Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3C423T20 Lonicera japonica HOM05D002865 ORTHO05D003289 8.1e-69 263.5 120 100.0
Lj3C423T18 Lonicera japonica HOM05D002865 ORTHO05D003289 2.6e-35 152.1 95 75.8
Lj3C422T5 Lonicera japonica HOM05D002865 ORTHO05D003289 3.2e-33 145.2 89 82.0
Cc06_g06610 Coffea canephora HOM05D002865 ORTHO05D003289 7.0e-28 127.5 95 64.2
CiPaw.10G018000 Carya illinoinensis HOM05D002865 ORTHO05D003289 1.2e-27 126.7 95 64.2
Potri.006G202900 Populus trichocarpa HOM05D002865 ORTHO05D003289 3.5e-27 125.2 100 61.0
COL.COLO4_29569 Corchorus olitorius HOM05D002865 ORTHO05D003289 7.7e-27 124.0 95 63.2
Lj3A423G40 Lonicera japonica HOM05D002865 ORTHO05D003289 1.0e-26 123.6 86 74.4
Ciclev10011740m.g Citrus clementina HOM05D002865 ORTHO05D003289 1.3e-26 123.2 95 64.2
Thecc.05G105100 Theobroma cacao HOM05D002865 ORTHO05D003289 2.2e-26 122.5 95 61.1
Duzib093G2181 Durio zibethinus HOM05D002865 ORTHO05D003289 3.8e-26 121.7 95 61.1
Hma1.2p1_0079F.1_g041773 Hydrangea macrophylla HOM05D002865 ORTHO05D003289 3.8e-26 121.7 95 57.9
Hma1.2p1_0079F.1_g041790 Hydrangea macrophylla HOM05D002865 ORTHO05D003289 3.8e-26 121.7 95 57.9
Gohir.A04G057700 Gossypium hirsutum HOM05D002865 ORTHO05D003289 6.5e-26 120.9 95 60.0
Gohir.D04G091500 Gossypium hirsutum HOM05D002865 ORTHO05D003289 6.5e-26 120.9 95 60.0
Gorai.009G396800 Gossypium raimondii HOM05D002865 ORTHO05D003289 6.5e-26 120.9 95 60.0
Prupe.7G094200 Prunus persica HOM05D002865 ORTHO05D003289 6.5e-26 120.9 95 61.1
MD14G1048100 Malus domestica HOM05D002865 ORTHO05D003289 1.1e-25 120.2 95 58.9
QL07p036606 Quercus lobata HOM05D002865 ORTHO05D003289 1.1e-25 120.2 95 61.1
Atru.chr8.1349 Acer truncatum HOM05D002865 ORTHO05D003289 1.9e-25 119.4 95 62.1
Lalb_Chr01g0017861 Lupinus albus HOM05D002865 ORTHO05D003289 2.5e-25 119.0 95 58.9
CANSAT64G2938 Cannabis sativa HOM05D002865 ORTHO05D003289 3.2e-25 118.6 95 61.1
MD12G1049200 Malus domestica HOM05D002865 ORTHO05D003289 4.2e-25 118.2 95 57.9
GSVIVG01011145001 Vitis vinifera HOM05D002865 ORTHO05D003289 4.2e-25 118.2 95 60.0
Dinv12341 Davidia involucrata HOM05D002865 ORTHO05D003289 5.5e-25 117.9 95 60.0
FvH4_6g20360 Fragaria vesca HOM05D002865 ORTHO05D003289 5.5e-25 117.9 94 62.8
FAN05G2473 Fragaria x ananassa HOM05D002865 ORTHO05D003289 5.5e-25 117.9 94 62.8
FAN05G2646 Fragaria x ananassa HOM05D002865 ORTHO05D003289 5.5e-25 117.9 94 62.8
FAN09G3527 Fragaria x ananassa HOM05D002865 ORTHO05D003289 5.5e-25 117.9 94 62.8
FAN14G2618 Fragaria x ananassa HOM05D002865 ORTHO05D003289 5.5e-25 117.9 94 62.8
Manes.09G045700 Manihot esculenta HOM05D002865 ORTHO05D003289 5.5e-25 117.9 95 60.0
