Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3C54T6 Lonicera japonica HOM05D005452 ORTHO05D006618 5.5e-159 564.3 296 100.0
Lj2C149T2 Lonicera japonica HOM05D002180 ORTHO05D001339 1.8e-85 320.1 166 98.8
Lj7C284T2 Lonicera japonica HOM05D002180 ORTHO05D001339 1.8e-85 320.1 166 98.8
Lj5C420T4 Lonicera japonica HOM05D002180 ORTHO05D001339 6.4e-75 285.0 190 80.5
Lj8C602G3 Lonicera japonica HOM05D002180 ORTHO05D001339 3.2e-74 282.7 166 88.6
Lj5A834G28 Lonicera japonica HOM05D002180 ORTHO05D001339 7.1e-74 281.6 189 78.8
Lj8C602G1 Lonicera japonica HOM05D002180 ORTHO05D001339 3.4e-68 262.7 166 83.7
Lj1A1036T17 Lonicera japonica HOM05D002180 ORTHO05D001339 2.2e-67 260.0 166 81.9
Lj6A449T12 Lonicera japonica HOM05D002180 ORTHO05D001339 4.1e-61 239.2 166 77.1
Lj2A24T65 Lonicera japonica HOM05D002180 ORTHO05D001339 6.5e-59 231.9 166 74.1
Lj3A240T20 Lonicera japonica HOM05D002180 ORTHO05D001339 1.2e-57 227.6 166 74.1
Lju110C5T5 Lonicera japonica HOM05D002180 ORTHO05D001339 1.5e-47 194.1 112 89.3
Lj1A269G36 Lonicera japonica HOM05D002180 ORTHO05D001339 7.7e-44 181.8 127 76.4
Lj5A641T5 Lonicera japonica HOM05D002180 ORTHO05D001339 6.3e-38 162.2 98 87.8
CSS0031935 Camellia sinensis var. sinensis HOM05D005452 ORTHO05D006618 7.2e-34 148.7 107 75.7
Lj1A478T45 Lonicera japonica HOM05D002180 ORTHO05D001339 8.0e-33 145.2 158 56.3
Hma1.2p1_0079F.1_g041110 Hydrangea macrophylla HOM05D005452 ORTHO05D006618 1.8e-32 144.1 86 88.4
Nitab4.5_0002322g0150 Nicotiana tabacum HOM05D001410 ORTHO05D006618 2.3e-32 143.7 128 67.2
Nitab4.5_0004217g0010 Nicotiana tabacum HOM05D001410 ORTHO05D006618 1.5e-31 141.0 111 73.0
Actinidia08127 Actinidia chinensis HOM05D005452 ORTHO05D006618 2.6e-31 140.2 107 73.8
Dinv15209 Davidia involucrata HOM05D005452 ORTHO05D006618 2.6e-31 140.2 107 73.8
GSVIVG01003295001 Vitis vinifera HOM05D005452 ORTHO05D006618 7.5e-31 138.7 109 74.3
Nitab4.5_0000524g0050 Nicotiana tabacum HOM05D005452 ORTHO05D006618 9.7e-31 138.3 108 72.2
TAR371G0357 Trochodendron aralioides HOM05D005452 ORTHO05D006618 3.7e-30 136.3 98 75.5
Actinidia01359 Actinidia chinensis HOM05D005452 ORTHO05D006618 6.3e-30 135.6 90 81.1
Sopen10g023920 Solanum pennellii HOM05D005452 ORTHO05D006618 6.3e-30 135.6 104 73.1
QL03p056962 Quercus lobata HOM05D005452 ORTHO05D006618 1.1e-29 134.8 112 67.0
Rhsim12G0039600 Rhododendron simsii HOM05D005452 ORTHO05D006618 1.4e-29 134.4 97 77.3
Thecc.02G263300 Theobroma cacao HOM05D005452 ORTHO05D006618 1.8e-29 134.0 107 67.3
TAR629G2696 Trochodendron aralioides HOM05D005452 ORTHO05D006618 3.1e-29 133.3 97 75.3
Solyc10g054060.2 Solanum lycopersicum HOM05D005452 ORTHO05D006618 4.1e-29 132.9 104 72.1
COL.COLO4_23485 Corchorus olitorius HOM05D005452 ORTHO05D006618 5.3e-29 132.5 107 70.1
