Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3C736T6 Lonicera japonica HOM05D004259 ORTHO05D005014 5.6e-203 710.7 351 100.0
CSS0003524 Camellia sinensis var. sinensis HOM05D004259 ORTHO05D005014 2.5e-166 589.0 364 79.9
Atru.chr8.1940 Acer truncatum HOM05D004259 ORTHO05D005014 2.4e-161 572.4 364 77.2
Lsat_1_v5_gn_1_20280 Lactuca sativa HOM05D004259 ORTHO05D005014 5.3e-161 571.2 361 76.5
Cfa018528 Carpinus fangiana HOM05D004259 ORTHO05D005014 4.5e-160 568.2 360 78.6
Duzib128G0657 Durio zibethinus HOM05D004259 ORTHO05D005014 5.0e-159 564.7 361 75.6
Ciclev10012027m.g Citrus clementina HOM05D004259 ORTHO05D005014 4.2e-158 561.6 364 76.1
CiPaw.15G061500 Carya illinoinensis HOM05D004259 ORTHO05D005014 1.8e-156 556.2 363 75.8
Manes.08G078200 Manihot esculenta HOM05D004259 ORTHO05D005014 5.2e-156 554.7 364 75.0
Oeu018211.1 Olea europaea HOM05D004259 ORTHO05D005014 8.8e-156 553.9 376 73.4
HanXRQChr04g0103531 Helianthus annuus HOM05D004259 ORTHO05D005014 1.2e-155 553.5 364 73.6
Potri.003G094800 Populus trichocarpa HOM05D004259 ORTHO05D005014 4.4e-155 551.6 364 75.3
Cpa.g.sc973.4 Carica papaya HOM05D004259 ORTHO05D005014 7.5e-155 550.8 364 74.2
Peaxi162Scf00162g00029 Petunia axillaris HOM05D004259 ORTHO05D005014 7.5e-155 550.8 372 72.8
Migut.N02703 Erythranthe guttata HOM05D004259 ORTHO05D005014 3.7e-154 548.5 364 73.6
Sed0023883 Sechium edule HOM05D004259 ORTHO05D005014 4.8e-154 548.1 361 73.4
Peaxi162Scf00929g00211 Petunia axillaris HOM05D004259 ORTHO05D005014 1.1e-153 547.0 372 72.8
QL02p005360 Quercus lobata HOM05D004259 ORTHO05D005014 2.4e-153 545.8 424 67.2
TAR376G0692 Trochodendron aralioides HOM05D004259 ORTHO05D005014 3.1e-153 545.4 355 76.1
MSTRG.24327 Avicennia marina HOM05D004259 ORTHO05D005014 5.3e-153 544.7 364 73.6
CsaV3_2G028020 Cucumis sativus L. HOM05D004259 ORTHO05D005014 1.2e-152 543.5 360 72.8
MELO3C010882.2 Cucumis melo HOM05D004259 ORTHO05D005014 2.0e-152 542.7 360 72.5
MD08G1103300 Malus domestica HOM05D004259 ORTHO05D005014 2.0e-152 542.7 364 73.9
Thecc.05G042500 Theobroma cacao HOM05D004259 ORTHO05D005014 7.7e-152 540.8 361 73.1
AUR62039303 Chenopodium quinoa HOM05D004259 ORTHO05D005014 1.0e-151 540.4 363 71.9
CAN.G65.190 Capsicum annuum HOM05D004259 ORTHO05D005014 1.3e-151 540.0 369 72.4
Gohir.D11G345100 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.3e-151 540.0 362 72.1
Gorai.007G375500 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.7e-151 539.7 362 72.1
Gohir.A11G326200 Gossypium hirsutum HOM05D004259 ORTHO05D005014 6.5e-151 537.7 362 71.5
CANSAT01G2810 Cannabis sativa HOM05D004259 ORTHO05D005014 1.1e-150 537.0 363 72.2
AUR62022427 Chenopodium quinoa HOM05D004259 ORTHO05D005014 1.1e-150 537.0 363 71.6
ClCG08G015740 Citrullus lanatus HOM05D004259 ORTHO05D005014 1.1e-150 537.0 374 71.1
Sopen06g029870 Solanum pennellii HOM05D004259 ORTHO05D005014 3.2e-150 535.4 362 73.2
PSO675G0522 Papaver somniferum HOM05D004259 ORTHO05D005014 5.5e-150 534.6 363 73.6