Haze_20179 Corylus avellana HOM05D002865 ORTHO05D003289 7.2e-25 117.5 95 58.9
Sabra06G0156000 Salix brachista HOM05D002865 ORTHO05D003289 7.2e-25 117.5 99 58.6
Haze_20175 Corylus avellana HOM05D002865 ORTHO05D003289 1.2e-24 116.7 95 58.9
ECA233G4705 Erigeron canadensis HOM05D002865 ORTHO05D003289 1.6e-24 116.3 95 58.9
VMungo1383G3695 Vigna mungo HOM05D002865 ORTHO05D003289 1.6e-24 116.3 95 55.8
FAN02G0504 Fragaria x ananassa HOM05D002865 ORTHO05D003289 2.7e-24 115.5 94 61.7
Cpa.g.sc104.26 Carica papaya HOM05D002865 ORTHO05D003289 4.7e-24 114.8 94 60.6
Glyma.19G199400 Glycine max HOM05D002865 ORTHO05D003289 4.7e-24 114.8 95 55.8
arahy.Tifrunner.gnm1.ann1.0FNG65 Arachis hypogaea HOM05D002865 ORTHO05D003289 1.0e-23 113.6 95 58.9
MBI12_g10424_MAGBIO Magnolia biondii HOM05D002865 ORTHO05D003289 1.0e-23 113.6 95 57.9
Glyma.03G202400 Glycine max HOM05D002865 ORTHO05D003289 1.8e-23 112.8 95 54.7
TWI74G0042 Tripterygium wilfordii HOM05D002865 ORTHO05D003289 1.8e-23 112.8 95 56.8
Eucgr.A02587 Eucalyptus grandis HOM05D002865 ORTHO05D003289 2.3e-23 112.5 94 60.6
Sed0026465 Sechium edule HOM05D002865 ORTHO05D003289 2.3e-23 112.5 94 59.6
Actinidia37749 Actinidia chinensis HOM05D002865 ORTHO05D003289 3.0e-23 112.1 103 53.4
RcHm_v2.0_Chr3g0475971 Rosa chinensis HOM05D002865 ORTHO05D003289 3.0e-23 112.1 94 60.6
TAR369G0763 Trochodendron aralioides HOM05D002865 ORTHO05D003289 4.0e-23 111.7 95 58.9
CSS0009458 Camellia sinensis var. sinensis HOM05D002865 ORTHO05D003289 8.8e-23 110.5 95 55.8
AUR62030731 Chenopodium quinoa HOM05D002865 ORTHO05D003289 8.8e-23 110.5 95 57.9
Sc01g0005360 Simmondsia chinensis HOM05D002865 ORTHO05D003289 8.8e-23 110.5 98 54.1
Actinidia03886 Actinidia chinensis HOM05D002865 ORTHO05D003289 1.2e-22 110.2 103 54.4
Actinidia03995 Actinidia chinensis HOM05D002865 ORTHO05D003289 1.2e-22 110.2 103 54.4
CAN.G574.4 Capsicum annuum HOM05D002865 ORTHO05D003289 2.6e-22 109.0 99 56.6
Nitab4.5_0000077g0070 Nicotiana tabacum HOM05D002865 ORTHO05D003289 2.6e-22 109.0 99 54.5
Nitab4.5_0000384g0010 Nicotiana tabacum HOM05D002865 ORTHO05D003289 2.6e-22 109.0 99 54.5
MSTRG.26606 Avicennia marina HOM05D002865 ORTHO05D003289 3.3e-22 108.6 97 59.8
EL10Ac5g12973 Beta vulgaris HOM05D002865 ORTHO05D003289 3.3e-22 108.6 94 56.4
AUR62036371 Chenopodium quinoa HOM05D002865 ORTHO05D003289 3.3e-22 108.6 94 56.4
Lj1g0018446 Lotus japonicus HOM05D002865 ORTHO05D003289 3.3e-22 108.6 94 56.4
Nn6g34682 Nelumbo nucifera HOM05D002865 ORTHO05D003289 3.3e-22 108.6 95 57.9
Peaxi162Scf00910g00220 Petunia axillaris HOM05D002865 ORTHO05D003289 4.4e-22 108.2 99 55.6
PGSC0003DMG400021355 Solanum tuberosum HOM05D002865 ORTHO05D003289 4.4e-22 108.2 99 56.6