ClCG10G012250 Citrullus lanatus HOM05D005452 ORTHO05D006618 1.2e-28 131.3 77 89.6
Duzib268G1139 Durio zibethinus HOM05D005452 ORTHO05D006618 1.6e-28 131.0 107 67.3
vmacro06707 Vaccinium macrocarpon HOM05D005452 ORTHO05D006618 1.6e-28 131.0 99 74.7
Oeu056705.1 Olea europaea HOM05D005452 ORTHO05D006618 2.0e-28 130.6 135 57.0
DCAR_003344 Daucus carota HOM05D005452 ORTHO05D006618 2.7e-28 130.2 107 63.6
Ciclev10033123m.g Citrus clementina HOM05D005452 ORTHO05D006618 4.5e-28 129.4 79 86.1
Lsat_1_v5_gn_4_85301 Lactuca sativa HOM05D005452 ORTHO05D006618 2.9e-27 126.7 107 62.6
Lsat_1_v5_gn_8_152800 Lactuca sativa HOM05D005452 ORTHO05D006618 2.9e-27 126.7 103 66.0
Peaxi162Scf00128g00434 Petunia axillaris HOM05D005452 ORTHO05D006618 2.9e-27 126.7 105 67.6
CAN.G128.103 Capsicum annuum HOM05D005452 ORTHO05D000001 3.8e-27 126.3 142 57.7
ECA233G5110 Erigeron canadensis HOM05D005452 ORTHO05D006618 3.8e-27 126.3 107 61.7
FvH4_5g21170 Fragaria vesca HOM05D005452 ORTHO05D006618 3.8e-27 126.3 102 72.5
Hund06040 Selenicereus undatus HOM05D005452 ORTHO05D006618 3.8e-27 126.3 91 74.7
HanXRQChr12g0371911 Helianthus annuus HOM05D005452 ORTHO05D006618 5.0e-27 125.9 98 70.4
Manes.13G021600 Manihot esculenta HOM05D005452 ORTHO05D006618 5.0e-27 125.9 105 64.8
Sc04g0009650 Simmondsia chinensis HOM05D005452 ORTHO05D006618 5.0e-27 125.9 103 68.0
CiPaw.05G172100 Carya illinoinensis HOM05D005452 ORTHO05D006618 8.5e-27 125.2 114 61.4
Hund25399 Selenicereus undatus HOM05D005452 ORTHO05D006618 8.5e-27 125.2 86 77.9
RcHm_v2.0_Chr7g0208311 Rosa chinensis HOM05D005452 ORTHO05D006618 1.1e-26 124.8 101 72.3
FAN13G0782 Fragaria x ananassa HOM05D005452 ORTHO05D006618 1.5e-26 124.4 102 71.6
FAN04G1087 Fragaria x ananassa HOM05D005452 ORTHO05D006618 1.9e-26 124.0 101 71.3
unitig_22.g6942 Utricularia gibba HOM05D005452 ORTHO05D006618 1.9e-26 124.0 101 64.4
FAN08G2976 Fragaria x ananassa HOM05D005452 ORTHO05D006618 2.5e-26 123.6 101 71.3
CiPaw.04G056800 Carya illinoinensis HOM05D005452 ORTHO05D006618 3.2e-26 123.2 79 79.7
FAN18G0628 Fragaria x ananassa HOM05D005452 ORTHO05D006618 3.2e-26 123.2 100 69.0
Sed0011581 Sechium edule HOM05D005452 ORTHO05D006618 4.2e-26 122.9 107 64.5
SGA_v2.0_scaffold293G47424 Striga asiatica HOM05D005452 ORTHO05D006618 4.2e-26 122.9 86 73.3
EL10Ac5g10516 Beta vulgaris HOM05D005452 ORTHO05D006618 9.4e-26 121.7 85 75.3
CANSAT11G1680 Cannabis sativa HOM05D005452 ORTHO05D006618 9.4e-26 121.7 86 75.6
AUR62024237 Chenopodium quinoa HOM05D005452 ORTHO05D006618 9.4e-26 121.7 98 68.4
MELO3C030920.2 Cucumis melo HOM05D005452 ORTHO05D006618 1.2e-25 121.3 79 81.0
Peaxi162Scf00067g00116 Petunia axillaris HOM05D005452 ORTHO05D006618 1.2e-25 121.3 106 63.2
AUR62005503 Chenopodium quinoa HOM05D005452 ORTHO05D006618 1.6e-25 120.9 98 68.4
