Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3C823T11 Lonicera japonica HOM05D000654 ORTHO05D002711 2.0e-53 212.2 111 100.0
Lj4A152G33 Lonicera japonica HOM05D000654 ORTHO05D002711 3.8e-44 181.4 110 88.2
TAR381G1297 Trochodendron aralioides HOM05D000654 ORTHO05D002711 3.9e-25 118.2 140 54.3
Actinidia16473 Actinidia chinensis HOM05D000654 ORTHO05D002711 8.2e-23 110.5 114 57.0
Cfa004040 Carpinus fangiana HOM05D000654 ORTHO05D002711 4.0e-22 108.2 129 53.5
QL06p040712 Quercus lobata HOM05D000654 ORTHO05D002711 6.9e-22 107.5 135 50.4
Dinv30010 Davidia involucrata HOM05D000654 ORTHO05D002711 9.0e-22 107.1 123 53.7
Sed0020043 Sechium edule HOM05D000654 ORTHO05D002711 9.0e-22 107.1 134 47.0
TAR625G0928 Trochodendron aralioides HOM05D000654 ORTHO05D002711 1.2e-21 106.7 118 55.9
Manes.13G121000 Manihot esculenta HOM05D000654 ORTHO05D002711 2.0e-21 105.9 131 51.1
Sed0010870 Sechium edule HOM05D000654 ORTHO05D002711 3.4e-21 105.1 134 48.5
CSS0019799 Camellia sinensis var. sinensis HOM05D000654 ORTHO05D002711 4.5e-21 104.8 143 51.0
MD02G1175900 Malus domestica HOM05D000654 ORTHO05D002711 5.8e-21 104.4 114 50.9
Nn5g30356 Nelumbo nucifera HOM05D000654 ORTHO05D002711 7.6e-21 104.0 128 51.6
Potri.005G140300 Populus trichocarpa HOM05D000654 ORTHO05D002711 7.6e-21 104.0 114 50.0
ClCG02G012260 Citrullus lanatus HOM05D000654 ORTHO05D002711 1.7e-20 102.8 134 47.0
MD15G1286300 Malus domestica HOM05D000654 ORTHO05D002711 2.9e-20 102.1 114 50.0
Dinv26842 Davidia involucrata HOM05D000654 ORTHO05D002711 3.8e-20 101.7 139 46.8
Thecc.01G060100 Theobroma cacao HOM05D000654 ORTHO05D002711 6.5e-20 100.9 124 47.6
MELO3C020850.2 Cucumis melo HOM05D000654 ORTHO05D002711 1.4e-19 99.8 134 46.3
Rhsim08G0099300 Rhododendron simsii HOM05D000654 ORTHO05D002711 5.5e-19 97.8 130 49.2
Gohir.A11G195200 Gossypium hirsutum HOM05D000654 ORTHO05D002711 9.3e-19 97.1 124 48.4
CsaV3_2G016410 Cucumis sativus L. HOM05D000654 ORTHO05D002711 1.2e-18 96.7 134 45.5
Duzib147G1504 Durio zibethinus HOM05D000654 ORTHO05D002711 1.6e-18 96.3 111 47.7
Gohir.D11G201400 Gossypium hirsutum HOM05D000654 ORTHO05D002711 2.1e-18 95.9 124 47.6
Oeu017453.2 Olea europaea HOM05D000654 ORTHO05D002711 2.7e-18 95.5 141 44.0
Lj4g0027816 Lotus japonicus HOM05D000654 ORTHO05D002711 3.5e-18 95.1 136 44.1
PSO541G0216 Papaver somniferum HOM05D000654 ORTHO05D002711 4.6e-18 94.7 120 48.3
Cc07_g06180 Coffea canephora HOM05D000654 ORTHO05D002711 6.0e-18 94.4 141 45.4
ECA238G0758 Erigeron canadensis HOM05D000654 ORTHO05D002711 1.0e-17 93.6 128 46.1
PSO675G1061 Papaver somniferum HOM05D000654 ORTHO05D002711 1.0e-17 93.6 118 50.0
vmacro17961 Vaccinium macrocarpon HOM05D000654 ORTHO05D002711 1.8e-17 92.8 129 45.7
DCAR_025746 Daucus carota HOM05D000654 ORTHO05D002711 2.3e-17 92.4 114 48.2
