Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3C565G3 Lonicera japonica HOM05D005505 ORTHO05D006974 1.6e-252 875.5 436 100.0
Lj3A577G5 Lonicera japonica HOM05D005505 ORTHO05D006974 1.4e-214 749.6 493 79.5
Lj3A578G8 Lonicera japonica HOM05D005505 ORTHO05D006974 4.4e-205 718.0 363 98.3
Actinidia35954 Actinidia chinensis HOM05D005505 ORTHO05D006974 3.6e-191 671.8 441 76.9
Ciclev10004754m.g Citrus clementina HOM05D005505 ORTHO05D006974 5.2e-190 667.9 436 75.2
vmacro00503 Vaccinium macrocarpon HOM05D005505 ORTHO05D006974 3.4e-189 665.2 439 74.0
Lj3A579T16 Lonicera japonica HOM05D005505 ORTHO05D006974 2.9e-188 662.1 414 82.1
DCAR_030788 Daucus carota HOM05D005505 ORTHO05D006974 1.1e-187 660.2 439 73.6
Rhsim09G0051500 Rhododendron simsii HOM05D005505 ORTHO05D006974 1.1e-187 660.2 439 73.6
Manes.03G149700 Manihot esculenta HOM05D005505 ORTHO05D006974 6.0e-186 654.4 439 74.0
RcHm_v2.0_Chr7g0196051 Rosa chinensis HOM05D005505 ORTHO05D006974 3.0e-185 652.1 439 73.6
QL09p050425 Quercus lobata HOM05D005505 ORTHO05D006974 3.9e-185 651.7 439 73.8
Prupe.5G110900 Prunus persica HOM05D005505 ORTHO05D006974 6.6e-185 651.0 439 73.6
Potri.001G051200 Populus trichocarpa HOM05D005505 ORTHO05D006974 1.1e-184 650.2 439 73.3
Sabra01G0035800 Salix brachista HOM05D005505 ORTHO05D006974 2.5e-184 649.0 436 72.7
FAN18G0472 Fragaria x ananassa HOM05D005505 ORTHO05D006974 3.3e-184 648.7 439 73.3
COL.COLO4_20306 Corchorus olitorius HOM05D005505 ORTHO05D006974 3.6e-183 645.2 439 73.6
ECA233G0503 Erigeron canadensis HOM05D005505 ORTHO05D006974 8.0e-183 644.0 438 72.8
CiPaw.02G067600 Carya illinoinensis HOM05D005505 ORTHO05D006974 1.1e-182 643.7 439 72.7
Thecc.04G209900 Theobroma cacao HOM05D005505 ORTHO05D006974 1.4e-182 643.3 439 72.7
FAN13G1424 Fragaria x ananassa HOM05D005505 ORTHO05D006974 1.8e-182 642.9 439 72.9
HanXRQChr10g0278391 Helianthus annuus HOM05D005505 ORTHO05D006974 8.9e-182 640.6 441 73.0
Atru.chr4.1761 Acer truncatum HOM05D005505 ORTHO05D006974 2.6e-181 639.0 436 71.6
FvH4_5g03680 Fragaria vesca HOM05D005505 ORTHO05D006974 4.4e-181 638.3 439 72.9
TAR636G3130 Trochodendron aralioides HOM05D005505 ORTHO05D006974 2.2e-180 636.0 440 74.1
FAN13G2718 Fragaria x ananassa HOM05D005505 ORTHO05D006974 1.9e-179 632.9 447 71.4
Duzib212G0911 Durio zibethinus HOM05D005505 ORTHO05D006974 7.0e-179 630.9 439 72.0
TWI53G0062 Tripterygium wilfordii HOM05D005505 ORTHO05D006974 7.0e-179 630.9 436 73.2
MD06G1096300 Malus domestica HOM05D005505 ORTHO05D006974 1.7e-177 626.3 439 71.5
SalBow2G0189 Salvia bowleyana HOM05D005505 ORTHO05D006974 5.1e-177 624.8 439 71.3
Eucgr.H00086 Eucalyptus grandis HOM05D005505 ORTHO05D006974 1.1e-176 623.6 439 70.4
Gohir.A09G202800 Gossypium hirsutum HOM05D005505 ORTHO05D006974 1.9e-176 622.9 440 70.7
Gorai.006G220300 Gossypium raimondii HOM05D005505 ORTHO05D006974 9.5e-176 620.5 440 70.2
Peaxi162Scf00047g01039 Petunia axillaris HOM05D005505 ORTHO05D006974 2.8e-175 619.0 439 69.7