Prupe.5G046400 Prunus persica HOM05D005452 ORTHO05D006618 2.7e-25 120.2 77 80.5
PGR102G3216 Punica granatum HOM05D005452 ORTHO05D006618 2.7e-25 120.2 104 62.5
CsaV3_3G032030 Cucumis sativus L. HOM05D005452 ORTHO05D006618 3.6e-25 119.8 107 64.5
Eucgr.B03269 Eucalyptus grandis HOM05D005452 ORTHO05D006618 6.1e-25 119.0 104 68.3
Gohir.A05G223400 Gossypium hirsutum HOM05D005452 ORTHO05D006618 1.4e-24 117.9 107 64.5
Gorai.009G233700 Gossypium raimondii HOM05D005452 ORTHO05D006618 1.4e-24 117.9 107 64.5
Lalb_Chr03g0040661 Lupinus albus HOM05D005452 ORTHO05D006618 1.8e-24 117.5 79 77.2
Atru.chr11.2163 Acer truncatum HOM05D005452 ORTHO05D006618 2.3e-24 117.1 79 74.7
ATR0691G211 Amborella trichopoda HOM05D005452 ORTHO05D006618 2.3e-24 117.1 102 62.7
Haze_12270 Corylus avellana HOM05D004112 ORTHO05D004739 3.0e-24 116.7 105 62.9
Lalb_Chr01g0021741 Lupinus albus HOM05D005452 ORTHO05D006618 3.0e-24 116.7 79 77.2
TWI36G1628 Tripterygium wilfordii HOM05D005452 ORTHO05D006618 3.0e-24 116.7 103 61.2
Migut.K00615 Erythranthe guttata HOM05D005452 ORTHO05D006618 4.0e-24 116.3 85 72.9
Cfa009234 Carpinus fangiana HOM05D005452 ORTHO05D006618 5.2e-24 115.9 106 62.3
SalBow6G0335 Salvia bowleyana HOM05D005452 ORTHO05D006618 5.2e-24 115.9 85 71.8
SalBow6G1267 Salvia bowleyana HOM05D005452 ORTHO05D006618 5.2e-24 115.9 85 71.8
SalBow6G2856 Salvia bowleyana HOM05D005452 ORTHO05D006618 5.2e-24 115.9 85 71.8
SalBow6G3385 Salvia bowleyana HOM05D005452 ORTHO05D006618 5.2e-24 115.9 86 69.8
MD06G1040200 Malus domestica HOM05D005452 ORTHO05D006618 6.8e-24 115.5 80 76.2
SGA_v2.0_scaffold12G06036 Striga asiatica HOM05D005452 ORTHO05D006618 6.8e-24 115.5 83 73.5
Cpa.g.c31584 Carica papaya HOM05D005452 ORTHO05D006618 8.8e-24 115.2 107 62.6
MD09G1284200 Malus domestica HOM05D005452 ORTHO05D006618 8.8e-24 115.2 77 77.9
Oeu049174.1 Olea europaea HOM05D005452 ORTHO05D006618 8.8e-24 115.2 85 72.9
SalBow6G0301 Salvia bowleyana HOM05D005452 ORTHO05D006618 1.5e-23 114.4 83 72.3
SalBow6G4340 Salvia bowleyana HOM05D005452 ORTHO05D006618 1.5e-23 114.4 83 72.3
THA.LOC104824009 Tarenaya hassleriana HOM05D005452 ORTHO05D006618 1.5e-23 114.4 89 69.7
THA.LOC104805276 Tarenaya hassleriana HOM05D005452 ORTHO05D006618 2.0e-23 114.0 89 69.7
SalBow6G6484 Salvia bowleyana HOM05D005452 ORTHO05D006618 3.4e-23 113.2 85 70.6
Lj6A103G46 Lonicera japonica HOM05D002180 ORTHO05D001339 4.4e-23 112.8 77 77.9
SalBow6G4107 Salvia bowleyana HOM05D005452 ORTHO05D006618 4.4e-23 112.8 82 72.0
SalBow6G4977 Salvia bowleyana HOM05D005452 ORTHO05D006618 4.4e-23 112.8 82 72.0
Ca_14963_v3 Cicer arietinum L. HOM05D005452 ORTHO05D006618 5.7e-23 112.5 110 62.7
VMungo1080G1735 Vigna mungo HOM05D005452 ORTHO05D006618 5.7e-23 112.5 111 60.4
