Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3C806G12 Lonicera japonica HOM05D003956 ORTHO05D004850 0.0e+00 1876.3 951 100.0
Dinv44455 Davidia involucrata HOM05D003956 ORTHO05D004850 0.0e+00 1594.7 977 83.6
Rhsim04G0213100 Rhododendron simsii HOM05D003956 ORTHO05D004850 0.0e+00 1583.2 978 83.3
TAR365G1004 Trochodendron aralioides HOM05D003956 ORTHO05D004850 0.0e+00 1578.9 979 81.9
Actinidia23451 Actinidia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1573.9 974 83.0
PGR004G0287 Punica granatum HOM05D003956 ORTHO05D004850 0.0e+00 1572.8 974 82.4
Atru.chr4.2704 Acer truncatum HOM05D003956 ORTHO05D004850 0.0e+00 1559.3 979 82.0
GSVIVG01017850001 Vitis vinifera HOM05D003956 ORTHO05D004850 0.0e+00 1556.6 975 82.1
Actinidia40209 Actinidia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1555.8 977 81.6
Cfa015539 Carpinus fangiana HOM05D003956 ORTHO05D004850 0.0e+00 1553.5 981 81.5
Prupe.1G146600 Prunus persica HOM05D003956 ORTHO05D004850 0.0e+00 1548.9 976 80.9
QL06p006231 Quercus lobata HOM05D003956 ORTHO05D004850 0.0e+00 1544.6 983 80.0
Peaxi162Scf00095g00414 Petunia axillaris HOM05D003956 ORTHO05D004850 0.0e+00 1541.9 980 80.5
CANSAT78G1736 Cannabis sativa HOM05D003956 ORTHO05D004850 0.0e+00 1541.6 980 80.2
Nitab4.5_0000059g0230 Nicotiana tabacum HOM05D003956 ORTHO05D004850 0.0e+00 1540.0 994 80.2
Eucgr.H03642 Eucalyptus grandis HOM05D003956 ORTHO05D004850 0.0e+00 1537.3 972 80.9
Nitab4.5_0010477g0010 Nicotiana tabacum HOM05D003956 ORTHO05D004850 0.0e+00 1536.2 1007 79.0
Sopen01g032260 Solanum pennellii HOM05D003956 ORTHO05D004850 0.0e+00 1534.6 977 80.0
CiPaw.01G156600 Carya illinoinensis HOM05D003956 ORTHO05D004850 0.0e+00 1532.7 974 80.6
Gorai.011G181800 Gossypium raimondii HOM05D003956 ORTHO05D004850 0.0e+00 1530.8 990 79.5
Duzib212G0153 Durio zibethinus HOM05D003956 ORTHO05D004850 0.0e+00 1530.4 987 80.0
Solyc01g080460.3 Solanum lycopersicum HOM05D003956 ORTHO05D004850 0.0e+00 1530.4 977 79.6
CAN.G889.10 Capsicum annuum HOM05D003956 ORTHO05D004850 0.0e+00 1530.0 980 80.6
Sed0002405 Sechium edule HOM05D003956 ORTHO05D004850 0.0e+00 1530.0 959 81.1
MD13G1177500 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1529.6 984 79.6
Manes.03G188300 Manihot esculenta HOM05D003956 ORTHO05D004850 0.0e+00 1529.2 976 80.8
Cc03_g02730 Coffea canephora HOM05D003956 ORTHO05D004850 0.0e+00 1528.8 979 79.4
Ciclev10006837m.g Citrus clementina HOM05D003956 ORTHO05D004850 0.0e+00 1528.5 1007 78.7
Haze_01011 Corylus avellana HOM05D003956 ORTHO05D004850 0.0e+00 1527.7 964 81.2
Potri.010G027800 Populus trichocarpa HOM05D003956 ORTHO05D004850 0.0e+00 1526.9 981 80.4
Gohir.D10G162900 Gossypium hirsutum HOM05D003956 ORTHO05D004850 0.0e+00 1525.4 990 79.4
CsaV3_3G013930 Cucumis sativus L. HOM05D003956 ORTHO05D004850 0.0e+00 1522.3 976 80.0
Aqoxy2G03183 Aquilegia oxysepala HOM05D003956 ORTHO05D004850 0.0e+00 1519.6 977 80.5
MD16G1179500 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1517.7 960 80.6
TWI09G0935 Tripterygium wilfordii HOM05D003956 ORTHO05D004850 0.0e+00 1517.3 915 83.7
