Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3C822G9 Lonicera japonica HOM05D007614 ORTHO05D009538 0.0e+00 2353.6 1223 100.0
Dinv29737 Davidia involucrata HOM05D007614 ORTHO05D009538 0.0e+00 1521.1 1232 66.5
CSS0029892 Camellia sinensis var. sinensis HOM05D007614 ORTHO05D009538 0.0e+00 1491.9 1233 66.3
TAR365G0799 Trochodendron aralioides HOM05D007614 ORTHO05D009538 0.0e+00 1466.1 1240 64.8
CSS0000522 Camellia sinensis var. sinensis HOM05D007614 ORTHO05D009538 0.0e+00 1464.5 1233 65.5
GSVIVG01035126001 Vitis vinifera HOM05D007614 ORTHO05D009538 0.0e+00 1447.6 1224 64.1
QL06p010082 Quercus lobata HOM05D007614 ORTHO05D009538 0.0e+00 1429.8 1233 62.9
CiPaw.02G080700 Carya illinoinensis HOM05D007614 ORTHO05D009538 0.0e+00 1380.2 1232 60.6
Cfa015415 Carpinus fangiana HOM05D007614 ORTHO05D009538 0.0e+00 1378.6 1234 60.5
MD13G1166500 Malus domestica HOM05D007614 ORTHO05D009538 0.0e+00 1357.0 1232 60.5
RcHm_v2.0_Chr4g0423071 Rosa chinensis HOM05D007614 ORTHO05D009538 0.0e+00 1353.2 1236 61.2
Haze_01174 Corylus avellana HOM05D007614 ORTHO05D009538 0.0e+00 1349.7 1231 59.9
Oeu006410.1 Olea europaea HOM05D007614 ORTHO05D009538 0.0e+00 1337.4 1230 60.7
FvH4_4g18510 Fragaria vesca HOM05D007614 ORTHO05D009538 0.0e+00 1336.6 1239 60.3
Atru.chr6.1993 Acer truncatum HOM05D007614 ORTHO05D009538 0.0e+00 1335.1 1231 60.4
FAN17G0278 Fragaria x ananassa HOM05D007614 ORTHO05D009538 0.0e+00 1327.0 1239 60.0
Ciclev10004153m.g Citrus clementina HOM05D007614 ORTHO05D009538 0.0e+00 1312.4 1215 59.4
FAN07G2176 Fragaria x ananassa HOM05D007614 ORTHO05D009538 0.0e+00 1312.0 1247 59.3
DCAR_027058 Daucus carota HOM05D007614 ORTHO05D009538 0.0e+00 1303.1 1204 60.9
Nitab4.5_0000513g0110 Nicotiana tabacum HOM05D007614 ORTHO05D009538 0.0e+00 1297.0 1248 57.9
Duzib151G0258 Durio zibethinus HOM05D007614 ORTHO05D009538 0.0e+00 1293.5 1236 57.6
FAN12G3001 Fragaria x ananassa HOM05D007614 ORTHO05D009538 0.0e+00 1293.5 1238 59.0
FAN12G0400 Fragaria x ananassa HOM05D007614 ORTHO05D009538 0.0e+00 1286.9 1240 58.9
Nitab4.5_0002628g0040 Nicotiana tabacum HOM05D007614 ORTHO05D009538 0.0e+00 1286.6 1247 57.0
Peaxi162Scf00065g01533 Petunia axillaris HOM05D007614 ORTHO05D009538 0.0e+00 1284.2 1253 57.3
Cc03_g01650 Coffea canephora HOM05D007614 ORTHO05D009538 0.0e+00 1280.0 1239 57.7
Nn3g21526 Nelumbo nucifera HOM05D007614 ORTHO05D009538 0.0e+00 1278.8 1236 57.8
MBI19_g34788_MAGBIO Magnolia biondii HOM05D007614 ORTHO05D009538 0.0e+00 1277.7 1251 56.9
Potri.010G011800 Populus trichocarpa HOM05D007614 ORTHO05D009538 0.0e+00 1274.6 1235 58.1
Aqoxy2G02920 Aquilegia oxysepala HOM05D007614 ORTHO05D009538 0.0e+00 1273.8 1240 56.9
TWI73G0642 Tripterygium wilfordii HOM05D007614 ORTHO05D009538 0.0e+00 1266.5 1234 57.5
Sabra10G0007500 Salix brachista HOM05D007614 ORTHO05D009538 0.0e+00 1259.2 1233 57.0
SalBow2G0719 Salvia bowleyana HOM05D007614 ORTHO05D009538 0.0e+00 1255.0 1231 56.3