Solyc06g073510.3 Solanum lycopersicum HOM05D004259 ORTHO05D005014 9.4e-150 533.9 362 72.7
PGSC0003DMG400027003 Solanum tuberosum HOM05D004259 ORTHO05D005014 1.2e-149 533.5 362 72.7
EL10Ac3g06655 Beta vulgaris HOM05D004259 ORTHO05D005014 3.6e-149 531.9 363 70.2
MBI02_g17334_MAGBIO Magnolia biondii HOM05D004259 ORTHO05D005014 3.6e-149 531.9 390 67.9
THA.LOC104806568 Tarenaya hassleriana HOM05D004259 ORTHO05D005014 6.1e-149 531.2 361 71.2
RcHm_v2.0_Chr6g0307691 Rosa chinensis HOM05D004259 ORTHO05D005014 1.0e-148 530.4 364 71.2
Haze_17552 Corylus avellana HOM05D004259 ORTHO05D005014 1.4e-148 530.0 355 75.8
Dinv39327 Davidia involucrata HOM05D004259 ORTHO05D005014 8.8e-148 527.3 322 82.0
FAN20G1942 Fragaria x ananassa HOM05D004259 ORTHO05D005014 1.5e-147 526.6 364 70.9
FvH4_2g34610 Fragaria vesca HOM05D004259 ORTHO05D005014 2.0e-147 526.2 364 70.3
PSO339G6255 Papaver somniferum HOM05D004259 ORTHO05D005014 2.0e-147 526.2 363 72.7
Aqoxy7G01016 Aquilegia oxysepala HOM05D004259 ORTHO05D005014 3.4e-147 525.4 359 73.0
SalBow2G1152 Salvia bowleyana HOM05D004259 ORTHO05D005014 3.4e-147 525.4 387 68.2
PGR031G2227 Punica granatum HOM05D004259 ORTHO05D005014 1.3e-146 523.5 363 70.8
FAN15G2861 Fragaria x ananassa HOM05D001625 ORTHO05D005014 1.7e-146 523.1 362 70.4
SalBow2G2463 Salvia bowleyana HOM05D004259 ORTHO05D005014 1.7e-146 523.1 387 68.0
Nitab4.5_0000111g0020 Nicotiana tabacum HOM05D004259 ORTHO05D005014 2.2e-146 522.7 381 69.6
Nitab4.5_0002664g0020 Nicotiana tabacum HOM05D004259 ORTHO05D005014 2.8e-146 522.3 396 67.4
Glyma.14G082100 Glycine max HOM05D004259 ORTHO05D005014 4.8e-146 521.5 358 71.8
SalBow2G2012 Salvia bowleyana HOM05D004259 ORTHO05D005014 8.3e-146 520.8 387 67.7
Lalb_Chr19g0129351 Lupinus albus HOM05D004259 ORTHO05D005014 1.8e-145 519.6 362 70.7
Phvul.001G021100 Phaseolus vulgaris HOM05D004259 ORTHO05D005014 4.1e-145 518.5 365 70.7
THA.LOC104809222 Tarenaya hassleriana HOM05D004259 ORTHO05D005014 5.4e-145 518.1 365 69.6
Nn1g05830 Nelumbo nucifera HOM05D004259 ORTHO05D005014 7.0e-145 517.7 361 70.6
PSO541G1765 Papaver somniferum HOM05D004259 ORTHO05D005014 9.1e-145 517.3 363 70.8
CSS0037728 Camellia sinensis var. sinensis HOM05D004259 ORTHO05D005014 1.2e-144 516.9 351 73.2
Ca_01811_v3 Cicer arietinum L. HOM05D004259 ORTHO05D005014 1.2e-144 516.9 350 72.6
Ca_29610_v3 Cicer arietinum L. HOM05D004259 ORTHO05D005014 1.2e-144 516.9 350 72.6
Lj5g0003666 Lotus japonicus HOM05D004259 ORTHO05D005014 7.7e-144 514.2 361 69.5
Sabra03G0064000 Salix brachista HOM05D004259 ORTHO05D005014 1.0e-143 513.8 347 73.8
Eucgr.F00239 Eucalyptus grandis HOM05D004259 ORTHO05D005014 3.8e-143 511.9 355 70.1
VMungo0647G0522 Vigna mungo HOM05D004259 ORTHO05D005014 3.8e-143 511.9 363 70.2
Sabra11G0061200 Salix brachista HOM05D004259 ORTHO05D005014 6.6e-143 511.1 349 73.1
Rhsim10G0028600 Rhododendron simsii HOM05D004259 ORTHO05D005014 1.9e-142 509.6 354 72.6
TPR.G17553 Trifolium pratense HOM05D004259 ORTHO05D005014 4.2e-142 508.4 346 72.0
