Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3C737G8 Lonicera japonica HOM05D004085 ORTHO05D005189 1.5e-103 379.4 181 100.0
Lj3A1027G87 Lonicera japonica HOM05D004085 ORTHO05D005189 8.9e-35 151.0 80 86.2
Dinv34021 Davidia involucrata HOM05D004085 ORTHO05D005189 6.6e-30 134.8 75 80.0
Manes.05G115200 Manihot esculenta HOM05D004085 ORTHO05D005189 6.6e-30 134.8 75 76.0
Haze_11859 Corylus avellana HOM05D004085 ORTHO05D005189 8.6e-30 134.4 87 66.7
DCAR_007209 Daucus carota HOM05D004085 ORTHO05D005189 8.6e-30 134.4 75 77.3
Sopen04g001280 Solanum pennellii HOM05D004085 ORTHO05D005189 8.6e-30 134.4 75 76.0
PGSC0003DMG400001937 Solanum tuberosum HOM05D004085 ORTHO05D005189 8.6e-30 134.4 75 76.0
Peaxi162Scf00873g00113 Petunia axillaris HOM05D004085 ORTHO05D005189 1.1e-29 134.0 75 76.0
MSTRG.7728 Avicennia marina HOM05D004085 ORTHO05D005189 1.5e-29 133.7 75 76.0
Cfa008850 Carpinus fangiana HOM05D004085 ORTHO05D005189 1.9e-29 133.3 75 74.7
Cc11_g11560 Coffea canephora HOM05D004085 ORTHO05D005189 2.5e-29 132.9 75 77.3
Lsat_1_v5_gn_8_36601 Lactuca sativa HOM05D004085 ORTHO05D005189 2.5e-29 132.9 75 76.0
Nn3g17533 Nelumbo nucifera HOM05D004085 ORTHO05D005189 2.5e-29 132.9 75 80.0
ClCG08G010600 Citrullus lanatus HOM05D004085 ORTHO05D005189 4.3e-29 132.1 75 74.7
MELO3C011402.2 Cucumis melo HOM05D004085 ORTHO05D005189 5.6e-29 131.7 75 74.7
CsaV3_6G033900 Cucumis sativus L. HOM05D004085 ORTHO05D005189 5.6e-29 131.7 75 74.7
ECA233G2807 Erigeron canadensis HOM05D004085 ORTHO05D005189 5.6e-29 131.7 75 74.7
Nitab4.5_0000591g0050 Nicotiana tabacum HOM05D004085 ORTHO05D005189 7.3e-29 131.3 75 73.3
Nitab4.5_0001071g0010 Nicotiana tabacum HOM05D004085 ORTHO05D005189 7.3e-29 131.3 75 73.3
SGA_v2.0_scaffold36G14490 Striga asiatica HOM05D004085 ORTHO05D005189 1.2e-28 130.6 75 73.3
TWI75G0426 Tripterygium wilfordii HOM05D004085 ORTHO05D005189 1.2e-28 130.6 75 76.0
Lj4g0023791 Lotus japonicus HOM05D004085 ORTHO05D005189 2.1e-28 129.8 75 74.7
MSTRG.779 Avicennia marina HOM05D004085 ORTHO05D005189 4.7e-28 128.6 75 72.0
CANSAT64G3016 Cannabis sativa HOM05D004085 ORTHO05D005189 4.7e-28 128.6 75 73.3
Phvul.003G280600 Phaseolus vulgaris HOM05D004085 ORTHO05D005189 4.7e-28 128.6 75 72.0
Duzib251G0046 Durio zibethinus HOM05D004085 ORTHO05D005189 6.2e-28 128.3 75 70.7
HanXRQChr12g0365061 Helianthus annuus HOM05D004085 ORTHO05D005189 6.2e-28 128.3 75 72.0
Sc14g0007770 Simmondsia chinensis HOM05D004085 ORTHO05D005189 6.2e-28 128.3 79 68.4
Gohir.A03G106500 Gossypium hirsutum HOM05D004085 ORTHO05D005189 8.0e-28 127.9 75 69.3
Gohir.D02G131700 Gossypium hirsutum HOM05D004085 ORTHO05D005189 8.0e-28 127.9 75 70.7