Cc03_g07370 Coffea canephora HOM05D005505 ORTHO05D006974 3.6e-175 618.6 439 69.9
MELO3C016329.2 Cucumis melo HOM05D005505 ORTHO05D006974 8.1e-175 617.5 439 70.6
CAN.G500.70 Capsicum annuum HOM05D005505 ORTHO05D006974 2.3e-174 615.9 439 70.4
Gohir.D09G196900 Gossypium hirsutum HOM05D005505 ORTHO05D006974 3.1e-174 615.5 440 69.5
THA.LOC104821613 Tarenaya hassleriana HOM05D005505 ORTHO05D006974 3.1e-174 615.5 438 69.9
Migut.G00632 Erythranthe guttata HOM05D005505 ORTHO05D006974 1.2e-173 613.6 439 70.4
CsaV3_4G006210 Cucumis sativus L. HOM05D005505 ORTHO05D006974 1.5e-173 613.2 439 70.2
MSTRG.9830 Avicennia marina HOM05D005505 ORTHO05D006974 2.6e-173 612.5 439 70.8
PGSC0003DMG400029626 Solanum tuberosum HOM05D005505 ORTHO05D006974 2.6e-173 612.5 436 70.4
Nitab4.5_0004881g0030 Nicotiana tabacum HOM05D005505 ORTHO05D006974 7.5e-173 610.9 444 69.6
arahy.Tifrunner.gnm1.ann1.ZRDJ5X Arachis hypogaea HOM05D005505 ORTHO05D006974 9.9e-173 610.5 436 69.7
CANSAT21G2364 Cannabis sativa HOM05D005505 ORTHO05D006974 1.3e-172 610.1 440 69.1
Solyc09g091570.2 Solanum lycopersicum HOM05D005505 ORTHO05D006974 1.3e-172 610.1 439 69.9
arahy.Tifrunner.gnm1.ann1.H9DAM7 Arachis hypogaea HOM05D005505 ORTHO05D006974 2.2e-172 609.4 436 69.5
arahy.Tifrunner.gnm1.ann1.QX4MR3 Arachis hypogaea HOM05D005505 ORTHO05D006974 2.9e-172 609.0 436 70.0
Nitab4.5_0000306g0020 Nicotiana tabacum HOM05D005505 ORTHO05D006974 2.9e-172 609.0 452 68.1
Sopen09g034490 Solanum pennellii HOM05D005505 ORTHO05D006974 2.9e-172 609.0 439 69.7
FAN08G1440 Fragaria x ananassa HOM05D005505 ORTHO05D006974 3.7e-172 608.6 441 69.8
ClCG07G007730 Citrullus lanatus HOM05D005505 ORTHO05D006974 4.9e-172 608.2 463 66.7
MBI10_g16825_MAGBIO Magnolia biondii HOM05D005505 ORTHO05D006974 6.4e-172 607.8 451 69.4
Sed0009691 Sechium edule HOM05D005505 ORTHO05D006974 1.1e-171 607.1 440 68.9
Lsat_1_v5_gn_2_43080 Lactuca sativa HOM05D005505 ORTHO05D006974 1.4e-171 606.7 431 69.6
Nn8g40056 Nelumbo nucifera HOM05D005505 ORTHO05D006974 2.4e-171 605.9 440 69.1
BcaB06g26566 Brassica carinata HOM05D005505 ORTHO05D006974 4.1e-171 605.1 438 68.7
A07p08370 Brassica napus HOM05D005505 ORTHO05D006974 7.1e-171 604.4 438 68.5
C07p13070 Brassica napus HOM05D005505 ORTHO05D006974 1.6e-170 603.2 438 68.3
C09p75660 Brassica napus HOM05D005505 ORTHO05D006974 1.6e-170 603.2 438 68.3
BraA07t28623Z Brassica rapa HOM05D005505 ORTHO05D006974 1.6e-170 603.2 438 68.3
PGR142G3770 Punica granatum HOM05D005505 ORTHO05D006974 1.6e-170 603.2 439 68.6
Carub.0003s2430 Capsella rubella HOM05D005505 ORTHO05D006974 2.1e-170 602.8 438 68.9
Glyma.08G345200 Glycine max HOM05D005505 ORTHO05D006974 2.7e-170 602.4 436 67.7
BcaC06g35602 Brassica carinata HOM05D005505 ORTHO05D006974 3.5e-170 602.1 438 68.3
BolC7t41801H Brassica oleracea HOM05D005505 ORTHO05D006974 3.5e-170 602.1 438 68.3
Phvul.008G135500 Phaseolus vulgaris HOM05D005505 ORTHO05D006974 7.8e-170 600.9 436 67.4
AT3G24200 Arabidopsis thaliana HOM05D005505 ORTHO05D006974 3.9e-169 598.6 438 68.7
