Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3C827T17 Lonicera japonica HOM05D005143 ORTHO05D006404 1.1e-50 203.0 98 100.0
Dinv02072 Davidia involucrata HOM05D005143 ORTHO05D006404 1.0e-21 106.7 84 60.7
Lj6A685T16 Lonicera japonica HOM05D005143 ORTHO05D006404 1.0e-21 106.7 80 65.0
QL06p011304 Quercus lobata HOM05D005143 ORTHO05D006404 5.2e-21 104.4 84 59.5
CANSAT78G1129 Cannabis sativa HOM05D005143 ORTHO05D006404 3.3e-20 101.7 83 59.0
Manes.15G007000 Manihot esculenta HOM05D005143 ORTHO05D006404 3.3e-20 101.7 80 57.5
Duzib151G0017 Durio zibethinus HOM05D005143 ORTHO05D006404 9.7e-20 100.1 86 61.6
CSS0004405 Camellia sinensis var. sinensis HOM05D005143 ORTHO05D006404 2.2e-19 99.0 74 62.2
Dinv44320 Davidia involucrata HOM05D005143 ORTHO05D006404 2.2e-19 99.0 84 57.1
COL.COLO4_34676 Corchorus olitorius HOM05D005143 ORTHO05D006404 6.3e-19 97.4 72 63.9
CiPaw.02G077100 Carya illinoinensis HOM05D005143 ORTHO05D006404 8.2e-19 97.1 78 60.3
Haze_01089 Corylus avellana HOM05D005143 ORTHO05D006404 8.2e-19 97.1 83 59.0
Sabra08G0082500 Salix brachista HOM05D005143 ORTHO05D006404 3.1e-18 95.1 80 55.0
Potri.008G108900 Populus trichocarpa HOM05D005143 ORTHO05D006404 7.0e-18 94.0 86 53.5
Potri.T170901 Populus trichocarpa HOM05D005143 ORTHO05D006404 7.0e-18 94.0 86 53.5
GSVIVG01035046001 Vitis vinifera HOM05D005143 ORTHO05D006404 7.0e-18 94.0 70 64.3
Actinidia15583 Actinidia chinensis HOM05D005143 ORTHO05D006404 9.1e-18 93.6 80 57.5
Sabra10G0108500 Salix brachista HOM05D005143 ORTHO05D006404 9.1e-18 93.6 82 56.1
Actinidia40351 Actinidia chinensis HOM05D005143 ORTHO05D006404 1.2e-17 93.2 84 57.1
Ciclev10007083m.g Citrus clementina HOM05D005143 ORTHO05D006404 2.0e-17 92.4 80 53.8
Duzib052G1152 Durio zibethinus HOM05D005143 ORTHO05D006404 2.6e-17 92.0 72 62.5
Cpa.g.sc9.99 Carica papaya HOM05D005143 ORTHO05D006404 3.5e-17 91.7 97 52.6
Gorai.011G195900 Gossypium raimondii HOM05D005143 ORTHO05D006404 3.5e-17 91.7 79 58.2
Potri.010G140400 Populus trichocarpa HOM05D005143 ORTHO05D006404 3.5e-17 91.7 86 51.2
TWI09G1317 Tripterygium wilfordii HOM05D005143 ORTHO05D006404 3.5e-17 91.7 81 59.3
BcaC03g17714 Brassica carinata HOM05D005143 ORTHO05D006404 4.5e-17 91.3 69 62.3
A02p38010 Brassica napus HOM05D005143 ORTHO05D006404 4.5e-17 91.3 69 62.3
C02p57210 Brassica napus HOM05D005143 ORTHO05D006404 4.5e-17 91.3 69 62.3
BolC2t11792H Brassica oleracea HOM05D005143 ORTHO05D006404 4.5e-17 91.3 69 62.3
BraA02t08785Z Brassica rapa HOM05D005143 ORTHO05D006404 4.5e-17 91.3 69 62.3
CiPaw.01G142400 Carya illinoinensis HOM05D005143 ORTHO05D006404 4.5e-17 91.3 78 55.1
Cfa015478 Carpinus fangiana HOM05D005143 ORTHO05D006404 5.9e-17 90.9 80 57.5