Nn1g04786 Nelumbo nucifera HOM05D000654 ORTHO05D002711 3.0e-17 92.0 130 44.6
Gorai.007G215800 Gossypium raimondii HOM05D000654 ORTHO05D002711 3.9e-17 91.7 124 47.6
FAN23G2009 Fragaria x ananassa HOM05D000654 ORTHO05D002711 1.1e-16 90.1 123 44.7
FAN26G1873 Fragaria x ananassa HOM05D000654 ORTHO05D002711 1.1e-16 90.1 123 44.7
Peaxi162Scf00549g00019 Petunia axillaris HOM05D000654 ORTHO05D002711 1.5e-16 89.7 136 45.6
RcHm_v2.0_Chr2g0106201 Rosa chinensis HOM05D000654 ORTHO05D002711 1.9e-16 89.4 125 46.4
Lalb_Chr05g0226431 Lupinus albus HOM05D000654 ORTHO05D002711 5.7e-16 87.8 123 42.3
FvH4_1g16340 Fragaria vesca HOM05D000654 ORTHO05D002711 7.4e-16 87.4 123 43.9
FAN19G0868 Fragaria x ananassa HOM05D000654 ORTHO05D002711 7.4e-16 87.4 123 43.9
ECA232G1682 Erigeron canadensis HOM05D000654 ORTHO05D002711 1.6e-15 86.3 114 43.9
HanXRQChr09g0263601 Helianthus annuus HOM05D000654 ORTHO05D002711 1.6e-15 86.3 105 44.8
CiPaw.02G007300 Carya illinoinensis HOM05D000654 ORTHO05D002711 2.2e-15 85.9 139 45.3
FAN28G1367 Fragaria x ananassa HOM05D000654 ORTHO05D002711 2.2e-15 85.9 123 43.9
Solyc02g093160.3 Solanum lycopersicum HOM05D000654 ORTHO05D002711 3.7e-15 85.1 134 44.8
Sopen02g037730 Solanum pennellii HOM05D000654 ORTHO05D002711 3.7e-15 85.1 134 44.8
Aqoxy6G01261 Aquilegia oxysepala HOM05D000654 ORTHO05D002711 1.1e-14 83.6 141 44.0
Oeu007929.1 Olea europaea HOM05D000654 ORTHO05D002711 1.1e-14 83.6 135 40.7
PGSC0003DMG400004007 Solanum tuberosum HOM05D000654 ORTHO05D002711 5.3e-14 81.3 129 42.6
Glyma.17G170600 Glycine max HOM05D000654 ORTHO05D002711 6.9e-14 80.9 136 41.2
Eucgr.H01691 Eucalyptus grandis HOM05D000654 ORTHO05D002711 9.0e-14 80.5 135 37.8
Ca_22150_v3 Cicer arietinum L. HOM05D000654 ORTHO05D002711 2.0e-13 79.3 135 40.0
Aqoxy5G01187 Aquilegia oxysepala HOM05D000654 ORTHO05D002711 2.6e-13 79.0 128 39.8
Nitab4.5_0001221g0040 Nicotiana tabacum HOM05D000654 ORTHO05D002711 2.6e-13 79.0 121 44.6
Sc16g0004590 Simmondsia chinensis HOM05D000654 ORTHO05D002711 3.4e-13 78.6 106 46.2
Oeu009820.1 Olea europaea HOM05D000654 ORTHO05D002711 4.5e-13 78.2 135 37.8
arahy.Tifrunner.gnm1.ann1.5Z1D6W Arachis hypogaea HOM05D000654 ORTHO05D002711 7.6e-13 77.4 135 37.0
arahy.Tifrunner.gnm1.ann1.RQMB8Y Arachis hypogaea HOM05D000654 ORTHO05D002711 7.6e-13 77.4 135 37.0
CiPaw.01G015400 Carya illinoinensis HOM05D000654 ORTHO05D002711 7.6e-13 77.4 102 52.0
Glyma.01G188200 Glycine max HOM05D000654 ORTHO05D002711 7.6e-13 77.4 130 40.0
Eucgr.H02071 Eucalyptus grandis HOM05D000654 ORTHO05D002711 1.0e-12 77.0 135 37.0
Prupe.6G231800 Prunus persica HOM05D000654 ORTHO05D002711 1.3e-12 76.6 112 42.0
COL.COLO4_24562 Corchorus olitorius HOM05D000654 ORTHO05D002711 2.2e-12 75.9 123 39.0
Nitab4.5_0002765g0080 Nicotiana tabacum HOM05D000654 ORTHO05D002711 2.9e-12 75.5 116 44.8