TWI18G1019 Tripterygium wilfordii HOM05D005452 ORTHO05D006618 7.5e-23 112.1 103 57.3
Lj4g0014743 Lotus japonicus HOM05D005452 ORTHO05D006618 9.8e-23 111.7 110 62.7
MBI15_g04991_MAGBIO Magnolia biondii HOM05D005452 ORTHO05D006618 1.3e-22 111.3 100 64.0
Lj5g0027337 Lotus japonicus HOM05D005452 ORTHO05D006618 1.7e-22 110.9 79 74.7
SHI03748 Sapria himalayana HOM05D005452 ORTHO05D006618 1.7e-22 110.9 98 63.3
MD02G1109400 Malus domestica HOM05D005452 ORTHO05D006618 2.2e-22 110.5 77 74.0
Glyma.09G244200 Glycine max HOM05D005452 ORTHO05D006618 2.8e-22 110.2 79 75.9
Glyma.18G249300 Glycine max HOM05D005452 ORTHO05D006618 8.3e-22 108.6 111 60.4
TPR.G32914 Trifolium pratense HOM05D005452 ORTHO05D006618 8.3e-22 108.6 111 63.1
Aa31LG2G6150 Aethionema arabicum HOM05D005452 ORTHO05D006618 1.1e-21 108.2 114 57.9
Medtr3g464760 Medicago truncatula HOM05D005452 ORTHO05D006618 1.4e-21 107.8 110 60.9
BcaB07g30231 Brassica carinata HOM05D005452 ORTHO05D006618 2.4e-21 107.1 89 67.4
BcaC03g17336 Brassica carinata HOM05D005452 ORTHO05D006618 2.4e-21 107.1 89 67.4
A02p34530 Brassica napus HOM05D005452 ORTHO05D006618 2.4e-21 107.1 89 67.4
C02p52850 Brassica napus HOM05D005452 ORTHO05D006618 2.4e-21 107.1 89 67.4
C07p35420 Brassica napus HOM05D005452 ORTHO05D006618 2.4e-21 107.1 89 66.3
BraA02t08463Z Brassica rapa HOM05D005452 ORTHO05D006618 2.4e-21 107.1 89 67.4
Psat5g193600 Pisum sativum HOM05D005452 ORTHO05D006618 2.4e-21 107.1 103 62.1
A06p42060 Brassica napus HOM05D005452 ORTHO05D006618 3.1e-21 106.7 89 66.3
BolC7t44066H Brassica oleracea HOM05D005452 ORTHO05D006618 3.1e-21 106.7 89 66.3
BraA06t27123Z Brassica rapa HOM05D005452 ORTHO05D006618 3.1e-21 106.7 89 66.3
VMungo1383G1569 Vigna mungo HOM05D005452 ORTHO05D006618 3.1e-21 106.7 79 72.2
Nn1g08774 Nelumbo nucifera HOM05D005452 ORTHO05D006618 4.1e-21 106.3 85 64.7
AT3G26360 Arabidopsis thaliana HOM05D005452 ORTHO05D006618 5.4e-21 105.9 90 64.4
Sp2g15510 Schrenkiella parvula HOM05D005452 ORTHO05D006618 9.1e-21 105.1 90 64.4
Thhalv10005184m.g Eutrema salsugineum HOM05D005452 ORTHO05D006618 1.2e-20 104.8 89 64.0
Thhalv10005186m.g Eutrema salsugineum HOM05D005452 ORTHO05D006618 1.6e-20 104.4 89 64.0
Phvul.008G048300 Phaseolus vulgaris HOM05D005452 ORTHO05D006618 2.0e-20 104.0 79 69.6
HPP92_017381 Vanilla planifolia HOM05D005452 ORTHO05D006618 2.0e-20 104.0 77 68.8
Aqoxy3G01257 Aquilegia oxysepala HOM05D005452 ORTHO05D006618 2.7e-20 103.6 99 60.6
Carub.0005s0428 Capsella rubella HOM05D005452 ORTHO05D006618 2.7e-20 103.6 107 56.1
Gohir.D05G226100 Gossypium hirsutum HOM05D005452 ORTHO05D006618 2.7e-20 103.6 74 77.0
AL5G15130 Arabidopsis lyrata HOM05D005452 ORTHO05D006618 3.5e-20 103.2 79 68.4
CDE10G1265 Ceratophyllum demersum HOM05D005452 ORTHO05D006618 3.5e-20 103.2 77 66.2