CSS0033563 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 0.0e+00 1510.0 877 86.7
Sabra10G0012900 Salix brachista HOM05D003956 ORTHO05D004850 0.0e+00 1505.7 981 79.3
Nn3g21184 Nelumbo nucifera HOM05D003956 ORTHO05D004850 0.0e+00 1500.7 909 82.9
ECA240G3955 Erigeron canadensis HOM05D003956 ORTHO05D004850 0.0e+00 1499.2 920 82.6
Migut.G00282 Erythranthe guttata HOM05D003956 ORTHO05D004850 0.0e+00 1498.0 877 84.6
Glyma.07G253700 Glycine max HOM05D003956 ORTHO05D004850 0.0e+00 1497.3 978 79.2
RcHm_v2.0_Chr4g0420131 Rosa chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1493.8 978 78.1
Glyma.17G020600 Glycine max HOM05D003956 ORTHO05D004850 0.0e+00 1492.6 978 78.9
Hund20662 Selenicereus undatus HOM05D003956 ORTHO05D004850 0.0e+00 1491.9 972 78.3
Ca_21564_v3 Cicer arietinum L. HOM05D003956 ORTHO05D004850 0.0e+00 1488.4 890 84.2
VMungo1215G0684 Vigna mungo HOM05D003956 ORTHO05D004850 0.0e+00 1488.4 977 78.8
FvH4_4g16670 Fragaria vesca HOM05D003956 ORTHO05D004850 0.0e+00 1487.2 975 77.9
TPR.G28132 Trifolium pratense HOM05D003956 ORTHO05D004850 0.0e+00 1486.1 975 78.8
Lj4g0014830 Lotus japonicus HOM05D003956 ORTHO05D004850 0.0e+00 1483.8 901 82.9
FAN22G1243 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1481.8 975 77.8
Phvul.003G098200 Phaseolus vulgaris HOM05D003956 ORTHO05D004850 0.0e+00 1481.5 977 78.7
Aa31LG9G1910 Aethionema arabicum HOM05D003956 ORTHO05D004850 0.0e+00 1479.5 893 82.9
Cpa.g.sc16.74 Carica papaya HOM05D003956 ORTHO05D004850 0.0e+00 1478.8 907 82.2
FAN12G0499 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1478.0 985 77.1
FAN12G2270 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1478.0 985 77.1
THA.LOC104820228 Tarenaya hassleriana HOM05D003956 ORTHO05D004850 0.0e+00 1478.0 950 78.8
Thecc.04G272600 Theobroma cacao HOM05D003956 ORTHO05D004850 0.0e+00 1476.5 911 82.8
FAN17G1489 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1476.1 985 77.2
MD13G1177400 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1475.7 873 84.2
FAN07G1911 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1470.3 988 76.9
Lsat_1_v5_gn_5_51481 Lactuca sativa HOM05D003956 ORTHO05D004850 0.0e+00 1470.3 874 83.9
Duzib151G0049 Durio zibethinus HOM05D003956 ORTHO05D004850 0.0e+00 1465.3 1002 76.6
PSO302G0065 Papaver somniferum HOM05D003956 ORTHO05D004850 0.0e+00 1464.1 985 75.3
Lalb_Chr13g0303991 Lupinus albus HOM05D003956 ORTHO05D004850 0.0e+00 1460.7 893 81.7
AL7G39990 Arabidopsis lyrata HOM05D003956 ORTHO05D004850 0.0e+00 1458.0 897 81.6
PSO170G3340 Papaver somniferum HOM05D003956 ORTHO05D004850 0.0e+00 1457.2 985 75.1
DCAR_023283 Daucus carota HOM05D003956 ORTHO05D004850 0.0e+00 1456.8 982 77.3
Nn4g26122 Nelumbo nucifera HOM05D003956 ORTHO05D004850 0.0e+00 1456.8 876 82.8
MELO3C006585.2 Cucumis melo HOM05D003956 ORTHO05D004850 0.0e+00 1456.4 846 86.1
AT4G15530 Arabidopsis thaliana HOM05D003956 ORTHO05D004850 0.0e+00 1453.7 895 81.5
Psat0ss7919g0200 Pisum sativum HOM05D003956 ORTHO05D004850 0.0e+00 1453.0 860 84.3
MSTRG.10031 Avicennia marina HOM05D003956 ORTHO05D004850 0.0e+00 1449.9 876 82.3
