Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3C867T4 Lonicera japonica HOM05D005212 ORTHO05D006353 4.4e-175 617.8 308 100.0
CiPaw.05G194300 Carya illinoinensis HOM05D005212 ORTHO05D006353 2.1e-108 396.4 305 66.9
QL03p033836 Quercus lobata HOM05D005212 ORTHO05D006353 3.3e-106 389.0 300 64.7
CSS0012951 Camellia sinensis var. sinensis HOM05D005212 ORTHO05D006353 9.6e-106 387.5 305 65.2
Prupe.1G329700 Prunus persica HOM05D005212 ORTHO05D006353 4.9e-102 375.2 304 63.5
GSVIVG01023834001 Vitis vinifera HOM05D005212 ORTHO05D006353 6.4e-102 374.8 305 62.6
Prupe.8G002300 Prunus persica HOM05D005212 ORTHO05D006353 8.4e-102 374.4 304 63.5
Peaxi162Scf00723g00423 Petunia axillaris HOM05D005212 ORTHO05D006353 1.9e-101 373.2 308 61.0
Lalb_Chr07g0187701 Lupinus albus HOM05D005212 ORTHO05D006353 7.9e-100 367.9 305 61.6
GSVIVG01011709001 Vitis vinifera HOM05D005212 ORTHO05D006353 7.9e-100 367.9 316 60.8
CAN.G458.6 Capsicum annuum HOM05D005212 ORTHO05D006353 3.9e-99 365.5 303 61.4
Duzib268G0887 Durio zibethinus HOM05D005212 ORTHO05D006353 6.7e-99 364.8 305 61.3
Solyc04g007850.3 Solanum lycopersicum HOM05D005212 ORTHO05D006353 1.5e-98 363.6 303 60.4
TPR.G5141 Trifolium pratense HOM05D005212 ORTHO05D006353 1.5e-98 363.6 306 63.4
Gohir.D13G128200 Gossypium hirsutum HOM05D005212 ORTHO05D006353 4.3e-98 362.1 305 61.3
Sopen04g002980 Solanum pennellii HOM05D005212 ORTHO05D006353 5.6e-98 361.7 303 60.1
Gohir.D09G202000 Gossypium hirsutum HOM05D005212 ORTHO05D006353 7.4e-98 361.3 305 61.0
Gorai.013G143600 Gossypium raimondii HOM05D005212 ORTHO05D006353 7.4e-98 361.3 305 61.3
Rhsim09G0094100 Rhododendron simsii HOM05D005212 ORTHO05D006353 1.3e-97 360.5 305 61.6
Gorai.006G225800 Gossypium raimondii HOM05D005212 ORTHO05D006353 2.8e-97 359.4 305 60.7
Ca_24783_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 6.2e-97 358.2 306 62.4
TPR.G18569 Trifolium pratense HOM05D005212 ORTHO05D006353 6.2e-97 358.2 306 62.4
Haze_10945 Corylus avellana HOM05D005212 ORTHO05D006353 8.1e-97 357.8 305 61.3
Dinv36246 Davidia involucrata HOM05D005212 ORTHO05D006353 1.4e-96 357.1 310 61.0
Nn3g18288 Nelumbo nucifera HOM05D005212 ORTHO05D006353 1.8e-96 356.7 306 61.1
Duzib151G1103 Durio zibethinus HOM05D005212 ORTHO05D006353 3.1e-96 355.9 305 60.3
Nitab4.5_0009115g0010 Nicotiana tabacum HOM05D005212 ORTHO05D006353 5.3e-96 355.1 312 58.7
TWI60G0083 Tripterygium wilfordii HOM05D005212 ORTHO05D006353 6.9e-96 354.8 305 62.0
Gohir.A13G124600 Gossypium hirsutum HOM05D005212 ORTHO05D006353 9.0e-96 354.4 305 60.0
vmacro10659 Vaccinium macrocarpon HOM05D005212 ORTHO05D006353 1.5e-95 353.6 305 61.0
Gohir.A09G208525 Gossypium hirsutum HOM05D005212 ORTHO05D006353 2.6e-95 352.8 309 60.8
RcHm_v2.0_Chr3g0448371 Rosa chinensis HOM05D005212 ORTHO05D006353 4.5e-95 352.1 305 60.3
Atru.chr12.1198 Acer truncatum HOM05D005212 ORTHO05D006353 9.9e-95 350.9 312 61.5
Ca_01441_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 9.9e-95 350.9 311 61.1
Oeu014050.1 Olea europaea HOM05D005212 ORTHO05D006353 1.7e-94 350.1 305 60.0