Gorai.005G147600 Gossypium raimondii HOM05D004085 ORTHO05D005189 8.0e-28 127.9 75 70.7
Hma1.2p1_0428F.1_g150850 Hydrangea macrophylla HOM05D004085 ORTHO05D005189 8.0e-28 127.9 75 73.3
Rhsim09G0122200 Rhododendron simsii HOM05D004085 ORTHO05D005189 8.0e-28 127.9 75 74.7
Atru.chr11.1559 Acer truncatum HOM05D004085 ORTHO05D005189 1.1e-27 127.5 75 73.3
arahy.Tifrunner.gnm1.ann1.34XV9Z Arachis hypogaea HOM05D004085 ORTHO05D005189 1.1e-27 127.5 75 70.7
arahy.Tifrunner.gnm1.ann1.A9XC2E Arachis hypogaea HOM05D004085 ORTHO05D005189 1.1e-27 127.5 75 70.7
COL.COLO4_27802 Corchorus olitorius HOM05D004085 ORTHO05D005189 1.1e-27 127.5 69 76.8
VMungo0251G3520 Vigna mungo HOM05D004085 ORTHO05D005189 1.1e-27 127.5 75 70.7
Migut.D01616 Erythranthe guttata HOM05D004085 ORTHO05D005189 1.4e-27 127.1 75 73.3
Nn4g23533 Nelumbo nucifera HOM05D004085 ORTHO05D005189 1.8e-27 126.7 75 74.7
Psat4g118760 Pisum sativum HOM05D004085 ORTHO05D005189 1.8e-27 126.7 75 69.3
Hund25155 Selenicereus undatus HOM05D004085 ORTHO05D005189 1.8e-27 126.7 75 72.0
Thecc.02G322800 Theobroma cacao HOM05D004085 ORTHO05D005189 1.8e-27 126.7 75 70.7
Actinidia07768 Actinidia chinensis HOM05D004085 ORTHO05D005189 2.3e-27 126.3 69 79.7
Medtr8g066120 Medicago truncatula HOM05D004085 ORTHO05D005189 2.3e-27 126.3 75 69.3
Psat4g122760 Pisum sativum HOM05D004085 ORTHO05D005189 2.3e-27 126.3 75 69.3
Glyma.05G183800 Glycine max HOM05D004085 ORTHO05D005189 3.1e-27 125.9 75 69.3
PGR102G0161 Punica granatum HOM05D004085 ORTHO05D005189 3.1e-27 125.9 75 72.0
Migut.L01162 Erythranthe guttata HOM05D004085 ORTHO05D005189 4.0e-27 125.6 75 70.7
Lalb_Chr20g0117031 Lupinus albus HOM05D004085 ORTHO05D005189 4.0e-27 125.6 75 69.3
TPR.G40588 Trifolium pratense HOM05D004085 ORTHO05D005189 4.0e-27 125.6 68 76.5
CiPaw.05G122000 Carya illinoinensis HOM05D004085 ORTHO05D005189 5.2e-27 125.2 75 69.3
Sed0007813 Sechium edule HOM05D004085 ORTHO05D005189 6.8e-27 124.8 75 70.7
TAR629G1999 Trochodendron aralioides HOM05D004085 ORTHO05D005189 6.8e-27 124.8 75 72.0
Hma1.2p1_0595F.1_g186285 Hydrangea macrophylla HOM05D004085 ORTHO05D005189 8.9e-27 124.4 75 72.0
SalBow2G2246 Salvia bowleyana HOM05D004085 ORTHO05D005189 8.9e-27 124.4 75 69.3
Ah.03g138610 Amaranthus hybridus HOM05D004085 ORTHO05D005189 1.2e-26 124.0 79 65.8
AUR62003058 Chenopodium quinoa HOM05D004085 ORTHO05D005189 1.2e-26 124.0 75 69.3
GSVIVG01008152001 Vitis vinifera HOM05D004085 ORTHO05D005189 1.5e-26 123.6 75 73.3
MD16G1055900 Malus domestica HOM05D004085 ORTHO05D005189 2.0e-26 123.2 75 70.7
THA.LOC104805212 Tarenaya hassleriana HOM05D004085 ORTHO05D005189 2.0e-26 123.2 75 66.7