Gohir.A03G187900 Gossypium hirsutum HOM05D000654 ORTHO05D002711 5.0e-12 74.7 130 38.5
Potri.007G046100 Populus trichocarpa HOM05D000654 ORTHO05D002711 5.0e-12 74.7 111 42.3
Dinv15735 Davidia involucrata HOM05D000654 ORTHO05D002711 8.5e-12 73.9 106 44.3
Atru.chr3.292 Acer truncatum HOM05D000654 ORTHO05D002711 2.5e-11 72.4 115 40.0
MSTRG.23734 Avicennia marina HOM05D000654 ORTHO05D002711 4.2e-11 71.6 126 38.1
Phvul.002G017000 Phaseolus vulgaris HOM05D000654 ORTHO05D002711 4.2e-11 71.6 130 38.5
Manes.12G106300 Manihot esculenta HOM05D000654 ORTHO05D002711 5.5e-11 71.2 125 39.2
MSTRG.15381 Avicennia marina HOM05D000654 ORTHO05D002711 9.4e-11 70.5 140 38.6
CSS0004077 Camellia sinensis var. sinensis HOM05D000654 ORTHO05D002711 1.6e-10 69.7 110 45.5
CSS0018882 Camellia sinensis var. sinensis HOM05D000654 ORTHO05D002711 1.6e-10 69.7 110 45.5
Ciclev10024767m.g Citrus clementina HOM05D000654 ORTHO05D002711 1.6e-10 69.7 53 62.3
Lsat_1_v5_gn_4_165141 Lactuca sativa HOM05D000654 ORTHO05D002711 3.6e-10 68.6 107 41.1
Sabra07G0041200 Salix brachista HOM05D000654 ORTHO05D002711 3.6e-10 68.6 116 41.4
VMungo1215G0018 Vigna mungo HOM05D000654 ORTHO05D002711 3.6e-10 68.6 128 39.1
CANSAT25G0706 Cannabis sativa HOM05D000654 ORTHO05D002711 6.1e-10 67.8 88 45.5
Glyma.11G053900 Glycine max HOM05D000654 ORTHO05D002711 1.0e-09 67.0 130 39.2
Gohir.D02G208700 Gossypium hirsutum HOM05D000654 ORTHO05D002711 1.0e-09 67.0 124 37.1
Gorai.005G236700 Gossypium raimondii HOM05D000654 ORTHO05D002711 1.0e-09 67.0 124 37.1
Lj2g0008691 Lotus japonicus HOM05D000654 ORTHO05D002711 1.0e-09 67.0 125 36.0
CiPaw.06G171400 Carya illinoinensis HOM05D000654 ORTHO05D002711 1.8e-09 66.2 124 38.7
Ca_24753_v3 Cicer arietinum L. HOM05D000654 ORTHO05D002711 1.8e-09 66.2 108 41.7
Duzib052G0555 Durio zibethinus HOM05D000654 ORTHO05D002711 1.8e-09 66.2 141 36.2
Phvul.003G242100 Phaseolus vulgaris HOM05D000654 ORTHO05D002711 1.8e-09 66.2 104 37.5
Cpa.g.sc55.117 Carica papaya HOM05D000654 ORTHO05D002711 2.3e-09 65.9 139 36.0
Psat4g085480 Pisum sativum HOM05D000654 ORTHO05D002711 5.1e-09 64.7 52 57.7
arahy.Tifrunner.gnm1.ann1.X4GZC6 Arachis hypogaea HOM05D000654 ORTHO05D002711 6.7e-09 64.3 91 44.0
Gohir.D03G024200 Gossypium hirsutum HOM05D000654 ORTHO05D002711 8.8e-09 63.9 110 38.2
Dinv42171 Davidia involucrata HOM05D000654 ORTHO05D002711 1.5e-08 63.2 112 38.4
Duzib132G0921 Durio zibethinus HOM05D000654 ORTHO05D002711 1.9e-08 62.8 137 35.0
Glyma.05G091800 Glycine max HOM05D000654 ORTHO05D002711 1.9e-08 62.8 78 47.4
Gorai.003G025700 Gossypium raimondii HOM05D000654 ORTHO05D002711 1.9e-08 62.8 110 38.2
TWI09G0346 Tripterygium wilfordii HOM05D000654 ORTHO05D002711 2.5e-08 62.4 134 37.3
HanXRQChr14g0448971 Helianthus annuus HOM05D000654 ORTHO05D002711 3.3e-08 62.0 52 59.6
