Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3C404T0 Lonicera japonica HOM05D004482 ORTHO05D005212 8.5e-194 680.2 364 100.0
Lj3A407G37 Lonicera japonica HOM05D004482 ORTHO05D005212 2.4e-188 662.1 375 96.5
Cc03_g07940 Coffea canephora HOM05D004482 ORTHO05D005212 9.2e-140 500.7 365 75.6
Hma1.2p1_0187F.1_g082340 Hydrangea macrophylla HOM05D004482 ORTHO05D005212 3.0e-138 495.7 385 73.8
Oeu013809.1 Olea europaea HOM05D004482 ORTHO05D005212 9.8e-134 480.7 375 70.7
Peaxi162Scf00753g00331 Petunia axillaris HOM05D004482 ORTHO05D005212 2.2e-133 479.6 344 74.4
Actinidia11419 Actinidia chinensis HOM05D004482 ORTHO05D005212 3.7e-133 478.8 353 74.2
ECA233G3015 Erigeron canadensis HOM05D004482 ORTHO05D005212 3.7e-133 478.8 341 76.0
Sopen09g034910 Solanum pennellii HOM05D004482 ORTHO05D005212 1.4e-132 476.9 363 71.6
Solyc09g092030.4 Solanum lycopersicum HOM05D004482 ORTHO05D005212 1.6e-131 473.4 363 71.6
SGA_v2.0_scaffold31G12588 Striga asiatica HOM05D004482 ORTHO05D005212 3.9e-130 468.8 358 70.1
CAN.G1333.13 Capsicum annuum HOM05D004482 ORTHO05D005212 1.1e-129 467.2 353 72.2
Migut.N00400 Erythranthe guttata HOM05D004482 ORTHO05D005212 1.9e-129 466.5 358 69.8
MSTRG.24610 Avicennia marina HOM05D004482 ORTHO05D005212 5.6e-129 464.9 364 69.8
GSVIVG01020907001 Vitis vinifera HOM05D004482 ORTHO05D005212 7.3e-129 464.5 343 74.6
COL.COLO4_20166 Corchorus olitorius HOM05D004482 ORTHO05D005212 9.5e-129 464.2 338 74.9
Ciclev10005271m.g Citrus clementina HOM05D004482 ORTHO05D005212 2.1e-128 463.0 341 72.7
Manes.15G054600 Manihot esculenta HOM05D004482 ORTHO05D005212 2.8e-128 462.6 364 70.3
HanXRQChr02g0059021 Helianthus annuus HOM05D004482 ORTHO05D005212 6.2e-128 461.5 362 69.1
Atru.chr4.1674 Acer truncatum HOM05D004482 ORTHO05D005212 5.2e-127 458.4 365 69.3
HanXRQChr16g0497991 Helianthus annuus HOM05D004482 ORTHO05D005212 2.0e-126 456.4 345 70.7
Thecc.04G200900 Theobroma cacao HOM05D004482 ORTHO05D005212 3.4e-126 455.7 340 72.6
Peaxi162Scf00047g00420 Petunia axillaris HOM05D004482 ORTHO05D005212 2.2e-125 453.0 418 62.0
Rhsim02G0059000 Rhododendron simsii HOM05D004482 ORTHO05D005212 3.7e-125 452.2 411 63.5
Gorai.005G031400 Gossypium raimondii HOM05D004482 ORTHO05D005212 1.1e-124 450.7 341 71.6
Prupe.1G010300 Prunus persica HOM05D004482 ORTHO05D005212 3.2e-124 449.1 364 67.9
CsaV3_2G011600 Cucumis sativus L. HOM05D004482 ORTHO05D005212 4.1e-124 448.7 362 68.5
Gohir.D02G025500 Gossypium hirsutum HOM05D004482 ORTHO05D005212 5.4e-124 448.4 341 71.6
Cpa.g.sc443.1 Carica papaya HOM05D004482 ORTHO05D005212 7.1e-124 448.0 342 71.3
MELO3C020442.2 Cucumis melo HOM05D004482 ORTHO05D005212 1.2e-123 447.2 363 68.3
FAN12G3502 Fragaria x ananassa HOM05D004482 ORTHO05D005212 1.6e-123 446.8 345 70.4