Ca_22870_v3 Cicer arietinum L. HOM05D004085 ORTHO05D005189 2.6e-26 122.9 75 68.0
Oeu045347.1 Olea europaea HOM05D004085 ORTHO05D005189 2.6e-26 122.9 75 72.0
vmacro10475 Vaccinium macrocarpon HOM05D004085 ORTHO05D005189 2.6e-26 122.9 75 70.7
Eucgr.J01102 Eucalyptus grandis HOM05D004085 ORTHO05D005189 3.4e-26 122.5 75 69.3
Cpa.g.sc1.168 Carica papaya HOM05D004085 ORTHO05D005189 4.4e-26 122.1 75 69.3
AUR62007873 Chenopodium quinoa HOM05D004085 ORTHO05D005189 5.8e-26 121.7 75 69.3
Duzib248G1362 Durio zibethinus HOM05D004085 ORTHO05D005189 5.8e-26 121.7 75 69.3
CSS0030921 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 7.5e-26 121.3 73 74.0
Ciclev10032152m.g Citrus clementina HOM05D004085 ORTHO05D005189 7.5e-26 121.3 75 69.3
MBI14_g08107_MAGBIO Magnolia biondii HOM05D004085 ORTHO05D005189 7.5e-26 121.3 75 69.3
HanXRQChr05g0157451 Helianthus annuus HOM05D004085 ORTHO05D005189 9.8e-26 120.9 75 72.0
Prupe.1G293400 Prunus persica HOM05D004085 ORTHO05D005189 9.8e-26 120.9 75 66.7
Aa31LG2G6920 Aethionema arabicum HOM05D004085 ORTHO05D005189 2.2e-25 119.8 75 66.7
FvH4_4g29300 Fragaria vesca HOM05D004085 ORTHO05D005189 2.2e-25 119.8 75 66.7
FAN07G2517 Fragaria x ananassa HOM05D004085 ORTHO05D005189 2.2e-25 119.8 75 66.7
FAN12G2772 Fragaria x ananassa HOM05D004085 ORTHO05D005189 2.2e-25 119.8 75 66.7
FAN22G1834 Fragaria x ananassa HOM05D004085 ORTHO05D005189 2.2e-25 119.8 75 66.7
Lsat_1_v5_gn_5_23401 Lactuca sativa HOM05D004085 ORTHO05D005189 2.2e-25 119.8 75 72.0
Lalb_Chr15g0084991 Lupinus albus HOM05D004085 ORTHO05D005189 2.2e-25 119.8 75 65.3
CSS0028863 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 3.7e-25 119.0 75 69.3
RcHm_v2.0_Chr4g0437351 Rosa chinensis HOM05D004085 ORTHO05D005189 3.7e-25 119.0 75 66.7
AL3G42500 Arabidopsis lyrata HOM05D004085 ORTHO05D005189 4.9e-25 118.6 75 65.3
AL5G13590 Arabidopsis lyrata HOM05D004085 ORTHO05D005189 4.9e-25 118.6 75 65.3
Carub.0005s0294 Capsella rubella HOM05D004085 ORTHO05D005189 4.9e-25 118.6 75 65.3
ECA246G2852 Erigeron canadensis HOM05D004085 ORTHO05D005189 4.9e-25 118.6 75 69.3
MD13G1056600 Malus domestica HOM05D004085 ORTHO05D005189 4.9e-25 118.6 75 68.0
Aqoxy3G03746 Aquilegia oxysepala HOM05D004085 ORTHO05D005189 8.3e-25 117.9 75 66.7
BcaC06g31165 Brassica carinata HOM05D004085 ORTHO05D005189 1.1e-24 117.5 75 66.7
CSS0016924 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 1.1e-24 117.5 73 72.6
Os08g0339200 Oryza sativa ssp. japonica HOM05D004085 ORTHO05D005189 1.4e-24 117.1 76 67.1
AT2G03800 Arabidopsis thaliana HOM05D004085 ORTHO05D005189 1.9e-24 116.7 75 65.3
PSO063G3410 Papaver somniferum HOM05D004085 ORTHO05D005189 1.9e-24 116.7 75 66.7