TPR.G14582 Trifolium pratense HOM05D000654 ORTHO05D002711 3.3e-08 62.0 52 55.8
AT2G23360 Arabidopsis thaliana HOM05D000654 ORTHO05D002711 4.3e-08 61.6 115 34.8
Medtr4g094848 Medicago truncatula HOM05D000654 ORTHO05D002711 4.3e-08 61.6 138 33.3
THA.LOC104807592 Tarenaya hassleriana HOM05D000654 ORTHO05D002711 4.3e-08 61.6 108 42.6
TWI73G1036 Tripterygium wilfordii HOM05D000654 ORTHO05D002711 4.3e-08 61.6 120 40.0
CSS0003390 Camellia sinensis var. sinensis HOM05D000654 ORTHO05D002711 5.7e-08 61.2 106 40.6
CSS0039056 Camellia sinensis var. sinensis HOM05D000654 ORTHO05D002711 5.7e-08 61.2 106 40.6
AUR62001903 Chenopodium quinoa HOM05D000654 ORTHO05D002711 7.4e-08 60.8 108 40.7
arahy.Tifrunner.gnm1.ann1.WU01D9 Arachis hypogaea HOM05D000654 ORTHO05D002711 9.7e-08 60.5 96 39.6
MD05G1084800 Malus domestica HOM05D000654 ORTHO05D002711 9.7e-08 60.5 117 38.5
HPP92_026438 Vanilla planifolia HOM05D000654 ORTHO05D002711 9.7e-08 60.5 128 37.5
AUR62003909 Chenopodium quinoa HOM05D000654 ORTHO05D002711 1.7e-07 59.7 111 41.4
COL.COLO4_32628 Corchorus olitorius HOM05D000654 ORTHO05D002711 1.7e-07 59.7 128 34.4
Gohir.A02G156500 Gossypium hirsutum HOM05D000654 ORTHO05D002711 1.7e-07 59.7 108 36.1
TWI79G0417 Tripterygium wilfordii HOM05D000654 ORTHO05D002711 1.7e-07 59.7 138 32.6
VMungo0251G1475 Vigna mungo HOM05D000654 ORTHO05D002711 2.2e-07 59.3 57 52.6
A04p17850 Brassica napus HOM05D000654 ORTHO05D002711 2.8e-07 58.9 111 37.8
C04p52750 Brassica napus HOM05D000654 ORTHO05D002711 2.8e-07 58.9 115 37.4
BraA04t17404Z Brassica rapa HOM05D000654 ORTHO05D002711 2.8e-07 58.9 111 37.8
Aa31LG7G13610 Aethionema arabicum HOM05D000654 ORTHO05D002711 4.8e-07 58.2 42 64.3
AL4G13270 Arabidopsis lyrata HOM05D000654 ORTHO05D002711 4.8e-07 58.2 115 33.9
Medtr5g016830 Medicago truncatula HOM05D000654 ORTHO05D002711 4.8e-07 58.2 113 37.2
Thecc.02G103700 Theobroma cacao HOM05D000654 ORTHO05D002711 4.8e-07 58.2 139 33.8
TWI31G1307 Tripterygium wilfordii HOM05D000654 ORTHO05D002711 8.2e-07 57.4 139 31.7
Rhsim11G0164000 Rhododendron simsii HOM05D000654 ORTHO05D002711 1.8e-06 56.2 104 42.3
GSVIVG01022085001 Vitis vinifera HOM05D000654 ORTHO05D002711 1.8e-06 56.2 30 76.7
Carub.0004s0256 Capsella rubella HOM05D000654 ORTHO05D002711 3.1e-06 55.5 115 31.3
Ca_18710_v3 Cicer arietinum L. HOM05D000654 ORTHO05D002711 4.1e-06 55.1 117 35.9
Sp4g02370 Schrenkiella parvula HOM05D000654 ORTHO05D002711 4.1e-06 55.1 112 33.9
BcaB06g27895 Brassica carinata HOM05D000654 ORTHO05D002711 5.3e-06 54.7 110 37.3
Psat2g168560 Pisum sativum HOM05D000654 ORTHO05D002711 5.3e-06 54.7 107 34.6
CiPaw.01G015700 Carya illinoinensis HOM05D000654 ORTHO05D002711 6.9e-06 54.3 90 47.8


User provided reference genes

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