CsaV3_4G013470 Cucumis sativus L. HOM05D002865 ORTHO05D003289 5.7e-22 107.8 94 57.4
HanXRQChr02g0053241 Helianthus annuus HOM05D002865 ORTHO05D003289 5.7e-22 107.8 94 56.4
Medtr7g106330 Medicago truncatula HOM05D002865 ORTHO05D003289 5.7e-22 107.8 95 54.7
MELO3C008785.2 Cucumis melo HOM05D002865 ORTHO05D003289 7.5e-22 107.5 94 56.4
Hund14962 Selenicereus undatus HOM05D002865 ORTHO05D003289 7.5e-22 107.5 94 54.3
PSO384G1255 Papaver somniferum HOM05D002865 ORTHO05D003289 9.7e-22 107.1 95 55.8
ClCG04G005150 Citrullus lanatus HOM05D002865 ORTHO05D003289 1.3e-21 106.7 94 57.4
THA.LOC104816643 Tarenaya hassleriana HOM05D002865 ORTHO05D003289 1.3e-21 106.7 94 54.3
HPP92_000996 Vanilla planifolia HOM05D002865 ORTHO05D003289 1.3e-21 106.7 94 57.4
Rhsim10G0140600 Rhododendron simsii HOM05D002865 ORTHO05D003289 2.2e-21 105.9 95 53.7
PSO339G0847 Papaver somniferum HOM05D002865 ORTHO05D003289 2.8e-21 105.5 94 54.3
SEGI_32450 Sequoiadendron giganteum HOM05D002865 ORTHO05D003289 2.8e-21 105.5 95 53.7
Solyc01g007060.3 Solanum lycopersicum HOM05D002865 ORTHO05D003289 2.8e-21 105.5 99 55.6
Sopen01g003040 Solanum pennellii HOM05D002865 ORTHO05D003289 2.8e-21 105.5 99 55.6
Ca_09060_v3 Cicer arietinum L. HOM05D002865 ORTHO05D003289 3.7e-21 105.1 95 53.7
Lsat_1_v5_gn_6_33500 Lactuca sativa HOM05D002865 ORTHO05D003289 4.8e-21 104.8 94 56.4
Aqoxy1G00651 Aquilegia oxysepala HOM05D002865 ORTHO05D003289 1.4e-20 103.2 94 55.3
Sp3g04550 Schrenkiella parvula HOM05D002865 ORTHO05D003289 1.4e-20 103.2 94 54.3
CARHR080120 Cardamine hirsuta HOM05D002865 ORTHO05D003289 4.1e-20 101.7 95 53.7
Thhalv10020747m.g Eutrema salsugineum HOM05D002865 ORTHO05D003289 4.1e-20 101.7 94 53.2
Aa31LG5G16090 Aethionema arabicum HOM05D002865 ORTHO05D003289 5.3e-20 101.3 94 53.2
vmacro12836 Vaccinium macrocarpon HOM05D002865 ORTHO05D003289 7.0e-20 100.9 95 51.6
AT3G05675 Arabidopsis thaliana HOM05D002865 ORTHO05D003289 1.6e-19 99.8 94 53.2
A03p34260 Brassica napus HOM05D004426 ORTHO05D005417 1.6e-19 99.8 94 52.1
Carub.0003s0501 Capsella rubella HOM05D002865 ORTHO05D003289 1.6e-19 99.8 94 53.2
Migut.L01829 Erythranthe guttata HOM05D002865 ORTHO05D003289 1.6e-19 99.8 97 52.6
BcaB04g19249 Brassica carinata HOM05D000005 ORTHO05D000449 2.7e-19 99.0 94 51.1
Psat3g028440 Pisum sativum HOM05D002865 ORTHO05D003289 2.7e-19 99.0 95 50.5
AL3G16330 Arabidopsis lyrata HOM05D002865 ORTHO05D003289 1.3e-18 96.7 94 52.1
Pp3c24_16440 Physcomitrium patens HOM05D002865 ORTHO05D003289 2.2e-18 95.9 95 49.5
Pp3c8_21540 Physcomitrium patens HOM05D002865 ORTHO05D003289 2.2e-18 95.9 95 48.4
Pp3c23_20080 Physcomitrium patens HOM05D002865 ORTHO05D003289 5.0e-18 94.7 95 49.5
