapa HOM05D004292 ORTHO05D005206 2.2e-100 369.4 248 71.4
FAN07G2049 Fragaria x ananassa HOM05D004292 ORTHO05D005206 2.2e-100 369.4 248 73.0
CARHR064180 Cardamine hirsuta HOM05D004292 ORTHO05D005206 2.9e-100 369.0 248 71.4
Gorai.009G330900 Gossypium raimondii HOM05D004292 ORTHO05D005206 2.9e-100 369.0 248 72.6
Medtr1g031620 Medicago truncatula HOM05D004292 ORTHO05D005206 2.9e-100 369.0 250 71.2
Sp1g20550 Schrenkiella parvula HOM05D004292 ORTHO05D005206 2.9e-100 369.0 248 70.2
AT1G23110 Arabidopsis thaliana HOM05D004292 ORTHO05D005206 3.7e-100 368.6 248 71.0
BcaC08g46539 Brassica carinata HOM05D004292 ORTHO05D005206 3.7e-100 368.6 248 71.0
COL.COLO4_13153 Corchorus olitorius HOM05D004292 ORTHO05D005206 3.7e-100 368.6 248 73.4
Cfa008626 Carpinus fangiana HOM05D004292 ORTHO05D005206 8.3e-100 367.5 248 71.4
Aa31LG7G7080 Aethionema arabicum HOM05D004292 ORTHO05D005206 1.1e-99 367.1 259 68.7
Carub.0002s1769 Capsella rubella HOM05D004292 ORTHO05D005206 1.1e-99 367.1 248 71.8
Lj2g0018897 Lotus japonicus HOM05D004292 ORTHO05D005206 1.1e-99 367.1 250 70.0
Migut.L00354 Erythranthe guttata HOM05D004292 ORTHO05D005206 1.4e-99 366.7 250 70.0
FAN22G2140 Fragaria x ananassa HOM05D004292 ORTHO05D005206 1.4e-99 366.7 248 72.6
Carub.0001s2263 Capsella rubella HOM05D004292 ORTHO05D005206 1.8e-99 366.3 248 71.0
Thhalv10008584m.g Eutrema salsugineum HOM05D004292 ORTHO05D005206 2.4e-99 365.9 248 70.2
FAN17G0423 Fragaria x ananassa HOM05D004292 ORTHO05D005206 3.2e-99 365.5 248 72.2
FvH4_4g32670 Fragaria vesca HOM05D004292 ORTHO05D005206 5.4e-99 364.8 248 72.2
FAN12G2104 Fragaria x ananassa HOM05D004292 ORTHO05D005206 5.4e-99 364.8 248 72.2
Haze_10980 Corylus avellana HOM05D004292 ORTHO05D005206 1.6e-98 363.2 249 70.3
PSO017G6162 Papaver somniferum HOM05D004292 ORTHO05D005206 2.0e-98 362.8 249 71.1
Phvul.003G031700 Phaseolus vulgaris HOM05D004292 ORTHO05D005206 2.0e-98 362.8 250 68.4
Psat6g043600 Pisum sativum HOM05D004292 ORTHO05D005206 4.6e-98 361.7 250 69.6
TPR.G36967 Trifolium pratense HOM05D004292 ORTHO05D005206 4.6e-98 361.7 250 69.6
Aqoxy3G00082 Aquilegia oxysepala HOM05D004292 ORTHO05D005206 5.9e-98 361.3 248 71.0
Migut.L00977 Erythranthe guttata HOM05D004292 ORTHO05D005206 5.9e-98 361.3 250 68.8
VMungo1215G3121 Vigna mungo HOM05D004292 ORTHO05D005206 7.8e-98 360.9 250 68.0
MD13G1023800 Malus domestica HOM05D004292 ORTHO05D005206 1.0e-97 360.5 249 71.1
Rhsim09G0095100 Rhododendron simsii HOM05D004292 ORTHO05D005206 1.0e-97 360.5 249 68.7
Migut.E00438 Erythranthe guttata HOM05D004292 ORTHO05D005206 1.3e-97 360.1 248 69.8
CARHR023490 Cardamine hirsuta HOM05D004292 ORTHO05D005206 2.3e-97 359.4 248 67.7
Lalb_Chr17g0338501 Lupinus albus HOM05D004292 ORTHO05D005206 2.3e-97 359.4 250 69.2
arahy.Tifrunner.gnm1.ann1.A6Q8V1 Arachis hypogaea HOM05D004292 ORTHO05D005206 3.0e-97 359.0 250 68.8
Glyma.19G064200 Glycine max HOM05D004292 ORTHO05D005206 3.9e-97 358.6 250 68.0
ATR0564G234 Amborella trichopoda HOM05D004292 ORTHO05D005206 5.0e-97 358.2 249 69.1
PSO478G0265 Papaver somniferum HOM05D004292 ORTHO05D005206 5.0e-97 358.2 249 71.1