ATR0691G189 Amborella trichopoda HOM05D004085 ORTHO05D005189 2.4e-24 116.3 75 66.7
A06p42850 Brassica napus HOM05D004085 ORTHO05D005189 3.2e-24 115.9 75 65.3
CSS0006421 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 3.2e-24 115.9 75 69.3
DCAR_011575 Daucus carota HOM05D004085 ORTHO05D005189 3.2e-24 115.9 75 68.0
Lj5A137T62 Lonicera japonica HOM05D004085 ORTHO05D005189 4.1e-24 115.5 75 69.3
PSO409G0049 Papaver somniferum HOM05D004085 ORTHO05D005189 4.1e-24 115.5 75 65.3
Dinv07974 Davidia involucrata HOM05D004085 ORTHO05D005189 5.4e-24 115.2 80 66.2
Nitab4.5_0002449g0030 Nicotiana tabacum HOM05D004085 ORTHO05D005189 5.4e-24 115.2 75 65.3
Nitab4.5_0002863g0020 Nicotiana tabacum HOM05D004085 ORTHO05D005189 5.4e-24 115.2 75 65.3
PGR044G1995 Punica granatum HOM05D004085 ORTHO05D005189 5.4e-24 115.2 75 66.7
BraA06t27197Z Brassica rapa HOM05D004085 ORTHO05D005189 7.0e-24 114.8 75 65.3
Eucgr.K02549 Eucalyptus grandis HOM05D004085 ORTHO05D005189 7.0e-24 114.8 99 52.5
HPP92_003714 Vanilla planifolia HOM05D004085 ORTHO05D005189 7.0e-24 114.8 75 62.7
BcaC06g31143 Brassica carinata HOM05D004085 ORTHO05D005189 1.2e-23 114.0 75 64.0
C07p34240 Brassica napus HOM05D004085 ORTHO05D005189 1.2e-23 114.0 75 64.0
BolC7t43952H Brassica oleracea HOM05D004085 ORTHO05D005189 1.2e-23 114.0 75 64.0
BraA02t08382Z Brassica rapa HOM05D004085 ORTHO05D005189 1.2e-23 114.0 75 64.0
SHI14335 Sapria himalayana HOM05D004085 ORTHO05D005189 2.1e-23 113.2 81 63.0
CAN.G587.59 Capsicum annuum HOM05D004085 ORTHO05D005189 2.7e-23 112.8 75 66.7
Cpa.g.sc3.236 Carica papaya HOM05D004085 ORTHO05D005189 2.7e-23 112.8 75 66.7
Solyc06g069390.4 Solanum lycopersicum HOM05D004085 ORTHO05D005189 2.7e-23 112.8 75 66.7
Sopen06g026660 Solanum pennellii HOM05D004085 ORTHO05D005189 2.7e-23 112.8 75 66.7
PGSC0003DMG401004079 Solanum tuberosum HOM05D004085 ORTHO05D005189 2.7e-23 112.8 75 66.7
PGSC0003DMG402004079 Solanum tuberosum HOM05D004085 ORTHO05D005189 2.7e-23 112.8 75 66.7
Gorai.007G040300 Gossypium raimondii HOM05D004085 ORTHO05D005189 3.5e-23 112.5 75 66.7
Os09g0248000 Oryza sativa ssp. japonica HOM05D004085 ORTHO05D005189 3.5e-23 112.5 75 62.7
Sp2g14620 Schrenkiella parvula HOM05D004085 ORTHO05D005189 3.5e-23 112.5 75 61.3
BcaC03g17242 Brassica carinata HOM05D004085 ORTHO05D005189 4.6e-23 112.1 75 62.7
A02p33630 Brassica napus HOM05D004085 ORTHO05D005189 4.6e-23 112.1 75 62.7
C02p51780 Brassica napus HOM05D004085 ORTHO05D005189 4.6e-23 112.1 75 62.7
BolC2t11263H Brassica oleracea HOM05D004085 ORTHO05D005189 4.6e-23 112.1 75 62.7
Gohir.D11G037500 Gossypium hirsutum HOM05D004085 ORTHO05D005189 6.0e-23 111.7 75 66.7