Ciclev10028815m.g Citrus clementina HOM05D005212 ORTHO05D006353 2.9e-94 349.4 311 59.2
Manes.17G080300 Manihot esculenta HOM05D005212 ORTHO05D006353 2.9e-94 349.4 303 60.1
PGR102G0858 Punica granatum HOM05D005212 ORTHO05D006353 2.9e-94 349.4 304 58.9
Potri.001G461100 Populus trichocarpa HOM05D005212 ORTHO05D006353 4.9e-94 348.6 305 58.4
RcHm_v2.0_Chr4g0443611 Rosa chinensis HOM05D005212 ORTHO05D006353 4.9e-94 348.6 306 60.8
Lj4g0012207 Lotus japonicus HOM05D005212 ORTHO05D006353 1.4e-93 347.1 310 60.6
Psat7g082520 Pisum sativum HOM05D005212 ORTHO05D006353 3.2e-93 345.9 307 60.9
Thecc.04G190200 Theobroma cacao HOM05D005212 ORTHO05D006353 5.5e-93 345.1 305 59.3
FvH4_4g34100 Fragaria vesca HOM05D005212 ORTHO05D006353 2.1e-92 343.2 305 58.7
Dinv28041 Davidia involucrata HOM05D005212 ORTHO05D006353 6.0e-92 341.7 249 68.7
HanXRQChr12g0363921 Helianthus annuus HOM05D005212 ORTHO05D006353 7.9e-92 341.3 310 58.1
ECA233G1697 Erigeron canadensis HOM05D005212 ORTHO05D006353 2.3e-91 339.7 312 57.7
Medtr3g096970 Medicago truncatula HOM05D005212 ORTHO05D006353 3.0e-91 339.3 307 60.3
Medtr3g088850 Medicago truncatula HOM05D005212 ORTHO05D006353 6.7e-91 338.2 309 60.5
THA.LOC104816387 Tarenaya hassleriana HOM05D005212 ORTHO05D006353 5.6e-90 335.1 313 57.5
Migut.E00446 Erythranthe guttata HOM05D005212 ORTHO05D006353 1.3e-89 334.0 305 56.4
HanXRQChr08g0212231 Helianthus annuus HOM05D005212 ORTHO05D006353 2.1e-89 333.2 304 57.2
Hma1.2p1_0060F.1_g032750 Hydrangea macrophylla HOM05D005212 ORTHO05D006353 2.8e-89 332.8 293 61.1
SalBow2G0696 Salvia bowleyana HOM05D005212 ORTHO05D006353 3.7e-89 332.4 310 55.5
PGSC0003DMG400029477 Solanum tuberosum HOM05D005212 ORTHO05D006353 4.0e-88 328.9 278 59.7
FAN22G0397 Fragaria x ananassa HOM05D005212 ORTHO05D006353 5.3e-88 328.6 326 55.2
MD16G1023100 Malus domestica HOM05D005212 ORTHO05D006353 4.5e-87 325.5 253 64.4
Glyma.08G095400 Glycine max HOM05D005212 ORTHO05D006353 2.2e-86 323.2 305 57.4
Oeu063592.1 Olea europaea HOM05D005212 ORTHO05D006353 2.2e-86 323.2 296 58.1
Sabra16G0312600 Salix brachista HOM05D005212 ORTHO05D006353 2.9e-86 322.8 307 56.0
FAN17G0532 Fragaria x ananassa HOM05D005212 ORTHO05D006353 4.9e-86 322.0 326 53.7
SGA_v2.0_scaffold39G15210 Striga asiatica HOM05D005212 ORTHO05D006353 3.2e-85 319.3 312 54.5
FAN12G1848 Fragaria x ananassa HOM05D005212 ORTHO05D006353 4.2e-85 318.9 296 56.8
Ciclev10017606m.g Citrus clementina HOM05D005212 ORTHO05D006353 4.6e-84 315.5 296 57.4
Sc10g0005560 Simmondsia chinensis HOM05D005212 ORTHO05D006353 1.0e-83 314.3 310 54.8
Phvul.005G028500 Phaseolus vulgaris HOM05D005212 ORTHO05D006353 3.9e-83 312.4 308 58.1
Aa31LG1G21440 Aethionema arabicum HOM05D005212 ORTHO05D006353 6.7e-83 311.6 309 55.7
BraA04t18796Z Brassica rapa HOM05D000073 ORTHO05D000033 6.7e-83 311.6 312 53.5
Manes.15G130900 Manihot esculenta HOM05D005212 ORTHO05D006353 6.7e-83 311.6 307 53.7
AL4G43530 Arabidopsis lyrata HOM05D005212 ORTHO05D006353 1.1e-82 310.8 316 53.8
A04p33360 Brassica napus HOM05D000073 ORTHO05D006698 3.3e-82 309.3 307 54.1
BolC4t28609H Brassica oleracea HOM05D000073 ORTHO05D006353 4.3e-82 308.9 309 53.4