FAN04G0744 Fragaria x ananassa HOM05D005505 ORTHO05D006974 3.9e-169 598.6 439 68.3
FAN04G1715 Fragaria x ananassa HOM05D005505 ORTHO05D006974 3.9e-169 598.6 439 68.3
TPR.G26848 Trifolium pratense HOM05D005505 ORTHO05D006974 8.6e-169 597.4 436 67.0
CARHR099990 Cardamine hirsuta HOM05D005505 ORTHO05D006974 1.9e-168 596.3 438 67.8
Lalb_Chr03g0041191 Lupinus albus HOM05D005505 ORTHO05D006974 1.9e-168 596.3 435 67.4
Lalb_Chr19g0126031 Lupinus albus HOM05D005505 ORTHO05D006974 1.9e-168 596.3 436 67.7
Thhalv10002522m.g Eutrema salsugineum HOM05D005505 ORTHO05D006974 2.5e-168 595.9 438 67.8
SGA_v2.0_scaffold380G50374 Striga asiatica HOM05D005505 ORTHO05D006974 7.3e-168 594.3 438 68.9
Medtr2g060550 Medicago truncatula HOM05D005505 ORTHO05D006974 9.5e-168 594.0 436 66.5
Lj1g0020537 Lotus japonicus HOM05D005505 ORTHO05D006974 1.2e-167 593.6 436 67.0
Medtr7g051960 Medicago truncatula HOM05D005505 ORTHO05D006974 1.1e-166 590.5 432 66.7
SGA_v2.0_scaffold57G20149 Striga asiatica HOM05D005505 ORTHO05D006974 1.1e-166 590.5 438 68.3
Ca_07402_v3 Cicer arietinum L. HOM05D005505 ORTHO05D006974 1.4e-166 590.1 436 65.6
Oeu026858.1 Olea europaea HOM05D005505 ORTHO05D006974 1.4e-166 590.1 438 69.4
Psat7g176120 Pisum sativum HOM05D005505 ORTHO05D006974 6.8e-166 587.8 436 67.0
Psat3g151840 Pisum sativum HOM05D005505 ORTHO05D006974 5.8e-165 584.7 436 65.8
ATR0787G156 Amborella trichopoda HOM05D005505 ORTHO05D006974 7.6e-165 584.3 446 66.8
Lj5g0018216 Lotus japonicus HOM05D005505 ORTHO05D006974 6.4e-164 581.3 436 65.8
Aqoxy2G03778 Aquilegia oxysepala HOM05D005505 ORTHO05D006974 5.4e-163 578.2 438 67.1
MD14G1116500 Malus domestica HOM05D005505 ORTHO05D006974 3.5e-162 575.5 426 67.4
Sc24g0002560 Simmondsia chinensis HOM05D005505 ORTHO05D006974 6.0e-162 574.7 435 66.0
GSVIVG01012536001 Vitis vinifera HOM05D005505 ORTHO05D006974 1.3e-161 573.5 430 67.9
Cpa.g.sc59.105 Carica papaya HOM05D005505 ORTHO05D006974 5.1e-161 571.6 527 58.1
PSO017G4123 Papaver somniferum HOM05D005505 ORTHO05D006974 4.3e-160 568.5 435 64.6
Aa31LG8G10580 Aethionema arabicum HOM05D005505 ORTHO05D006974 1.4e-158 563.5 439 64.2
AUR62025680 Chenopodium quinoa HOM05D005505 ORTHO05D006974 3.1e-158 562.4 437 64.5
EL10Ac7g18096 Beta vulgaris HOM05D005505 ORTHO05D006974 5.3e-158 561.6 437 64.1
AUR62001295 Chenopodium quinoa HOM05D005505 ORTHO05D006974 1.5e-157 560.1 437 64.5
PSO063G3796 Papaver somniferum HOM05D005505 ORTHO05D006974 2.2e-156 556.2 435 63.2
unitig_32.g10868 Utricularia gibba HOM05D005505 ORTHO05D006974 4.2e-155 552.0 438 62.8
Duzib151G0717 Durio zibethinus HOM05D005505 ORTHO05D006974 6.0e-154 548.1 439 64.7
Lj3A580T64 Lonicera japonica HOM05D005505 ORTHO05D006974 7.8e-154 547.7 390 75.6
Os03g0839100 Oryza sativa ssp. japonica HOM05D005505 ORTHO05D006974 8.1e-151 537.7 446 62.3
Zm00001eb211070 Zea mays HOM05D005505 ORTHO05D006974 2.4e-150 536.2 448 60.5
Hund05658 Selenicereus undatus HOM05D005505 ORTHO05D006974 2.0e-149 533.1 482 58.3