Sc04g0005360 Simmondsia chinensis HOM05D004292 ORTHO05D005206 6.6e-97 357.8 250 66.8
BcaB03g14168 Brassica carinata HOM05D004292 ORTHO05D005206 1.5e-96 356.7 248 69.8
HanXRQChr08g0212101 Helianthus annuus HOM05D004292 ORTHO05D005206 7.3e-96 354.4 251 68.5
Potri.008G130700 Populus trichocarpa HOM05D004292 ORTHO05D005206 7.3e-96 354.4 248 68.5
AL1G36680 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 1.2e-95 353.6 249 68.3
SalBow8G2865 Salvia bowleyana HOM05D004292 ORTHO05D005206 6.2e-95 351.3 241 69.7
MBI19_g22783_MAGBIO Magnolia biondii HOM05D004292 ORTHO05D005206 1.4e-94 350.1 292 62.3
A07p14020 Brassica napus HOM05D004292 ORTHO05D005206 4.0e-94 348.6 243 70.8
BraA07t29156Z Brassica rapa HOM05D004292 ORTHO05D005206 4.0e-94 348.6 243 70.8
SalBow8G2030 Salvia bowleyana HOM05D004292 ORTHO05D005206 4.0e-94 348.6 241 69.3
BolC7t42590H Brassica oleracea HOM05D004292 ORTHO05D005206 2.0e-93 346.3 243 69.5
Lsat_1_v5_gn_8_44580 Lactuca sativa HOM05D004292 ORTHO05D005206 4.4e-93 345.1 251 68.5
TAR622G0066 Trochodendron aralioides HOM05D004292 ORTHO05D005206 7.5e-93 344.4 225 71.6
BcaC06g35023 Brassica carinata HOM05D004292 ORTHO05D005206 9.8e-93 344.0 272 64.3
C07p20600 Brassica napus HOM05D004292 ORTHO05D005206 9.8e-93 344.0 272 64.3
HanXRQChr12g0364371 Helianthus annuus HOM05D004292 ORTHO05D005206 9.8e-93 344.0 251 66.5
CsaV3_5G028400 Cucumis sativus L. HOM05D004292 ORTHO05D005206 6.4e-92 341.3 248 64.9
AUR62014183 Chenopodium quinoa HOM05D004292 ORTHO05D005206 8.3e-92 340.9 248 67.3
ClCG01G006270 Citrullus lanatus HOM05D004292 ORTHO05D005206 8.3e-92 340.9 248 65.3
ECA233G2687 Erigeron canadensis HOM05D004292 ORTHO05D005206 8.3e-92 340.9 250 66.8
Nitab4.5_0000426g0230 Nicotiana tabacum HOM05D004292 ORTHO05D005206 1.1e-91 340.5 248 68.1
MELO3C005303.2 Cucumis melo HOM05D004292 ORTHO05D005206 5.4e-91 338.2 248 64.5
DCAR_023592 Daucus carota HOM05D004292 ORTHO05D005206 9.2e-91 337.4 248 69.0
Aa31LG4G10150 Aethionema arabicum HOM05D004292 ORTHO05D005206 1.3e-89 333.6 292 58.9
HPP92_009641 Vanilla planifolia HOM05D004292 ORTHO05D005206 2.3e-89 332.8 242 67.8
Hund10268 Selenicereus undatus HOM05D004292 ORTHO05D005206 3.9e-89 332.0 251 63.3
Sed0011413 Sechium edule HOM05D004292 ORTHO05D005206 1.5e-88 330.1 248 66.1
CDE05G3602 Ceratophyllum demersum HOM05D004292 ORTHO05D005206 3.6e-87 325.5 240 65.8
Os08g0433200 Oryza sativa ssp. japonica HOM05D004292 ORTHO05D005206 3.1e-86 322.4 237 67.1
Dinv14417 Davidia involucrata HOM05D004292 ORTHO05D005206 5.2e-86 321.6 182 82.4
Zm00001eb041560 Zea mays HOM05D004292 ORTHO05D005206 2.2e-84 316.2 254 62.2
Ca_12594_v3 Cicer arietinum L. HOM05D004292 ORTHO05D005206 7.1e-83 311.2 248 62.1
Lj6C744T5 Lonicera japonica HOM05D004292 ORTHO05D005206 1.2e-82 310.5 248 65.3
Cpa.g.c36802 Carica papaya HOM05D004292 ORTHO05D005206 3.0e-81 305.8 201 73.1
DCAR_030229 Daucus carota HOM05D004292 ORTHO05D005206 6.6e-81 304.7 248 64.5
Zm00001eb099420 Zea mays HOM05D004292 ORTHO05D005206 7.3e-80 301.2 250 59.6
Oeu018604.1 Olea europaea HOM05D004292 ORTHO05D005206 8.9e-78 294.3 172 80.8