BcaC02g07097 Brassica carinata HOM05D005212 ORTHO05D006353 5.7e-82 308.5 306 53.3
C04p71050 Brassica napus HOM05D000073 ORTHO05D006698 5.7e-82 308.5 306 53.3
Aqoxy7G01425 Aquilegia oxysepala HOM05D005212 ORTHO05D006353 7.4e-82 308.1 307 55.7
AT2G44510 Arabidopsis thaliana HOM05D005212 ORTHO05D006353 1.6e-81 307.0 307 54.1
EL10Ac9g21945 Beta vulgaris HOM05D005212 ORTHO05D006353 1.6e-81 307.0 300 55.3
CARHR139690 Cardamine hirsuta HOM05D005212 ORTHO05D006353 1.6e-81 307.0 306 54.2
DCAR_014725 Daucus carota HOM05D005212 ORTHO05D006353 2.2e-81 306.6 305 53.8
Thhalv10001552m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 6.3e-81 305.1 311 54.7
Lsat_1_v5_gn_4_8681 Lactuca sativa HOM05D005212 ORTHO05D006353 1.1e-80 304.3 307 54.7
Sp4g26600 Schrenkiella parvula HOM05D005212 ORTHO05D006353 1.1e-80 304.3 307 54.1
CsaV3_5G028340 Cucumis sativus L. HOM05D005212 ORTHO05D006353 4.1e-80 302.4 302 56.0
CANSAT01G1481 Cannabis sativa HOM05D005212 ORTHO05D006353 1.2e-79 300.8 303 52.5
Carub.0004s2707 Capsella rubella HOM05D005212 ORTHO05D006353 1.5e-79 300.4 313 53.7
Sed0020748 Sechium edule HOM05D005212 ORTHO05D006353 4.5e-79 298.9 306 53.9
MSTRG.13603 Avicennia marina HOM05D005212 ORTHO05D006353 1.0e-78 297.7 233 63.9
BcaB06g29383 Brassica carinata HOM05D005212 ORTHO05D006353 3.8e-78 295.8 306 51.3
Eucgr.H01942 Eucalyptus grandis HOM05D005212 ORTHO05D006353 1.4e-77 293.9 322 51.9
Sed0012238 Sechium edule HOM05D005212 ORTHO05D006353 7.2e-77 291.6 259 58.3
FAN07G0183 Fragaria x ananassa HOM05D005212 ORTHO05D006353 1.2e-76 290.8 221 67.0
ClCG01G006340 Citrullus lanatus HOM05D005212 ORTHO05D006353 1.4e-75 287.3 308 53.2
VMungo1080G0912 Vigna mungo HOM05D005212 ORTHO05D006353 1.7e-73 280.4 321 52.0
Ah.11g044490 Amaranthus hybridus HOM05D005212 ORTHO05D006353 5.3e-72 275.4 310 51.0
HPP92_020815 Vanilla planifolia HOM05D005212 ORTHO05D006353 1.3e-70 270.8 320 48.1
MELO3C005296.2 Cucumis melo HOM05D005212 ORTHO05D006353 9.4e-69 264.6 256 55.1
Hund05206 Selenicereus undatus HOM05D005212 ORTHO05D006353 7.4e-66 255.0 282 51.4
AUR62008760 Chenopodium quinoa HOM05D005212 ORTHO05D006353 1.7e-65 253.8 302 48.7
Thhalv10014438m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 1.8e-64 250.4 235 59.6
Os03g0853900 Oryza sativa ssp. japonica HOM05D005212 ORTHO05D006353 1.8e-64 250.4 332 44.0
PSO384G3589 Papaver somniferum HOM05D005212 ORTHO05D006353 5.3e-64 248.8 322 45.7
PSO478G2757 Papaver somniferum HOM05D005212 ORTHO05D006353 7.0e-64 248.4 316 46.2
PSO017G4317 Papaver somniferum HOM05D005212 ORTHO05D006353 9.1e-64 248.1 316 46.5
PSO339G5759 Papaver somniferum HOM05D005212 ORTHO05D006353 7.7e-63 245.0 316 45.9
ATR0829G227 Amborella trichopoda HOM05D005212 ORTHO05D006353 2.5e-61 240.0 229 54.1
Ca_09937_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 1.6e-60 237.3 246 54.9
Ca_09949_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 1.6e-60 237.3 246 54.9
Zm00001eb210590 Zea mays HOM05D005212 ORTHO05D006353 3.0e-59 233.0 341 41.9
Mapoly0006s0099 Marchantia polymorpha HOM05D005212 ORTHO05D006353 2.6e-58 229.9 276 45.3