Sabra10G0020400 Salix brachista HOM05D004112 ORTHO05D004739 3.5e-20 103.2 96 62.5
BolC2t11364H Brassica oleracea HOM05D005452 ORTHO05D006618 4.5e-20 102.8 89 65.2
Cc01_g03580 Coffea canephora HOM05D005452 ORTHO05D006618 7.7e-20 102.1 89 64.0
CARHR147370 Cardamine hirsuta HOM05D005452 ORTHO05D006618 1.0e-19 101.7 90 63.3
Lj5A831G11 Lonicera japonica HOM05D002180 ORTHO05D001339 2.3e-19 100.5 84 63.1
Lj4g0021307 Lotus japonicus HOM05D005452 ORTHO05D006618 2.3e-19 100.5 72 76.4
PSO017G6805 Papaver somniferum HOM05D005452 ORTHO05D006618 2.9e-19 100.1 84 63.1
PSO210G2974 Papaver somniferum HOM05D005452 ORTHO05D006618 3.8e-19 99.8 80 65.0
Potri.010G048600 Populus trichocarpa HOM05D005452 ORTHO05D006618 8.6e-19 98.6 78 66.7
MD04G1159200 Malus domestica HOM05D005452 ORTHO05D006618 2.5e-18 97.1 81 66.7
vmacro01118 Vaccinium macrocarpon HOM05D005452 ORTHO05D006618 3.2e-18 96.7 82 63.4
MD12G1125700 Malus domestica HOM05D005452 ORTHO05D006618 1.2e-17 94.7 81 65.4
SalBow6G5661 Salvia bowleyana HOM05D005452 ORTHO05D006618 2.8e-17 93.6 70 70.0
SEGI_27388 Sequoiadendron giganteum HOM05D005452 ORTHO05D006618 4.0e-16 89.7 80 63.8
MBI15_g11303_MAGBIO Magnolia biondii HOM05D005452 ORTHO05D006618 5.2e-16 89.4 92 58.7
SEGI_39778 Sequoiadendron giganteum HOM05D005452 ORTHO05D006618 1.2e-15 88.2 103 53.4
Zm00001eb217020 Zea mays HOM05D005452 ORTHO05D006618 1.2e-15 88.2 79 59.5
Lj5A794T36 Lonicera japonica HOM05D002180 ORTHO05D001339 1.5e-15 87.8 104 51.0
Zm00001eb053730 Zea mays HOM05D005452 ORTHO05D006618 7.5e-15 85.5 79 58.2
Os03g0694700 Oryza sativa ssp. japonica HOM05D005452 ORTHO05D006618 3.7e-14 83.2 80 63.8
Lj1A354T50 Lonicera japonica HOM05D002180 ORTHO05D001339 4.9e-14 82.8 176 36.4
Lj7C629T7 Lonicera japonica HOM05D002180 ORTHO05D001339 1.1e-13 81.6 176 35.8
Lj6C448T6 Lonicera japonica HOM05D002180 ORTHO05D001339 1.4e-13 81.3 176 35.8
Zm00001eb217070 Zea mays HOM05D000876 ORTHO05D000285 6.1e-09 65.9 121 41.3
Medtr3g450960 Medicago truncatula HOM05D005452 ORTHO05D006618 1.4e-08 64.7 56 66.1
unitig_8.g2920 Utricularia gibba HOM05D005452 ORTHO05D006618 1.4e-08 64.7 52 69.2
Nn1g09342 Nelumbo nucifera HOM05D005452 ORTHO05D006618 1.8e-08 64.3 77 50.6
SalBow6G2133 Salvia bowleyana HOM05D009895 ORTHO05D006618 4.0e-08 63.2 65 50.8
SalBow6G0426 Salvia bowleyana HOM05D005452 ORTHO05D006618 2.0e-07 60.8 44 72.7
Lj6P507T20 Lonicera japonica HOM05D002180 ORTHO05D001339 9.8e-07 58.5 84 41.7
Lj9C568G3 Lonicera japonica HOM05D004478 ORTHO05D007440 1.7e-06 57.8 83 42.2
Lj8A607T64 Lonicera japonica HOM05D002180 ORTHO05D001339 2.9e-06 57.0 72 47.2
Lj8C523G12 Lonicera japonica HOM05D002180 ORTHO05D001339 2.9e-06 57.0 222 29.7


User provided reference genes

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