Thhalv10004640m.g Eutrema salsugineum HOM05D004085 ORTHO05D005189 7.8e-23 111.3 75 61.3
Peaxi162Scf00013g00834 Petunia axillaris HOM05D004085 ORTHO05D005189 1.0e-22 110.9 75 64.0
CARHR146210 Cardamine hirsuta HOM05D004085 ORTHO05D005189 1.3e-22 110.5 75 61.3
COL.COLO4_27493 Corchorus olitorius HOM05D004085 ORTHO05D005189 1.7e-22 110.2 75 65.3
Sabra15G0078600 Salix brachista HOM05D004085 ORTHO05D005189 3.0e-22 109.4 75 65.3
unitig_22.g6891 Utricularia gibba HOM05D004085 ORTHO05D005189 3.0e-22 109.4 57 80.7
Gohir.A11G034100 Gossypium hirsutum HOM05D004085 ORTHO05D005189 3.9e-22 109.0 75 65.3
Mapoly0007s0171 Marchantia polymorpha HOM05D004085 ORTHO05D005189 5.1e-22 108.6 75 62.7
Potri.015G048700 Populus trichocarpa HOM05D004085 ORTHO05D005189 5.1e-22 108.6 75 64.0
Duzib068G1264 Durio zibethinus HOM05D004085 ORTHO05D005189 1.5e-21 107.1 67 68.7
Manes.06G081100 Manihot esculenta HOM05D004085 ORTHO05D005189 1.5e-21 107.1 75 65.3
BcaB07g30279 Brassica carinata HOM05D004085 ORTHO05D005189 3.3e-21 105.9 75 60.0
Zm00001eb276680 Zea mays HOM05D004085 ORTHO05D005189 3.3e-21 105.9 68 66.2
TPR.G27985 Trifolium pratense HOM05D004085 ORTHO05D005189 5.6e-21 105.1 62 69.4
C07p34190 Brassica napus HOM05D004085 ORTHO05D005189 4.7e-20 102.1 79 57.0
MD16G1055500 Malus domestica HOM05D004085 ORTHO05D005189 4.0e-19 99.0 67 64.2
CDE01G0369 Ceratophyllum demersum HOM05D004085 ORTHO05D005189 5.2e-19 98.6 75 57.3
BolC7t43946H Brassica oleracea HOM05D004085 ORTHO05D005189 1.2e-18 97.4 58 70.7
AagrBONN_evm.TU.Sc2ySwM_344.2928 Anthoceros agrestis HOM05D004085 ORTHO05D005189 7.5e-18 94.7 75 53.3
EL10Ac6g14673 Beta vulgaris HOM05D004085 ORTHO05D005189 1.7e-17 93.6 57 68.4
SMO146G0350 Selaginella moellendorffii HOM05D004085 ORTHO05D005189 1.7e-17 93.6 75 52.0
Oeu045348.1 Olea europaea HOM05D004085 ORTHO05D005189 2.9e-17 92.8 59 69.5
Peaxi162Scf00098g00096 Petunia axillaris HOM05D004085 ORTHO05D005189 2.9e-17 92.8 56 73.2
Pp3c4_31680 Physcomitrium patens HOM05D004085 ORTHO05D005189 8.3e-17 91.3 75 52.0
Pp3c3_10070 Physcomitrium patens HOM05D004085 ORTHO05D005189 1.4e-16 90.5 75 56.0
CSS0002590 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 1.9e-16 90.1 49 79.6
CBR_g34346 Chara braunii HOM05D004085 ORTHO05D005189 4.3e-13 79.0 69 46.4
MBI10_g36395_MAGBIO Magnolia biondii HOM05D004085 ORTHO05D005189 5.6e-13 78.6 75 48.0
HPP92_003722 Vanilla planifolia HOM05D004085 ORTHO05D005189 2.7e-07 59.7 57 50.9
SEGI_05680 Sequoiadendron giganteum HOM05D004085 ORTHO05D005189 1.3e-06 57.4 55 43.6


User provided reference genes

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