Glyma.09G039500 Glycine max HOM05D005143 ORTHO05D006404 5.9e-17 90.9 83 55.4
Glyma.15G144700 Glycine max HOM05D005143 ORTHO05D006404 5.9e-17 90.9 83 55.4
Gohir.A10G168900 Gossypium hirsutum HOM05D005143 ORTHO05D006404 5.9e-17 90.9 88 53.4
Gohir.D10G175100 Gossypium hirsutum HOM05D005143 ORTHO05D006404 5.9e-17 90.9 88 53.4
PGR031G1222 Punica granatum HOM05D005143 ORTHO05D006404 5.9e-17 90.9 83 56.6
BcaB07g34148 Brassica carinata HOM05D005143 ORTHO05D006404 7.7e-17 90.5 69 63.8
Thecc.04G294800 Theobroma cacao HOM05D005143 ORTHO05D006404 7.7e-17 90.5 70 64.3
AUR62035066 Chenopodium quinoa HOM05D005143 ORTHO05D006404 1.0e-16 90.1 78 55.1
AUR62043573 Chenopodium quinoa HOM05D005143 ORTHO05D006404 1.0e-16 90.1 78 55.1
Atru.chr4.2951 Acer truncatum HOM05D005143 ORTHO05D006404 1.3e-16 89.7 75 57.3
AL8G22960 Arabidopsis lyrata HOM05D005143 ORTHO05D006404 1.3e-16 89.7 75 58.7
Thhalv10005363m.g Eutrema salsugineum HOM05D005143 ORTHO05D006404 1.3e-16 89.7 75 58.7
Medtr2g034890 Medicago truncatula HOM05D005143 ORTHO05D006404 1.3e-16 89.7 83 53.0
Peaxi162Scf00065g00033 Petunia axillaris HOM05D005143 ORTHO05D006404 1.3e-16 89.7 75 57.3
Phvul.003G110600 Phaseolus vulgaris HOM05D005143 ORTHO05D006404 1.3e-16 89.7 84 54.8
EL10Ac3g04926 Beta vulgaris HOM05D005143 ORTHO05D006404 1.7e-16 89.4 84 50.0
PSO210G3751 Papaver somniferum HOM05D005143 ORTHO05D006404 1.7e-16 89.4 83 53.0
Sp2g19670 Schrenkiella parvula HOM05D005143 ORTHO05D006404 1.7e-16 89.4 69 60.9
vmacro08077 Vaccinium macrocarpon HOM05D005143 ORTHO05D006404 1.7e-16 89.4 70 60.0
Lalb_Chr12g0200981 Lupinus albus HOM05D005143 ORTHO05D006404 2.2e-16 89.0 87 52.9
TAR362G0369 Trochodendron aralioides HOM05D005143 ORTHO05D006404 2.9e-16 88.6 81 54.3
Aqoxy2G02819 Aquilegia oxysepala HOM05D005143 ORTHO05D006404 3.8e-16 88.2 77 59.7
Hma1.2p1_0013F.1_g008930 Hydrangea macrophylla HOM05D005143 ORTHO05D006404 5.0e-16 87.8 82 54.9
MD13G1158800 Malus domestica HOM05D005143 ORTHO05D006404 5.0e-16 87.8 89 53.9
arahy.Tifrunner.gnm1.ann1.PXPP98 Arachis hypogaea HOM05D005143 ORTHO05D006404 6.5e-16 87.4 78 57.7
Nitab4.5_0000169g0050 Nicotiana tabacum HOM05D005143 ORTHO05D006404 6.5e-16 87.4 76 53.9
AT5G49320 Arabidopsis thaliana HOM05D005143 ORTHO05D006404 8.5e-16 87.0 75 57.3
Glyma.17G031200 Glycine max HOM05D005143 ORTHO05D006404 8.5e-16 87.0 84 52.4
PSO761G0512 Papaver somniferum HOM05D005143 ORTHO05D006404 8.5e-16 87.0 83 51.8
Sc25g0003440 Simmondsia chinensis HOM05D005143 ORTHO05D006404 8.5e-16 87.0 89 51.7
Carub.0008s0919 Capsella rubella HOM05D005143 ORTHO05D006404 1.1e-15 86.7 75 58.7
Lj6g0005650 Lotus japonicus HOM05D005143 ORTHO05D006404 1.1e-15 86.7 83 55.4