Sp3g21750 Schrenkiella parvula HOM05D005505 ORTHO05D006974 7.1e-147 524.6 393 66.7
Haze_11578 Corylus avellana HOM05D005505 ORTHO05D006974 1.3e-145 520.4 356 72.5
SHI00938 Sapria himalayana HOM05D005505 ORTHO05D006974 4.9e-140 501.9 435 58.4
Lj3A565G17 Lonicera japonica HOM05D005505 ORTHO05D006974 6.0e-138 495.0 320 80.3
Dinv38263 Davidia involucrata HOM05D005505 ORTHO05D006974 2.3e-137 493.0 305 78.7
SEGI_35699 Sequoiadendron giganteum HOM05D005505 ORTHO05D006974 1.8e-134 483.4 451 56.1
BcaC05g30344 Brassica carinata HOM05D005505 ORTHO05D007330 7.1e-131 471.5 432 57.4
SpUn0001_0240 Schrenkiella parvula HOM05D005505 ORTHO05D006974 1.5e-125 453.8 438 55.3
CDE02G0375 Ceratophyllum demersum HOM05D005505 ORTHO05D006974 8.8e-121 438.0 385 59.0
SMO351G0576 Selaginella moellendorffii HOM05D005505 ORTHO05D006974 1.8e-105 387.1 436 48.9
Mapoly0028s0013 Marchantia polymorpha HOM05D005505 ORTHO05D006974 2.8e-103 379.8 457 45.1
Pp3c26_12110 Physcomitrium patens HOM05D005505 ORTHO05D006974 2.6e-101 373.2 436 48.9
SpUn0001_0260 Schrenkiella parvula HOM05D005505 ORTHO05D006974 1.3e-100 370.9 478 45.2
arahy.Tifrunner.gnm1.ann1.NU2AG4 Arachis hypogaea HOM05D005505 ORTHO05D006974 8.8e-97 358.2 297 61.3
Gohir.D09G197033 Gossypium hirsutum HOM05D005505 ORTHO05D006974 1.7e-95 354.0 278 64.0
CAN.G220.36 Capsicum annuum HOM05D005505 ORTHO05D006974 3.9e-68 263.1 361 45.2
MCO15G051 Micromonas commoda HOM05D005505 ORTHO05D006974 2.8e-66 256.9 447 37.1
Cre02.g112850 Chlamydomonas reinhardtii HOM05D005505 ORTHO05D006974 8.9e-65 251.9 450 36.4
Lj3A566G16 Lonicera japonica HOM05D005505 ORTHO05D006974 1.2e-64 251.5 156 82.7
HPP92_019865 Vanilla planifolia HOM05D005505 ORTHO05D006974 4.7e-58 229.6 427 37.5
AL3G39020 Arabidopsis lyrata HOM05D005505 ORTHO05D006974 3.1e-57 226.9 168 66.1
PRCOL_00000308 Prasinoderma coloniale HOM05D005505 ORTHO05D006974 3.3e-51 206.8 370 36.2
BolC5t35086H Brassica oleracea HOM05D005505 ORTHO05D006974 1.4e-46 191.4 150 63.3
Cfa022008 Carpinus fangiana HOM05D005505 ORTHO05D006974 5.8e-40 169.5 458 31.0
CBR_g34015 Chara braunii HOM05D005505 ORTHO05D006974 1.1e-35 155.2 247 39.3
CBR_g34017 Chara braunii HOM05D005505 ORTHO05D006974 1.5e-35 154.8 211 41.2
Lj3A578G7 Lonicera japonica HOM05D005505 ORTHO05D006974 8.4e-31 139.0 92 80.4
SpUn0242_NC2199 Schrenkiella parvula HOM05D005505 ORTHO05D006974 4.2e-30 136.7 102 67.6
Ca_29365_v3 Cicer arietinum L. HOM05D005505 ORTHO05D006974 6.7e-20 102.8 318 27.0
Lj3A565T20 Lonicera japonica HOM05D005505 ORTHO05D006974 4.6e-13 80.1 65 76.9
Haze_11577 Corylus avellana HOM05D005505 ORTHO05D006974 5.1e-12 76.6 61 65.6
AL3G39220 Arabidopsis lyrata HOM05D005505 ORTHO05D000101 1.3e-10 72.0 44 70.5
CDE09G0201 Ceratophyllum demersum HOM05D000090 ORTHO05D001584 2.2e-10 71.2 49 69.4
Lj3A579T17 Lonicera japonica HOM05D005505 ORTHO05D006974 5.0e-07 60.1 36 80.6


User provided reference genes

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