Gorai.006G076700 Gossypium raimondii HOM05D007614 ORTHO05D009538 0.0e+00 1248.4 1235 56.9
SGA_v2.0_scaffold67G22611 Striga asiatica HOM05D007614 ORTHO05D009538 0.0e+00 1246.9 1258 55.3
CANSAT78G1530 Cannabis sativa HOM05D007614 ORTHO05D009538 0.0e+00 1242.3 1238 56.5
Sopen01g028150 Solanum pennellii HOM05D007614 ORTHO05D009538 0.0e+00 1240.7 1196 57.6
ECA240G3304 Erigeron canadensis HOM05D007614 ORTHO05D009538 0.0e+00 1234.6 1159 59.2
COL.COLO4_37910 Corchorus olitorius HOM05D007614 ORTHO05D009538 0.0e+00 1234.2 1234 56.2
Solyc01g066610.4 Solanum lycopersicum HOM05D007614 ORTHO05D009538 0.0e+00 1233.8 1196 57.4
PSO407G0339 Papaver somniferum HOM05D007614 ORTHO05D009538 0.0e+00 1209.1 1251 54.9
Sc13g0003320 Simmondsia chinensis HOM05D007614 ORTHO05D009538 0.0e+00 1200.3 1243 53.2
PGR031G0733 Punica granatum HOM05D007614 ORTHO05D009538 0.0e+00 1198.3 1233 54.0
Lsat_1_v5_gn_6_96381 Lactuca sativa HOM05D007614 ORTHO05D009538 0.0e+00 1186.4 1227 55.3
Prupe.1G132900 Prunus persica HOM05D007614 ORTHO05D009538 0.0e+00 1165.2 1100 58.3
THA.LOC104827336 Tarenaya hassleriana HOM05D007614 ORTHO05D009538 0.0e+00 1155.6 1245 52.0
CARHR182630 Cardamine hirsuta HOM05D007614 ORTHO05D009538 0.0e+00 1095.1 1223 51.8
PGSC0003DMG400011332 Solanum tuberosum HOM05D007614 ORTHO05D009538 0.0e+00 1088.2 1048 56.8
Thhalv10003518m.g Eutrema salsugineum HOM05D007614 ORTHO05D009538 0.0e+00 1087.4 1186 51.9
C02p57050 Brassica napus HOM05D007614 ORTHO05D009538 0.0e+00 1085.1 1172 51.5
BolC2t11775H Brassica oleracea HOM05D007614 ORTHO05D009538 0.0e+00 1085.1 1209 50.9
AL8G22620 Arabidopsis lyrata HOM05D007614 ORTHO05D009538 0.0e+00 1083.9 1150 52.7
AT5G49110 Arabidopsis thaliana HOM05D007614 ORTHO05D009538 0.0e+00 1079.7 1147 52.7
A02p37890 Brassica napus HOM05D007614 ORTHO05D009538 0.0e+00 1079.3 1248 49.2
BcaB07g34217 Brassica carinata HOM05D007614 ORTHO05D009538 1.7e-311 1072.8 1200 51.3
Thecc.04G287600 Theobroma cacao HOM05D007614 ORTHO05D009538 3.8e-307 1058.5 1042 57.4
BraA02t08773Z Brassica rapa HOM05D007614 ORTHO05D009538 3.0e-304 1048.9 1227 49.1
ATR0796G125 Amborella trichopoda HOM05D007614 ORTHO05D009538 6.2e-289 998.0 1241 47.6
Gohir.A09G063000 Gossypium hirsutum HOM05D007614 ORTHO05D009538 8.9e-288 994.2 1047 54.0
Manes.03G197500 Manihot esculenta HOM05D007614 ORTHO05D009538 4.1e-285 985.3 945 56.1
Gohir.D09G062000 Gossypium hirsutum HOM05D007614 ORTHO05D009538 6.0e-284 981.5 1049 54.0
BcaC03g17700 Brassica carinata HOM05D007614 ORTHO05D009538 1.7e-283 979.9 1209 47.6
Eucgr.B01588 Eucalyptus grandis HOM05D007614 ORTHO05D009538 7.3e-266 921.4 966 53.7
HPP92_013726 Vanilla planifolia HOM05D007614 ORTHO05D009538 2.1e-265 919.8 1239 44.4
Cpa.g.sc16.197 Carica papaya HOM05D007614 ORTHO05D009538 6.9e-264 914.8 849 59.8
SEGI_15090 Sequoiadendron giganteum HOM05D007614 ORTHO05D009538 6.6e-259 898.3 1284 42.9