MBI19_g29991_MAGBIO Magnolia biondii HOM05D005143 ORTHO05D006404 1.1e-15 86.7 80 55.0
BolC7t44512H Brassica oleracea HOM05D005143 ORTHO05D006404 1.5e-15 86.3 69 62.3
Lalb_Chr20g0121021 Lupinus albus HOM05D005143 ORTHO05D006404 1.5e-15 86.3 88 54.5
Nitab4.5_0001695g0020 Nicotiana tabacum HOM05D005143 ORTHO05D006404 1.5e-15 86.3 76 52.6
BcaNung02596 Brassica carinata HOM05D005143 ORTHO05D006404 1.9e-15 85.9 69 62.3
C07p39840 Brassica napus HOM05D005143 ORTHO05D006404 1.9e-15 85.9 69 62.3
CAN.G1016.6 Capsicum annuum HOM05D005143 ORTHO05D006404 1.9e-15 85.9 70 58.6
AUR62016151 Chenopodium quinoa HOM05D005143 ORTHO05D006404 1.9e-15 85.9 77 53.2
arahy.Tifrunner.gnm1.ann1.UTG064 Arachis hypogaea HOM05D005143 ORTHO05D006404 2.5e-15 85.5 79 55.7
MD16G1159000 Malus domestica HOM05D005143 ORTHO05D006404 2.5e-15 85.5 77 55.8
Ah.04g154920 Amaranthus hybridus HOM05D005143 ORTHO05D006404 3.2e-15 85.1 83 49.4
THA.LOC104818896 Tarenaya hassleriana HOM05D005143 ORTHO05D006404 3.2e-15 85.1 69 58.0
TPR.G27704 Trifolium pratense HOM05D005143 ORTHO05D006404 3.2e-15 85.1 83 53.0
Prupe.1G125800 Prunus persica HOM05D005143 ORTHO05D006404 4.2e-15 84.7 83 54.2
Solyc01g060450.3 Solanum lycopersicum HOM05D005143 ORTHO05D006404 4.2e-15 84.7 70 55.7
Sopen01g026590 Solanum pennellii HOM05D005143 ORTHO05D006404 4.2e-15 84.7 70 55.7
PGSC0003DMG400014988 Solanum tuberosum HOM05D005143 ORTHO05D006404 4.2e-15 84.7 70 55.7
Ca_01881_v3 Cicer arietinum L. HOM05D005143 ORTHO05D006404 7.2e-15 84.0 83 51.8
Ca_01895_v3 Cicer arietinum L. HOM05D005143 ORTHO05D006404 7.2e-15 84.0 83 51.8
CARHR182240 Cardamine hirsuta HOM05D005143 ORTHO05D006404 1.6e-14 82.8 75 56.0
Medtr2g034880 Medicago truncatula HOM05D005143 ORTHO05D006404 1.6e-14 82.8 83 51.8
Phvul.009G253600 Phaseolus vulgaris HOM05D005143 ORTHO05D006404 1.6e-14 82.8 83 53.0
VMungo1215G3234 Vigna mungo HOM05D005143 ORTHO05D006404 1.6e-14 82.8 80 51.2
VMungo1309G2864 Vigna mungo HOM05D005143 ORTHO05D006404 1.6e-14 82.8 83 50.6
Psat1g158200 Pisum sativum HOM05D005143 ORTHO05D006404 2.1e-14 82.4 83 50.6
arahy.Tifrunner.gnm1.ann1.RF9CFS Arachis hypogaea HOM05D005143 ORTHO05D006404 2.7e-14 82.0 76 55.3
MELO3C006698.2 Cucumis melo HOM05D005143 ORTHO05D006404 2.7e-14 82.0 73 52.1
CsaV3_3G015020 Cucumis sativus L. HOM05D005143 ORTHO05D006404 2.7e-14 82.0 73 52.1
RcHm_v2.0_Chr4g0424271 Rosa chinensis HOM05D005143 ORTHO05D006404 2.7e-14 82.0 93 50.5
Cc03_g01170 Coffea canephora HOM05D005143 ORTHO05D006404 3.6e-14 81.6 69 59.4
Oeu006437.1 Olea europaea HOM05D005143 ORTHO05D006404 3.6e-14 81.6 76 55.3
arahy.Tifrunner.gnm1.ann1.W9GTE1 Arachis hypogaea HOM05D005143 ORTHO05D006404 4.7e-14 81.3 76 53.9