SalBow2G1708 Salvia bowleyana HOM05D003956 ORTHO05D004850 0.0e+00 1448.3 876 82.5
CDE08G0632 Ceratophyllum demersum HOM05D003956 ORTHO05D004850 0.0e+00 1448.0 874 82.2
Hma1.2p1_0511F.1_g169230 Hydrangea macrophylla HOM05D003956 ORTHO05D004850 0.0e+00 1447.2 880 83.2
MD16G1179300 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1447.2 857 84.1
SGA_v2.0_scaffold142G35643 Striga asiatica HOM05D003956 ORTHO05D004850 0.0e+00 1446.4 930 79.1
Thhalv10024330m.g Eutrema salsugineum HOM05D003956 ORTHO05D004850 0.0e+00 1444.1 897 80.7
Sp7g13780 Schrenkiella parvula HOM05D003956 ORTHO05D004850 0.0e+00 1442.6 894 80.8
MSTRG.10030 Avicennia marina HOM05D003956 ORTHO05D004850 0.0e+00 1442.2 882 81.2
CARHR222330 Cardamine hirsuta HOM05D003956 ORTHO05D004850 0.0e+00 1440.2 906 79.9
BcaC06g32940 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1439.9 897 80.3
MD16G1179400 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1439.9 857 84.0
QL06p005921 Quercus lobata HOM05D003956 ORTHO05D004850 0.0e+00 1439.9 878 82.0
BcaNung00266 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1439.1 892 80.6
A01p22040 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1437.9 892 80.4
C01p27430 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1437.9 892 80.4
BraA01t02110Z Brassica rapa HOM05D003956 ORTHO05D004850 0.0e+00 1437.9 892 80.4
PGSC0003DMG400032107 Solanum tuberosum HOM05D003956 ORTHO05D004850 0.0e+00 1437.2 844 85.2
ATR0626G228 Amborella trichopoda HOM05D003956 ORTHO05D004850 0.0e+00 1436.8 874 81.5
BraA03t14011Z Brassica rapa HOM05D003956 ORTHO05D004850 0.0e+00 1436.4 897 80.0
C07p47210 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1434.1 897 80.0
BolC7t45243H Brassica oleracea HOM05D003956 ORTHO05D004850 0.0e+00 1433.3 897 79.9
Sc25g0004550 Simmondsia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1433.3 860 83.3
arahy.Tifrunner.gnm1.ann1.EQKV61 Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1429.8 939 79.1
arahy.Tifrunner.gnm1.ann1.YQ8C5N Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1428.3 853 84.5
BolC1t02682H Brassica oleracea HOM05D003956 ORTHO05D004850 0.0e+00 1427.9 899 79.8
Duzib151G0209 Durio zibethinus HOM05D003956 ORTHO05D004850 0.0e+00 1427.5 872 81.7
Thecc.04G272800 Theobroma cacao HOM05D003956 ORTHO05D004850 0.0e+00 1426.8 874 81.7
vmacro08238 Vaccinium macrocarpon HOM05D003956 ORTHO05D004850 0.0e+00 1426.8 1089 70.3
CDE02G0811 Ceratophyllum demersum HOM05D003956 ORTHO05D004850 0.0e+00 1424.8 889 80.2
Os05g0405000 Oryza sativa ssp. japonica HOM05D003956 ORTHO05D004850 0.0e+00 1419.8 949 76.1
BcaC09g50248 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1418.3 874 80.9
A03p49170 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1415.2 883 79.7
Zm00001eb349810 Zea mays HOM05D003956 ORTHO05D004850 0.0e+00 1412.1 915 77.8
ClCG05G005590 Citrullus lanatus HOM05D003956 ORTHO05D004850 0.0e+00 1401.3 965 76.0
arahy.Tifrunner.gnm1.ann1.I3NY02 Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1398.6 902 78.6