Hma1.2p1_1807F.1_g303400 Hydrangea macrophylla HOM05D007614 ORTHO05D009538 1.1e-256 891.0 664 70.3
Hma1.2p1_0804F.1_g220930 Hydrangea macrophylla HOM05D007614 ORTHO05D009538 4.6e-244 849.0 664 67.8
Zm00001eb016350 Zea mays HOM05D007614 ORTHO05D009538 3.7e-233 812.8 1272 39.9
CAN.G421.11 Capsicum annuum HOM05D007614 ORTHO05D009538 3.3e-202 709.9 871 48.8
CDE01G0153 Ceratophyllum demersum HOM05D007614 ORTHO05D009538 4.8e-201 706.1 1254 38.1
BcaC03g17696 Brassica carinata HOM05D007614 ORTHO05D009538 1.0e-195 688.3 773 49.9
Migut.G00138 Erythranthe guttata HOM05D007614 ORTHO05D009538 4.7e-188 662.9 504 66.9
Mapoly0051s0073 Marchantia polymorpha HOM05D007614 ORTHO05D009538 5.0e-174 616.3 1270 35.7
AagrBONN_evm.TU.Sc2ySwM_344.1704 Anthoceros agrestis HOM05D007614 ORTHO05D009538 1.4e-171 608.2 1229 36.6
AagrBONN_evm.TU.Sc2ySwM_344.1702 Anthoceros agrestis HOM05D007614 ORTHO05D009538 2.6e-170 604.0 1217 36.5
Actinidia00005 Actinidia chinensis HOM05D007614 ORTHO05D009538 1.3e-169 601.7 528 60.6
Pp3c13_17960 Physcomitrium patens HOM05D007614 ORTHO05D009538 1.2e-167 595.1 1325 34.1
HanXRQChr03g0089461 Helianthus annuus HOM05D007614 ORTHO05D009538 4.7e-164 583.2 440 69.3
Migut.G00137 Erythranthe guttata HOM05D007614 ORTHO05D009538 1.3e-137 495.4 670 47.5
MSTRG.3900 Avicennia marina HOM05D007614 ORTHO05D009538 3.5e-119 434.1 474 53.4
CBR_g12376 Chara braunii HOM05D007614 ORTHO05D009538 2.0e-101 375.2 1333 27.9
HanXRQChr03g0089481 Helianthus annuus HOM05D007614 ORTHO05D009538 8.8e-86 323.2 296 59.5
BcaC03g17697 Brassica carinata HOM05D007614 ORTHO05D009538 4.2e-80 304.3 378 49.2
Cpa.g.c41899 Carica papaya HOM05D007614 ORTHO05D009538 1.4e-70 272.7 272 56.6
CAN.G421.12 Capsicum annuum HOM05D007614 ORTHO05D009538 1.4e-62 246.1 288 53.8
Cc01_g15100 Coffea canephora HOM05D007614 ORTHO05D009538 9.8e-53 213.4 251 51.4
HanXRQChr03g0089471 Helianthus annuus HOM05D007614 ORTHO05D009538 9.2e-51 206.8 289 44.3
BcaB01g01537 Brassica carinata HOM05D007614 ORTHO05D009538 1.8e-46 192.6 153 62.1
Eucgr.B01587 Eucalyptus grandis HOM05D007614 ORTHO05D009538 9.9e-45 186.8 204 52.5
Actinidia14288 Actinidia chinensis HOM05D007614 ORTHO05D009538 2.5e-40 172.2 120 75.8
Actinidia27756 Actinidia chinensis HOM05D007614 ORTHO05D009538 3.5e-34 151.8 104 78.8
BcaB04g20478 Brassica carinata HOM05D007614 ORTHO05D009538 3.2e-27 128.6 103 60.2
Os03g0341200 Oryza sativa ssp. japonica HOM05D007614 ORTHO05D009538 4.9e-20 104.8 155 49.0
Zm00001eb167500 Zea mays HOM05D000563 ORTHO05D009538 4.5e-13 81.6 118 44.9
Actinidia14287 Actinidia chinensis HOM05D065619 ORTHO05D037991 7.9e-10 70.9 92 51.1
Cre07.g314700 Chlamydomonas reinhardtii HOM05D058327 ORTHO05D009538 4.3e-08 65.1 285 23.2
Os05g0314700 Oryza sativa ssp. japonica HOM05D007614 ORTHO05D009538 3.1e-06 58.9 104 37.5


User provided reference genes

Program Settings