Cc11_g08440 Coffea canephora HOM05D004292 ORTHO05D005206 2.1e-74 283.1 186 75.8
MBI12_g36036_MAGBIO Magnolia biondii HOM05D004292 ORTHO05D005206 6.0e-74 281.6 240 60.0
Gohir.A01G151400 Gossypium hirsutum HOM05D004292 ORTHO05D005206 5.6e-72 275.0 181 75.1
Ah.03g137320 Amaranthus hybridus HOM05D004292 ORTHO05D001279 2.8e-71 272.7 173 74.0
vmacro10653 Vaccinium macrocarpon HOM05D004292 ORTHO05D005206 1.1e-67 260.8 210 64.8
vmacro10650 Vaccinium macrocarpon HOM05D004292 ORTHO05D005206 1.2e-66 257.3 148 83.1
Ca_12581_v3 Cicer arietinum L. HOM05D004292 ORTHO05D005206 3.6e-63 245.7 151 75.5
Mapoly0185s0002 Marchantia polymorpha HOM05D004292 ORTHO05D005206 1.1e-62 244.2 232 50.4
unitig_699.g19535 Utricularia gibba HOM05D004292 ORTHO05D005206 3.1e-54 216.1 210 54.8
Pp3c24_11420 Physcomitrium patens HOM05D004292 ORTHO05D005206 3.5e-50 202.6 179 53.1
SMO111G0032 Selaginella moellendorffii HOM05D004292 ORTHO05D005206 1.9e-48 196.8 173 56.6
C06p45020 Brassica napus HOM05D004292 ORTHO05D005206 1.1e-43 181.0 188 53.2
BolC6t39560H Brassica oleracea HOM05D004292 ORTHO05D005206 1.1e-43 181.0 188 53.2
Pp3c7_7180 Physcomitrium patens HOM05D004292 ORTHO05D005206 1.6e-42 177.2 200 43.5
CDE05G3401 Ceratophyllum demersum HOM05D001044 ORTHO05D004551 1.8e-41 173.7 110 74.5
AagrBONN_evm.TU.Sc2ySwM_368.1350 Anthoceros agrestis HOM05D004292 ORTHO05D005206 8.2e-39 164.9 150 53.3
AL337U10010 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 1.9e-32 143.7 86 80.2
GSVIVG01038114001 Vitis vinifera HOM05D000242 ORTHO05D000631 5.9e-29 132.1 75 80.0
MD06G1224600 Malus domestica HOM05D004292 ORTHO05D005206 3.3e-24 116.3 75 70.7
Cre03.g173550 Chlamydomonas reinhardtii HOM05D004292 ORTHO05D005206 2.2e-23 113.6 174 36.2
Cc07_g18460 Coffea canephora HOM05D004292 ORTHO05D005206 9.1e-22 108.2 75 76.0
Cc11_g08450 Coffea canephora HOM05D004292 ORTHO05D005206 2.6e-21 106.7 62 77.4
PRCOL_00000603 Prasinoderma coloniale HOM05D004292 ORTHO05D005206 2.2e-20 103.6 168 35.1
DCAR_000574 Daucus carota HOM05D004292 ORTHO05D005206 6.5e-20 102.1 106 56.6
C02p28370 Brassica napus HOM05D004292 ORTHO05D005206 9.4e-19 98.2 100 52.0
BolC2t08881H Brassica oleracea HOM05D004292 ORTHO05D005206 9.4e-19 98.2 100 52.0
DCAR_009878 Daucus carota HOM05D004292 ORTHO05D005206 3.3e-16 89.7 83 62.7
DCAR_009985 Daucus carota HOM05D004292 ORTHO05D005206 7.7e-13 78.6 92 52.2
MCO07G095 Micromonas commoda HOM05D004292 ORTHO05D005206 2.1e-10 70.5 234 26.5
Cre03.g160850 Chlamydomonas reinhardtii HOM05D004292 ORTHO05D005206 1.8e-09 67.4 172 28.5
arahy.Tifrunner.gnm1.ann1.B49LBP Arachis hypogaea HOM05D004292 ORTHO05D005206 4.4e-08 62.8 51 58.8
Os09g0411500 Oryza sativa ssp. japonica HOM05D004292 ORTHO05D005206 4.4e-08 62.8 46 58.7
Lj4g0003601 Lotus japonicus HOM05D000353 ORTHO05D000174 1.7e-07 60.8 38 76.3
PRCOL_00001474 Prasinoderma coloniale HOM05D004292 ORTHO05D005206 1.7e-07 60.8 236 23.7
arahy.Tifrunner.gnm1.ann1.06RDDY Arachis hypogaea HOM05D004292 ORTHO05D005206 4.8e-07 59.3 54 59.3


User provided reference genes

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