RcHm_v2.0_Chr4g0414711 Rosa chinensis HOM05D004482 ORTHO05D005212 7.8e-123 444.5 364 66.8
Gohir.A02G021300 Gossypium hirsutum HOM05D004482 ORTHO05D005212 1.3e-122 443.7 341 70.4
Cfa014938 Carpinus fangiana HOM05D004482 ORTHO05D005212 3.0e-122 442.6 364 68.1
FvH4_4g13790 Fragaria vesca HOM05D004482 ORTHO05D005212 5.1e-122 441.8 342 70.2
MD00G1113200 Malus domestica HOM05D004482 ORTHO05D005212 5.1e-122 441.8 341 70.1
MD04G1010600 Malus domestica HOM05D004482 ORTHO05D005212 1.5e-121 440.3 341 69.5
CiPaw.01G120200 Carya illinoinensis HOM05D004482 ORTHO05D005212 3.3e-121 439.1 364 68.1
Lsat_1_v5_gn_6_61160 Lactuca sativa HOM05D004482 ORTHO05D005212 9.5e-121 437.6 343 70.0
TAR362G0107 Trochodendron aralioides HOM05D004482 ORTHO05D005212 2.8e-120 436.0 362 67.4
FAN17G0447 Fragaria x ananassa HOM05D004482 ORTHO05D005212 6.2e-120 434.9 369 66.1
Gohir.D02G027800 Gossypium hirsutum HOM05D004482 ORTHO05D005212 1.8e-119 433.3 341 69.8
Potri.017G056800 Populus trichocarpa HOM05D004482 ORTHO05D005212 2.0e-118 429.9 364 66.2
Duzib151G0803 Durio zibethinus HOM05D004482 ORTHO05D005212 3.4e-118 429.1 360 67.2
PGR083G2076 Punica granatum HOM05D004482 ORTHO05D005212 3.4e-118 429.1 347 68.9
ClCG06G007870 Citrullus lanatus HOM05D004482 ORTHO05D005212 1.3e-117 427.2 379 65.2
Sed0019182 Sechium edule HOM05D004482 ORTHO05D005212 1.9e-116 423.3 365 66.8
vmacro15546 Vaccinium macrocarpon HOM05D004482 ORTHO05D005212 2.7e-115 419.5 489 54.2
Lj4g0012954 Lotus japonicus HOM05D004482 ORTHO05D005212 7.8e-115 417.9 362 64.6
TPR.G11944 Trifolium pratense HOM05D004482 ORTHO05D005212 2.3e-114 416.4 339 67.3
Dinv27224 Davidia involucrata HOM05D004482 ORTHO05D005212 5.1e-114 415.2 283 79.9
Nitab4.5_0000401g0030 Nicotiana tabacum HOM05D004482 ORTHO05D005212 6.6e-114 414.8 316 72.8
Duzib212G0483 Durio zibethinus HOM05D004482 ORTHO05D005212 8.7e-114 414.5 342 67.0
Sed0016107 Sechium edule HOM05D004482 ORTHO05D005212 1.1e-113 414.1 366 64.2
PGSC0003DMG400026426 Solanum tuberosum HOM05D004482 ORTHO05D005212 1.6e-112 410.2 325 70.5
Lalb_Chr07g0186731 Lupinus albus HOM05D004482 ORTHO05D005212 2.8e-112 409.5 339 64.9
AUR62018590 Chenopodium quinoa HOM05D004482 ORTHO05D005212 1.4e-111 407.1 341 62.8
Glyma.05G154100 Glycine max HOM05D004482 ORTHO05D005212 1.8e-111 406.8 362 63.5
unitig_8.g4998 Utricularia gibba HOM05D004482 ORTHO05D005212 1.8e-111 406.8 344 64.5
TWI73G1291 Tripterygium wilfordii HOM05D004482 ORTHO05D005212 2.4e-111 406.4 362 62.2
Nitab4.5_0006210g0070 Nicotiana tabacum HOM05D004482 ORTHO05D005212 1.2e-110 404.1 325 70.2
Psat7g074240 Pisum sativum HOM05D004482 ORTHO05D005212 1.2e-110 404.1 339 65.2