Mapoly0850s0001 Marchantia polymorpha HOM05D002865 ORTHO05D003289 1.1e-17 93.6 94 47.9
unitig_8.g4977 Utricularia gibba HOM05D002865 ORTHO05D003289 1.1e-17 93.6 95 51.6
SGA_v2.0_scaffold35G14017 Striga asiatica HOM05D002865 ORTHO05D003289 1.9e-17 92.8 94 48.9
Pp3c20_1690 Physcomitrium patens HOM05D002865 ORTHO05D003289 4.2e-17 91.7 95 46.3
BraA03t12600Z Brassica rapa HOM05D004426 ORTHO05D005417 7.2e-17 90.9 98 48.0
C03p41680 Brassica napus HOM05D004426 ORTHO05D005417 9.4e-17 90.5 98 48.0
BolC3t16448H Brassica oleracea HOM05D002865 ORTHO05D003289 9.4e-17 90.5 98 48.0
Phvul.001G195900 Phaseolus vulgaris HOM05D002865 ORTHO05D003289 1.2e-16 90.1 95 47.4
Lj3A423T50 Lonicera japonica HOM05D002865 ORTHO05D003289 8.0e-16 87.4 95 51.6
Zm00001eb320450 Zea mays HOM05D002865 ORTHO05D003289 1.5e-14 83.2 94 50.0
Os07g0668800 Oryza sativa ssp. japonica HOM05D002865 ORTHO05D003289 2.0e-14 82.8 94 47.9
Lj3C423T6 Lonicera japonica HOM05D002865 ORTHO05D003289 4.4e-14 81.6 52 76.9
Cfa020035 Carpinus fangiana HOM05D002865 ORTHO05D003289 1.1e-12 77.0 54 68.5
CDE02G3339 Ceratophyllum demersum HOM05D002865 ORTHO05D003289 5.4e-12 74.7 97 43.3
MBI04_g36400_MAGBIO Magnolia biondii HOM05D002865 ORTHO05D003289 5.4e-12 74.7 91 39.6
Aqoxy7G00042 Aquilegia oxysepala HOM05D002865 ORTHO05D003289 7.0e-12 74.3 103 35.9
TAR374G1250 Trochodendron aralioides HOM05D002865 ORTHO05D003289 4.5e-11 71.6 86 40.7
Oeu042076.1 Olea europaea HOM05D002865 ORTHO05D003289 1.3e-10 70.1 51 70.6
Ah.07g197790 Amaranthus hybridus HOM05D002865 ORTHO05D003289 6.6e-10 67.8 83 41.0
ATR0757G155 Amborella trichopoda HOM05D002865 ORTHO05D003289 1.9e-09 66.2 93 43.0
AUR62007031 Chenopodium quinoa HOM05D002865 ORTHO05D003289 2.5e-09 65.9 83 39.8
Potri.016G069566 Populus trichocarpa HOM05D002865 ORTHO05D003289 2.5e-09 65.9 61 52.5
Sc01g0010530 Simmondsia chinensis HOM05D002865 ORTHO05D003289 2.5e-09 65.9 84 39.3
GSVIVG01019622001 Vitis vinifera HOM05D002865 ORTHO05D003289 2.5e-09 65.9 87 36.8
CSS0036805 Camellia sinensis var. sinensis HOM05D002865 ORTHO05D003289 7.2e-09 64.3 81 39.5
AUR62019895 Chenopodium quinoa HOM05D002865 ORTHO05D003289 9.5e-09 63.9 82 39.0
Cc08_g16580 Coffea canephora HOM05D002865 ORTHO05D003289 1.6e-08 63.2 85 35.3
HanXRQChr17g0534361 Helianthus annuus HOM05D002865 ORTHO05D003289 2.1e-08 62.8 82 36.6
Rhsim02G0250100 Rhododendron simsii HOM05D002865 ORTHO05D003289 2.8e-08 62.4 79 34.2
Dinv03435 Davidia involucrata HOM05D002865 ORTHO05D003289 3.6e-08 62.0 86 36.0
Hma1.2p1_0456F.1_g156480 Hydrangea macrophylla HOM05D002865 ORTHO05D003289 3.6e-08 62.0 83 36.1
Manes.10G065100 Manihot esculenta HOM05D002865 ORTHO05D003289 3.6e-08 62.0 86 36.0