C04p10400 Brassica napus HOM05D004259 ORTHO05D005014 5.5e-142 508.1 362 68.0
Nitab4.5_0002045g0130 Nicotiana tabacum HOM05D004259 ORTHO05D005014 7.2e-142 507.7 363 70.2
SGA_v2.0_scaffold204G41641 Striga asiatica HOM05D004259 ORTHO05D005014 7.2e-142 507.7 365 68.5
SalBow3G4106 Salvia bowleyana HOM05D004259 ORTHO05D005014 9.5e-142 507.3 352 71.0
A05p08400 Brassica napus HOM05D004259 ORTHO05D005014 4.7e-141 505.0 362 66.9
BolC4t22638H Brassica oleracea HOM05D004259 ORTHO05D005014 6.1e-141 504.6 362 67.4
Carub.0004s1948 Capsella rubella HOM05D004259 ORTHO05D005014 6.1e-141 504.6 362 67.1
BraA05t19805Z Brassica rapa HOM05D004259 ORTHO05D005014 8.0e-141 504.2 362 66.9
Peaxi162Scf00003g02311 Petunia axillaris HOM05D004259 ORTHO05D005014 8.0e-141 504.2 397 66.0
unitig_26.g10027 Utricularia gibba HOM05D004259 ORTHO05D005014 1.4e-140 503.4 362 68.8
BcaC02g11869 Brassica carinata HOM05D004259 ORTHO05D005014 1.8e-140 503.1 361 67.3
CARHR132030 Cardamine hirsuta HOM05D004259 ORTHO05D005014 4.0e-140 501.9 360 67.5
BcaB02g09273 Brassica carinata HOM05D004259 ORTHO05D005014 6.8e-140 501.1 362 66.3
Thhalv10016846m.g Eutrema salsugineum HOM05D004259 ORTHO05D005014 1.2e-139 500.4 362 66.3
Hma1.2p1_0718F.1_g208420 Hydrangea macrophylla HOM05D004259 ORTHO05D005014 1.2e-139 500.4 298 83.6
TWI53G0519 Tripterygium wilfordii HOM05D004259 ORTHO05D005014 1.2e-139 500.4 353 69.7
Sp4g19910 Schrenkiella parvula HOM05D004259 ORTHO05D005014 1.5e-139 500.0 362 66.9
Psat6g012600 Pisum sativum HOM05D004259 ORTHO05D005014 2.0e-139 499.6 365 69.3
Medtr1g019770 Medicago truncatula HOM05D004259 ORTHO05D005014 2.6e-139 499.2 364 68.1
ATR0100G023 Amborella trichopoda HOM05D004259 ORTHO05D005014 2.8e-138 495.7 359 67.1
GSVIVG01009522001 Vitis vinifera HOM05D004259 ORTHO05D005014 6.3e-138 494.6 300 80.0
Sc07g0003460 Simmondsia chinensis HOM05D004259 ORTHO05D005014 8.3e-138 494.2 316 75.3
AL4G34050 Arabidopsis lyrata HOM05D004259 ORTHO05D005014 1.8e-137 493.0 362 65.7
CDE10G1325 Ceratophyllum demersum HOM05D004259 ORTHO05D005014 1.2e-136 490.3 355 68.2
ECA247G2793 Erigeron canadensis HOM05D004259 ORTHO05D005014 2.3e-135 486.1 319 73.7
Haze_17543 Corylus avellana HOM05D004259 ORTHO05D005014 2.9e-135 485.7 296 80.4
FAN27G2417 Fragaria x ananassa HOM05D004259 ORTHO05D005014 4.3e-134 481.9 364 66.5
arahy.Tifrunner.gnm1.ann1.1PWX74 Arachis hypogaea HOM05D004259 ORTHO05D005014 5.6e-134 481.5 352 69.6
arahy.Tifrunner.gnm1.ann1.63NC9C Arachis hypogaea HOM05D004259 ORTHO05D005014 5.6e-134 481.5 352 69.6
AT2G37560 Arabidopsis thaliana HOM05D004259 ORTHO05D005014 7.3e-134 481.1 360 65.0
Os03g0184700 Oryza sativa ssp. japonica HOM05D004259 ORTHO05D005014 4.0e-132 475.3 354 65.0
Cc10_g04310 Coffea canephora HOM05D004259 ORTHO05D005014 2.2e-130 469.5 355 66.2
Prupe.1G438300 Prunus persica HOM05D004259 ORTHO05D005014 2.1e-125 453.0 298 73.8
Ah.05g168820 Amaranthus hybridus HOM05D001625 ORTHO05D005014 1.1e-124 450.7 344 63.7