Carub.0007s2635 Capsella rubella HOM05D003956 ORTHO05D004850 0.0e+00 1393.6 860 80.7
Ah.11g043140 Amaranthus hybridus HOM05D003956 ORTHO05D004850 0.0e+00 1375.5 962 74.1
EL10Ac1g01820 Beta vulgaris HOM05D003956 ORTHO05D004850 0.0e+00 1375.1 972 73.6
Hund19586 Selenicereus undatus HOM05D003956 ORTHO05D004850 0.0e+00 1374.4 846 79.7
Psat4g028880 Pisum sativum HOM05D003956 ORTHO05D004850 0.0e+00 1370.1 808 83.4
AagrBONN_evm.TU.Sc2ySwM_228.3276 Anthoceros agrestis HOM05D003956 ORTHO05D004850 0.0e+00 1367.1 891 76.4
PGR031G3666 Punica granatum HOM05D003956 ORTHO05D004850 0.0e+00 1351.3 852 78.6
CSS0013368 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 0.0e+00 1350.1 805 84.3
Rhsim02G0016700 Rhododendron simsii HOM05D003956 ORTHO05D004850 0.0e+00 1348.6 884 77.9
Mapoly0009s0124 Marchantia polymorpha HOM05D003956 ORTHO05D004850 0.0e+00 1347.0 889 75.3
Pp3c5_22540 Physcomitrium patens HOM05D003956 ORTHO05D004850 0.0e+00 1346.6 889 75.6
Oeu032695.1 Olea europaea HOM05D003956 ORTHO05D004850 0.0e+00 1340.5 776 86.1
SMO351G0542 Selaginella moellendorffii HOM05D003956 ORTHO05D004850 0.0e+00 1339.3 872 75.6
Actinidia32373 Actinidia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1323.9 883 77.3
Eucgr.B01186 Eucalyptus grandis HOM05D003956 ORTHO05D004850 0.0e+00 1313.5 825 79.4
unitig_26.g8936 Utricularia gibba HOM05D003956 ORTHO05D004850 0.0e+00 1313.5 876 76.8
arahy.Tifrunner.gnm1.ann1.DC6B04 Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1307.7 902 74.5
Gohir.A10G105700 Gossypium hirsutum HOM05D003956 ORTHO05D004850 0.0e+00 1302.3 831 79.8
Hma1.2p1_2025F.1_g311530 Hydrangea macrophylla HOM05D003956 ORTHO05D004850 0.0e+00 1280.8 874 76.5
CSS0018237 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 0.0e+00 1265.8 884 76.0
vmacro15287 Vaccinium macrocarpon HOM05D003956 ORTHO05D004850 0.0e+00 1232.6 878 72.9
Zm00001eb287770 Zea mays HOM05D003956 ORTHO05D004850 0.0e+00 1175.6 732 79.9
BcaC09g50243 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1173.3 780 76.4
Cre17.g734548 Chlamydomonas reinhardtii HOM05D003956 ORTHO05D004850 0.0e+00 1138.6 888 65.7
TPR.G28133 Trifolium pratense HOM05D003956 ORTHO05D004850 0.0e+00 1138.6 876 67.7
MCO12G211 Micromonas commoda HOM05D003956 ORTHO05D004850 0.0e+00 1133.6 856 66.8
unitig_749.g14056 Utricularia gibba HOM05D003956 ORTHO05D004850 4.9e-302 1041.2 635 81.4
Cre10.g424750 Chlamydomonas reinhardtii HOM05D003956 ORTHO05D004850 1.4e-288 996.5 882 58.6
Migut.G00280 Erythranthe guttata HOM05D003956 ORTHO05D004850 4.2e-285 984.9 583 83.7
Medtr4g118350 Medicago truncatula HOM05D003956 ORTHO05D004850 2.5e-277 959.1 566 84.1
MCO01G687 Micromonas commoda HOM05D003956 ORTHO05D004850 6.3e-249 864.8 912 53.1
AUR62034950 Chenopodium quinoa HOM05D003956 ORTHO05D004850 4.9e-225 785.4 550 74.2
AUR62035455 Chenopodium quinoa HOM05D003956 ORTHO05D004850 7.8e-223 778.1 525 76.2
HanXRQChr03g0080571 Helianthus annuus HOM05D003956 ORTHO05D004850 3.3e-197 693.0 410 83.2
AUR62035456 Chenopodium quinoa HOM05D003956 ORTHO05D004850 2.4e-195 686.8 506 71.5