EL10Ac5g12463 Beta vulgaris HOM05D002865 ORTHO05D003289 6.1e-08 61.2 87 35.6
Oeu013551.1 Olea europaea HOM05D002865 ORTHO05D003289 8.0e-08 60.8 81 37.0
ATR0772G218 Amborella trichopoda HOM05D002865 ORTHO05D003289 1.0e-07 60.5 60 48.3
TPR.G31298 Trifolium pratense HOM05D002865 ORTHO05D003289 1.0e-07 60.5 56 48.2
RcHm_v2.0_Chr7g0186491 Rosa chinensis HOM05D002865 ORTHO05D003289 1.4e-07 60.1 86 34.9
Atru.chr9.1914 Acer truncatum HOM05D002865 ORTHO05D003289 2.3e-07 59.3 78 37.2
Haze_09131 Corylus avellana HOM05D002865 ORTHO05D003289 3.0e-07 58.9 81 35.8
CiPaw.12G079100 Carya illinoinensis HOM05D002865 ORTHO05D003289 4.0e-07 58.5 86 36.0
Potri.001G086100 Populus trichocarpa HOM05D002865 ORTHO05D003289 4.0e-07 58.5 86 34.9
Ciclev10020226m.g Citrus clementina HOM05D002865 ORTHO05D003289 5.2e-07 58.2 81 37.0
ECA246G1766 Erigeron canadensis HOM05D002865 ORTHO05D003289 5.2e-07 58.2 81 34.6
Sabra01G0062400 Salix brachista HOM05D002865 ORTHO05D003289 5.2e-07 58.2 86 34.9
CANSAT21G1641 Cannabis sativa HOM05D002865 ORTHO05D003289 6.8e-07 57.8 83 32.5
FvH4_5g11380 Fragaria vesca HOM05D002865 ORTHO05D003289 6.8e-07 57.8 83 34.9
FAN18G0892 Fragaria x ananassa HOM05D002865 ORTHO05D003289 6.8e-07 57.8 83 34.9
Gohir.A12G238800 Gossypium hirsutum HOM05D002865 ORTHO05D003289 2.0e-06 56.2 79 32.9
Prupe.5G127000 Prunus persica HOM05D002865 ORTHO05D003289 2.0e-06 56.2 85 32.9
FvH4_4g07840 Fragaria vesca HOM05D002865 ORTHO05D003289 2.6e-06 55.8 83 34.9
FAN12G2865 Fragaria x ananassa HOM05D002865 ORTHO05D003289 2.6e-06 55.8 83 34.9
FAN22G2270 Fragaria x ananassa HOM05D002865 ORTHO05D003289 2.6e-06 55.8 83 33.7
Gohir.D12G239900 Gossypium hirsutum HOM05D002865 ORTHO05D003289 2.6e-06 55.8 84 32.1
Gorai.008G257000 Gossypium raimondii HOM05D002865 ORTHO05D003289 2.6e-06 55.8 84 32.1
DCAR_006495 Daucus carota HOM05D002865 ORTHO05D003289 3.4e-06 55.5 81 34.6
Eucgr.D01699 Eucalyptus grandis HOM05D002865 ORTHO05D003289 3.4e-06 55.5 74 35.1
FAN07G0927 Fragaria x ananassa HOM05D002865 ORTHO05D003289 3.4e-06 55.5 83 33.7
Duzib205G0689 Durio zibethinus HOM05D002865 ORTHO05D003289 4.4e-06 55.1 86 33.7
COL.COLO4_10768 Corchorus olitorius HOM05D002865 ORTHO05D003289 5.7e-06 54.7 88 34.1
FAN17G1400 Fragaria x ananassa HOM05D002865 ORTHO05D003289 5.7e-06 54.7 83 33.7
MD14G1135500 Malus domestica HOM05D002865 ORTHO05D003289 5.7e-06 54.7 85 32.9
Thecc.03G224100 Theobroma cacao HOM05D002865 ORTHO05D003289 5.7e-06 54.7 81 34.6
Duzib084G0225 Durio zibethinus HOM05D002865 ORTHO05D003289 7.5e-06 54.3 86 33.7


User provided reference genes

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