Rhsim07G0229700 Rhododendron simsii HOM05D004259 ORTHO05D005014 1.5e-123 446.8 328 69.2
Nitab4.5_0004918g0050 Nicotiana tabacum HOM05D004259 ORTHO05D005014 4.4e-123 445.3 354 65.0
Zm00001eb248940 Zea mays HOM05D004259 ORTHO05D005014 3.7e-122 442.2 358 61.7
MD15G1084600 Malus domestica HOM05D004259 ORTHO05D005014 2.4e-121 439.5 374 62.0
SalBow2G2610 Salvia bowleyana HOM05D004259 ORTHO05D005014 1.6e-120 436.8 387 60.5
Glyma.17G243200 Glycine max HOM05D004259 ORTHO05D005014 3.0e-119 432.6 290 72.8
SalBow2G0695 Salvia bowleyana HOM05D004259 ORTHO05D005014 3.3e-118 429.1 285 73.3
vmacro04457 Vaccinium macrocarpon HOM05D004259 ORTHO05D005014 1.9e-113 413.3 354 62.4
Actinidia29866 Actinidia chinensis HOM05D004259 ORTHO05D005014 6.2e-109 398.3 361 59.8
Rhsim10G0028100 Rhododendron simsii HOM05D004259 ORTHO05D005014 5.8e-107 391.7 354 60.5
AagrBONN_evm.TU.Sc2ySwM_344.5209 Anthoceros agrestis HOM05D004259 ORTHO05D005014 9.3e-97 357.8 359 51.3
Pp3c18_14740 Physcomitrium patens HOM05D004259 ORTHO05D005014 2.1e-96 356.7 347 51.3
Mapoly0106s0035 Marchantia polymorpha HOM05D004259 ORTHO05D005014 5.6e-94 348.6 314 55.1
SEGI_21568 Sequoiadendron giganteum HOM05D004259 ORTHO05D005014 5.6e-94 348.6 287 58.9
COL.COLO4_14836 Corchorus olitorius HOM05D004259 ORTHO05D005014 7.3e-94 348.2 359 52.6
SMO147G0302 Selaginella moellendorffii HOM05D004259 ORTHO05D005014 3.6e-93 345.9 336 51.5
TWI53G0792 Tripterygium wilfordii HOM05D004259 ORTHO05D005014 1.8e-92 343.6 269 65.1
SHI12655 Sapria himalayana HOM05D004259 ORTHO05D005014 4.5e-91 339.0 366 51.4
RcHm_v2.0_Chr6g0307531 Rosa chinensis HOM05D004259 ORTHO05D005014 2.9e-90 336.3 367 52.0
CBR_g6665 Chara braunii HOM05D004259 ORTHO05D005014 3.2e-89 332.8 336 49.7
HPP92_027219 Vanilla planifolia HOM05D004259 ORTHO05D005014 8.8e-55 218.4 152 68.4
MCO16G222 Micromonas commoda HOM05D004259 ORTHO05D005014 2.8e-53 213.4 334 37.7
CDE10G0377 Ceratophyllum demersum HOM05D004259 ORTHO05D005014 2.7e-48 196.8 136 70.6
HPP92_027220 Vanilla planifolia HOM05D004259 ORTHO05D005014 2.1e-40 170.6 126 69.0
PRCOL_00004897 Prasinoderma coloniale HOM05D004259 ORTHO05D005014 2.8e-37 160.2 343 30.6
Nitab4.5_0000017g0120 Nicotiana tabacum HOM05D004259 ORTHO05D005014 3.2e-33 146.7 189 45.5
AL4G34080 Arabidopsis lyrata HOM05D004259 ORTHO05D005014 5.5e-33 146.0 103 70.9
Cc00_g16720 Coffea canephora HOM05D004259 ORTHO05D005014 1.2e-32 144.8 116 62.9
Aa31LG5G22990 Aethionema arabicum HOM05D004259 ORTHO05D005014 2.0e-30 137.5 128 53.9
Gohir.D02G104501 Gossypium hirsutum HOM05D004259 ORTHO05D005014 2.0e-30 137.5 85 76.5
Gohir.D12G080700 Gossypium hirsutum HOM05D004259 ORTHO05D005014 9.8e-30 135.2 87 74.7
Gohir.D10G137766 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.3e-29 134.8 96 66.7
Gorai.005G118700 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.7e-29 134.4 85 74.1
Gorai.011G277900 Gossypium raimondii HOM05D004259 ORTHO05D005014 4.9e-29 132.9 83 77.1