BcaC01g05169 Brassica carinata HOM05D005212 ORTHO05D006353 4.5e-55 219.2 258 49.2
AUR62014219 Chenopodium quinoa HOM05D005212 ORTHO05D006353 7.7e-55 218.4 284 45.1
CiPaw.06G048200 Carya illinoinensis HOM05D005212 ORTHO05D006353 5.2e-51 205.7 299 46.5
AagrBONN_evm.TU.Sc2ySwM_344.3756 Anthoceros agrestis HOM05D005212 ORTHO05D006353 1.2e-50 204.5 255 44.7
AUR62025478 Chenopodium quinoa HOM05D005212 ORTHO05D006353 1.5e-50 204.1 176 58.5
Pp3c25_10280 Physcomitrium patens HOM05D005212 ORTHO05D006353 1.5e-50 204.1 241 46.5
SMO334G0102 Selaginella moellendorffii HOM05D005212 ORTHO05D006353 2.6e-50 203.4 224 49.1
BcaNung07052 Brassica carinata HOM05D005212 ORTHO05D006353 2.2e-49 200.3 306 40.2
Cc04_g08850 Coffea canephora HOM05D005212 ORTHO05D006353 8.3e-49 198.4 145 65.5
AT5G03830 Arabidopsis thaliana HOM05D005212 ORTHO05D006353 9.1e-48 194.9 257 46.3
AL6G13400 Arabidopsis lyrata HOM05D005212 ORTHO05D006353 2.5e-45 186.8 289 41.5
Cpa.g.sc1084.4 Carica papaya HOM05D005212 ORTHO05D006353 2.3e-43 180.3 133 63.9
BolC3t15307H Brassica oleracea HOM05D005212 ORTHO05D006353 5.2e-43 179.1 194 51.0
CDE04G0882 Ceratophyllum demersum HOM05D005212 ORTHO05D006353 5.7e-42 175.6 143 59.4
Cc04_g08860 Coffea canephora HOM05D005212 ORTHO05D006353 8.3e-41 171.8 161 59.0
AUR62014218 Chenopodium quinoa HOM05D005212 ORTHO05D006353 1.4e-40 171.0 206 46.1
BcaB01g03308 Brassica carinata HOM05D005212 ORTHO05D006353 4.5e-39 166.0 214 44.4
Hund24107 Selenicereus undatus HOM05D005212 ORTHO05D006353 7.7e-39 165.2 141 60.3
AUR62018080 Chenopodium quinoa HOM05D005212 ORTHO05D006353 3.8e-38 162.9 305 36.1
C03p29590 Brassica napus HOM05D005212 ORTHO05D006353 1.8e-35 154.1 263 38.8
unitig_22.g5595 Utricularia gibba HOM05D005212 ORTHO05D006353 2.6e-34 150.2 122 63.1
Thhalv10015472m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 3.4e-34 149.8 155 54.2
COL.COLO4_35970 Corchorus olitorius HOM05D005212 ORTHO05D006353 7.5e-34 148.7 150 52.7
MCO05G230 Micromonas commoda HOM05D005212 ORTHO05D006353 7.0e-32 142.1 223 39.0
unitig_22.g5596 Utricularia gibba HOM05D005212 ORTHO05D006353 3.5e-31 139.8 89 73.0
CBR_g30204 Chara braunii HOM05D000019 ORTHO05D000353 3.9e-30 136.3 159 47.2
Cre03.g200991 Chlamydomonas reinhardtii HOM05D005212 ORTHO05D006353 7.3e-29 132.1 259 33.2
SEGI_04595 Sequoiadendron giganteum HOM05D005212 ORTHO05D006353 2.8e-28 130.2 155 46.5
AUR62014216 Chenopodium quinoa HOM05D005212 ORTHO05D006353 1.8e-27 127.5 211 38.9
Sabra11G0142300 Salix brachista HOM05D005212 ORTHO05D006353 4.1e-24 116.3 77 66.2
Aqoxy6G02632 Aquilegia oxysepala HOM05D005212 ORTHO05D006353 9.2e-16 88.6 58 72.4
Peaxi162Scf00376g00010 Petunia axillaris HOM05D005212 ORTHO05D006353 2.3e-14 84.0 195 32.8
Cfa023609 Carpinus fangiana HOM05D005212 ORTHO05D006353 4.3e-13 79.7 184 26.1
Ca_15863_v3 Cicer arietinum L. HOM05D000681 ORTHO05D011778 3.1e-11 73.6 54 68.5
PRCOL_00004527 Prasinoderma coloniale HOM05D005212 ORTHO05D006353 1.3e-09 68.2 182 32.4


User provided reference genes

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