Medtr8g085350 Medicago truncatula HOM05D004482 ORTHO05D005212 4.4e-110 402.1 339 64.9
FAN22G1791 Fragaria x ananassa HOM05D004482 ORTHO05D005212 5.8e-110 401.7 450 53.8
Glyma.08G111900 Glycine max HOM05D004482 ORTHO05D005212 9.9e-110 401.0 339 64.6
Gohir.D02G027400 Gossypium hirsutum HOM05D004482 ORTHO05D005212 6.4e-109 398.3 341 65.1
arahy.Tifrunner.gnm1.ann1.ENCW2M Arachis hypogaea HOM05D004482 ORTHO05D005212 7.1e-108 394.8 367 60.8
Hund18995 Selenicereus undatus HOM05D004482 ORTHO05D005212 7.1e-108 394.8 361 60.1
Cpa.g.sc173.9 Carica papaya HOM05D004482 ORTHO05D005212 9.3e-108 394.4 298 71.1
CANSAT78G1841 Cannabis sativa HOM05D004482 ORTHO05D005212 1.6e-107 393.7 365 61.6
Sp4g15100 Schrenkiella parvula HOM05D004482 ORTHO05D005212 1.6e-107 393.7 346 61.6
Carub.0004s1412 Capsella rubella HOM05D004482 ORTHO05D005212 3.5e-107 392.5 342 61.7
EL10Ac4g09020 Beta vulgaris HOM05D004482 ORTHO05D005212 4.6e-107 392.1 341 61.0
BraA04t18031Z Brassica rapa HOM05D004482 ORTHO05D005212 1.3e-106 390.6 358 58.7
QL06p025411 Quercus lobata HOM05D004482 ORTHO05D005212 1.7e-106 390.2 310 69.0
Ah.11g041390 Amaranthus hybridus HOM05D004482 ORTHO05D005212 2.3e-106 389.8 340 60.3
A04p25280 Brassica napus HOM05D004482 ORTHO05D005212 2.3e-106 389.8 361 59.6
AL4G28200 Arabidopsis lyrata HOM05D004482 ORTHO05D005212 5.1e-106 388.7 341 60.4
BcaC02g07886 Brassica carinata HOM05D004482 ORTHO05D005212 6.6e-106 388.3 343 60.3
BolC4t27707H Brassica oleracea HOM05D004482 ORTHO05D005212 1.5e-105 387.1 358 58.1
A03p18310 Brassica napus HOM05D004482 ORTHO05D005212 2.5e-105 386.3 364 59.6
BolC3t14519H Brassica oleracea HOM05D004482 ORTHO05D005212 3.3e-105 386.0 364 59.3
C03p21360 Brassica napus HOM05D004482 ORTHO05D005212 4.3e-105 385.6 364 59.6
AT2G32760 Arabidopsis thaliana HOM05D004482 ORTHO05D005212 7.3e-105 384.8 341 60.4
AUR62020829 Chenopodium quinoa HOM05D004482 ORTHO05D005212 9.6e-105 384.4 358 58.7
THA.LOC104826120 Tarenaya hassleriana HOM05D004482 ORTHO05D005212 6.2e-104 381.7 357 58.8
BraA03t11091Z Brassica rapa HOM05D004482 ORTHO05D005212 8.1e-104 381.3 364 59.1
Nn3g19571 Nelumbo nucifera HOM05D004482 ORTHO05D005212 5.3e-103 378.6 359 60.7
Aa31LG5G4410 Aethionema arabicum HOM05D004482 ORTHO05D005212 9.0e-103 377.9 397 54.4
Dinv38218 Davidia involucrata HOM05D004482 ORTHO05D005212 1.5e-102 377.1 272 78.7
Eucgr.H02773 Eucalyptus grandis HOM05D004482 ORTHO05D005212 5.8e-102 375.2 299 68.6
C04p62340 Brassica napus HOM05D000474 ORTHO05D005212 4.9e-101 372.1 364 56.3
Aqoxy2G00031 Aquilegia oxysepala HOM05D004482 ORTHO05D005212 1.9e-100 370.2 339 59.9
ATR1096G138 Amborella trichopoda HOM05D004482 ORTHO05D005212 1.2e-99 367.5 374 58.3
arahy.Tifrunner.gnm1.ann1.R808EC Arachis hypogaea HOM05D004482 ORTHO05D005212 2.1e-99 366.7 315 64.8