Cre03.g199400 Chlamydomonas reinhardtii HOM05D004259 ORTHO05D005014 9.1e-28 128.6 328 29.9
Actinidia38053 Actinidia chinensis HOM05D004259 ORTHO05D005014 1.5e-25 121.3 90 68.9
Gohir.D03G074850 Gossypium hirsutum HOM05D004259 ORTHO05D005014 2.1e-24 117.5 79 72.2
Gorai.008G056700 Gossypium raimondii HOM05D004259 ORTHO05D005014 8.0e-24 115.5 79 70.9
Gohir.D01G124400 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.0e-23 115.2 78 71.8
Gohir.D02G123750 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.0e-23 115.2 78 71.8
Gohir.D04G089650 Gossypium hirsutum HOM05D004259 ORTHO05D005014 3.0e-23 113.6 79 69.6
Gorai.005G130400 Gossypium raimondii HOM05D004259 ORTHO05D005014 3.0e-23 113.6 78 70.5
Gohir.D09G120150 Gossypium hirsutum HOM05D004259 ORTHO05D005014 4.0e-23 113.2 78 70.5
Gorai.004G133100 Gossypium raimondii HOM05D004259 ORTHO05D005014 8.9e-23 112.1 78 70.5
Cc06_g20720 Coffea canephora HOM05D004259 ORTHO05D005014 1.2e-22 111.7 104 60.6
Cfa024619 Carpinus fangiana HOM05D004259 ORTHO05D005014 7.5e-22 109.0 331 26.3
Aa31sc112G60 Aethionema arabicum HOM05D004259 ORTHO05D005014 9.8e-22 108.6 78 67.9
PSO724G0286 Papaver somniferum HOM05D004259 ORTHO05D005014 1.3e-21 108.2 110 49.1
Gohir.D10G134400 Gossypium hirsutum HOM05D004259 ORTHO05D005014 2.2e-21 107.5 70 71.4
Gorai.012G099900 Gossypium raimondii HOM05D004259 ORTHO05D005014 2.2e-21 107.5 79 65.8
PSO724G0742 Papaver somniferum HOM05D004259 ORTHO05D005014 2.2e-21 107.5 110 49.1
Gorai.006G043100 Gossypium raimondii HOM05D004259 ORTHO05D005014 4.9e-21 106.3 101 57.4
SEGI_22221 Sequoiadendron giganteum HOM05D004259 ORTHO05D005014 9.5e-17 92.0 73 64.4
Cc11_g02680 Coffea canephora HOM05D004259 ORTHO05D005014 2.1e-16 90.9 60 71.7
Gohir.D09G088725 Gossypium hirsutum HOM05D004259 ORTHO05D005014 4.0e-15 86.7 56 75.0
EL10Ac4g08135 Beta vulgaris HOM05D004259 ORTHO05D005014 2.0e-14 84.3 45 84.4
Sabra15G0136400 Salix brachista HOM05D004259 ORTHO05D004947 5.8e-14 82.8 67 67.2
Cc00_g00370 Coffea canephora HOM05D004259 ORTHO05D005014 2.3e-10 70.9 52 63.5
Cc01_g09720 Coffea canephora HOM05D004259 ORTHO05D005014 3.9e-10 70.1 43 76.7
Gohir.D09G037800 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.1e-09 68.6 43 79.1
Cc02_g31720 Coffea canephora HOM05D004259 ORTHO05D005014 7.3e-09 65.9 42 71.4
Gorai.011G153000 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.6e-08 64.7 45 71.1
Cc10_g11800 Coffea canephora HOM05D006912 ORTHO05D008686 6.2e-08 62.8 43 67.4
Aa31LG5G23020 Aethionema arabicum HOM05D004259 ORTHO05D005014 1.4e-07 61.6 48 62.5
Cc09_g06650 Coffea canephora HOM05D004259 ORTHO05D005014 4.0e-07 60.1 42 64.3
Gohir.D01G066700 Gossypium hirsutum HOM05D000706 ORTHO05D013538 4.4e-06 56.6 49 53.1
Gohir.D09G143401 Gossypium hirsutum HOM05D000706 ORTHO05D013538 9.8e-06 55.5 49 53.1
Gorai.007G356500 Gossypium raimondii HOM05D000706 ORTHO05D013538 9.8e-06 55.5 49 53.1


User provided reference genes

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