CBR_g50184 Chara braunii HOM05D003956 ORTHO05D004850 1.6e-183 647.5 746 50.1
AUR62034949 Chenopodium quinoa HOM05D003956 ORTHO05D004850 1.9e-173 614.0 452 70.8
SGA_v2.0_scaffold86G26866 Striga asiatica HOM05D003956 ORTHO05D004850 2.1e-159 567.4 449 67.0
BcaC06g33414 Brassica carinata HOM05D003956 ORTHO05D004850 2.7e-143 513.8 340 77.9
SGA_v2.0_scaffold86G26865 Striga asiatica HOM05D003956 ORTHO05D004850 1.7e-129 468.0 370 65.4
Medtr4g118355 Medicago truncatula HOM05D003956 ORTHO05D004850 1.1e-120 438.7 295 76.6
arahy.Tifrunner.gnm1.ann1.9WT78J Arachis hypogaea HOM05D003956 ORTHO05D004850 4.3e-104 383.6 322 65.5
AUR62034328 Chenopodium quinoa HOM05D003956 ORTHO05D004850 1.0e-97 362.5 425 49.6
HanXRQChr16g0518081 Helianthus annuus HOM05D003956 ORTHO05D004850 8.6e-97 359.4 231 77.1
arahy.Tifrunner.gnm1.ann1.HZTZ4X Arachis hypogaea HOM05D003956 ORTHO05D004850 4.3e-88 330.5 276 64.9
arahy.Tifrunner.gnm1.ann1.7LSJ4G Arachis hypogaea HOM05D003956 ORTHO05D004850 1.9e-67 261.9 229 63.8
arahy.Tifrunner.gnm1.ann1.989M5Y Arachis hypogaea HOM05D003956 ORTHO05D004850 1.4e-62 245.7 218 61.0
unitig_749.g14057 Utricularia gibba HOM05D003956 ORTHO05D004850 1.3e-60 239.2 148 81.1
AagrBONN_evm.TU.Sc2ySwM_362.937 Anthoceros agrestis HOM05D003956 ORTHO05D004850 2.3e-49 201.8 119 79.8
arahy.Tifrunner.gnm1.ann1.S9XVUY Arachis hypogaea HOM05D003956 ORTHO05D004850 1.3e-44 186.0 268 44.8
Pp3c6_6540 Physcomitrium patens HOM05D003956 ORTHO05D004850 1.7e-36 159.1 114 67.5
BcaC09g50244 Brassica carinata HOM05D003956 ORTHO05D004850 6.3e-31 140.6 85 78.8
GSVIVG01018502001 Vitis vinifera HOM05D003956 ORTHO05D004850 1.8e-30 139.0 81 85.2
arahy.Tifrunner.gnm1.ann1.LGH8AH Arachis hypogaea HOM05D003956 ORTHO05D004850 3.1e-30 138.3 83 80.7
Lsat_1_v5_gn_2_81921 Lactuca sativa HOM05D005278 ORTHO05D006500 3.1e-30 138.3 90 75.6
QL06p005983 Quercus lobata HOM05D003956 ORTHO05D004850 8.8e-25 120.2 130 53.8
arahy.Tifrunner.gnm1.ann1.G5444S Arachis hypogaea HOM05D003956 ORTHO05D004850 7.0e-22 110.5 97 61.9
Pp3s196_40 Physcomitrium patens HOM05D003956 ORTHO05D044360 8.5e-20 103.6 442 26.7
TPR.G26738 Trifolium pratense HOM05D003956 ORTHO05D000576 3.6e-18 98.2 56 78.6
SGA_v2.0_scaffold86G26869 Striga asiatica HOM05D000924 ORTHO05D001209 1.1e-11 76.6 56 67.9
MBI15_g32557_MAGBIO Magnolia biondii HOM05D001670 ORTHO05D011598 1.5e-11 76.3 58 69.0
arahy.Tifrunner.gnm1.ann1.V4Y3U4 Arachis hypogaea HOM05D003956 ORTHO05D004850 1.9e-11 75.9 49 75.5
arahy.Tifrunner.gnm1.ann1.57CL3B Arachis hypogaea HOM05D003956 ORTHO05D004850 3.3e-11 75.1 46 78.3
Nn8g40271 Nelumbo nucifera HOM05D001541 ORTHO05D001465 2.3e-09 68.9 140 35.7
Pp3c5_22980 Physcomitrium patens HOM05D003956 ORTHO05D004850 8.9e-09 67.0 43 72.1
HanXRQChr09g0261911 Helianthus annuus HOM05D000495 ORTHO05D000357 7.5e-08 63.9 43 69.8
arahy.Tifrunner.gnm1.ann1.GGZS5I Arachis hypogaea HOM05D003956 ORTHO05D004850 1.7e-07 62.8 52 59.6
TPR.G35464 Trifolium pratense HOM05D003956 ORTHO05D004850 4.9e-07 61.2 56 51.8


User provided reference genes

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