ECA246G2788 Erigeron canadensis HOM05D005143 ORTHO05D006404 4.7e-14 81.3 83 49.4
SGA_v2.0_scaffold119G32680 Striga asiatica HOM05D005143 ORTHO05D006404 4.7e-14 81.3 74 58.1
Hund02954 Selenicereus undatus HOM05D005143 ORTHO05D006404 6.1e-14 80.9 85 44.7
DCAR_030483 Daucus carota HOM05D005143 ORTHO05D006404 8.0e-14 80.5 79 53.2
Lalb_Chr18g0058921 Lupinus albus HOM05D005143 ORTHO05D006404 8.0e-14 80.5 76 53.9
ClCG05G006400 Citrullus lanatus HOM05D005143 ORTHO05D006404 1.4e-13 79.7 85 49.4
FvH4_4g19280 Fragaria vesca HOM05D005143 ORTHO05D006404 1.4e-13 79.7 81 54.3
FAN07G0192 Fragaria x ananassa HOM05D005143 ORTHO05D006404 1.4e-13 79.7 81 54.3
FAN12G3988 Fragaria x ananassa HOM05D005143 ORTHO05D006404 1.4e-13 79.7 81 54.3
Sed0010751 Sechium edule HOM05D005143 ORTHO05D006404 1.4e-13 79.7 69 53.6
Aa31LG11G7840 Aethionema arabicum HOM05D005143 ORTHO05D006404 1.8e-13 79.3 72 55.6
Migut.N00060 Erythranthe guttata HOM05D005143 ORTHO05D006404 3.0e-13 78.6 78 56.4
Sabra08G0082600 Salix brachista HOM05D005143 ORTHO05D006404 3.0e-13 78.6 87 50.6
TPR.G27702 Trifolium pratense HOM05D005143 ORTHO05D006404 5.2e-13 77.8 83 50.6
HanXRQChr03g0093441 Helianthus annuus HOM05D005143 ORTHO05D006404 6.8e-13 77.4 76 53.9
Nitab4.5_0008735g0010 Nicotiana tabacum HOM05D005143 ORTHO05D006404 8.8e-13 77.0 72 52.8
MSTRG.21781 Avicennia marina HOM05D005143 ORTHO05D006404 1.5e-12 76.3 74 55.4
Nitab4.5_0000531g0070 Nicotiana tabacum HOM05D005143 ORTHO05D006404 5.7e-12 74.3 70 52.9
FAN12G2949 Fragaria x ananassa HOM05D005143 ORTHO05D006404 7.5e-12 73.9 81 53.1
Lsat_1_v5_gn_6_115260 Lactuca sativa HOM05D005143 ORTHO05D006404 7.5e-12 73.9 86 46.5
Rhsim04G0232200 Rhododendron simsii HOM05D005143 ORTHO05D006404 1.3e-11 73.2 51 68.6
Hund11951 Selenicereus undatus HOM05D005143 ORTHO05D006404 2.2e-11 72.4 78 44.9
SalBow5G4838 Salvia bowleyana HOM05D005143 ORTHO05D006404 4.8e-11 71.2 70 52.9
Oeu016479.2 Olea europaea HOM05D005143 ORTHO05D006404 2.4e-10 68.9 78 48.7
Eucgr.A00195 Eucalyptus grandis HOM05D005143 ORTHO05D006404 3.1e-10 68.6 80 47.5
DCAR_002501 Daucus carota HOM05D005143 ORTHO05D006404 4.1e-10 68.2 78 46.2
Nn3g21616 Nelumbo nucifera HOM05D005143 ORTHO05D006404 5.4e-10 67.8 73 50.7
Carub.0008s0727 Capsella rubella HOM05D005143 ORTHO05D006404 7.0e-10 67.4 64 53.1
SGA_v2.0_scaffold91G28048 Striga asiatica HOM05D005143 ORTHO05D006404 1.6e-09 66.2 69 52.2
CDE11G0634 Ceratophyllum demersum HOM05D005143 ORTHO05D006404 1.7e-08 62.8 91 36.3
CDE05G0725 Ceratophyllum demersum HOM05D005143 ORTHO05D006404 5.0e-08 61.2 91 37.4
MBI09_g03808_MAGBIO Magnolia biondii HOM05D005143 ORTHO05D000022 1.9e-07 59.3 79 36.7


User provided reference genes

Program Settings