MBI19_g24734_MAGBIO Magnolia biondii HOM05D004482 ORTHO05D005212 2.7e-99 366.3 426 53.1
Gohir.A09G205700 Gossypium hirsutum HOM05D004482 ORTHO05D005212 3.5e-99 365.9 303 67.0
FAN07G1054 Fragaria x ananassa HOM05D004482 ORTHO05D005212 7.9e-99 364.8 330 63.0
Gorai.006G223000 Gossypium raimondii HOM05D004482 ORTHO05D005212 5.1e-98 362.1 312 65.4
BcaB06g28632 Brassica carinata HOM05D004482 ORTHO05D005212 7.4e-97 358.2 344 58.1
Gohir.D09G199300 Gossypium hirsutum HOM05D004482 ORTHO05D005212 7.4e-97 358.2 303 66.3
Ca_17968_v3 Cicer arietinum L. HOM05D004482 ORTHO05D005212 1.8e-95 353.6 303 66.3
Haze_11622 Corylus avellana HOM05D004482 ORTHO05D005212 1.8e-95 353.6 577 43.5
Nn3g19999 Nelumbo nucifera HOM05D004482 ORTHO05D005212 1.8e-95 353.6 337 60.2
PSO339G2282 Papaver somniferum HOM05D004482 ORTHO05D005212 9.0e-95 351.3 356 58.4
Lalb_Chr21g0313021 Lupinus albus HOM05D004482 ORTHO05D005212 1.3e-93 347.4 296 63.5
PSO384G1658 Papaver somniferum HOM05D004482 ORTHO05D005212 9.3e-92 341.3 355 57.2
Thhalv10016939m.g Eutrema salsugineum HOM05D004482 ORTHO05D005212 2.1e-91 340.1 298 62.1
CARHR126650 Cardamine hirsuta HOM05D004482 ORTHO05D005212 2.7e-91 339.7 298 61.4
HanXRQChr10g0277641 Helianthus annuus HOM05D004482 ORTHO05D005212 4.6e-91 339.0 308 63.3
Sc19g0007180 Simmondsia chinensis HOM05D004482 ORTHO05D005212 3.0e-90 336.3 272 66.2
Lsat_1_v5_gn_2_46161 Lactuca sativa HOM05D004482 ORTHO05D005212 6.7e-90 335.1 324 59.9
MBI19_g24366_MAGBIO Magnolia biondii HOM05D004482 ORTHO05D005212 4.3e-89 332.4 306 62.1
Phvul.003G290900 Phaseolus vulgaris HOM05D004482 ORTHO05D005212 8.2e-88 328.2 326 58.9
Oeu006195.1 Olea europaea HOM05D004482 ORTHO05D005212 2.6e-86 323.2 320 62.8
HPP92_017061 Vanilla planifolia HOM05D004482 ORTHO05D005212 4.5e-86 322.4 357 52.1
Gohir.D02G025900 Gossypium hirsutum HOM05D004482 ORTHO05D005212 2.5e-84 316.6 229 73.4
Os06g0715000 Oryza sativa ssp. japonica HOM05D004482 ORTHO05D005212 1.6e-80 303.9 344 50.0
SalBow3G0632 Salvia bowleyana HOM05D004482 ORTHO05D005212 7.7e-78 295.0 253 68.0
CDE08G1272 Ceratophyllum demersum HOM05D004482 ORTHO05D005212 5.0e-77 292.4 343 50.1
CDE09G1401 Ceratophyllum demersum HOM05D004482 ORTHO05D005212 1.0e-74 284.6 357 49.6
DCAR_001940 Daucus carota HOM05D004482 ORTHO05D005212 2.8e-72 276.6 337 51.0
BcaNung06790 Brassica carinata HOM05D004482 ORTHO05D005212 2.2e-69 266.9 273 57.1
Duzib212G1026 Durio zibethinus HOM05D004482 ORTHO05D005212 1.5e-60 237.7 166 72.9
DCAR_012443 Daucus carota HOM05D004482 ORTHO05D005212 4.7e-59 232.6 158 75.3
Oeu006194.1 Olea europaea HOM05D004482 ORTHO05D005212 3.0e-58 229.9 194 70.1
Peaxi162Scf61983g00004 Petunia axillaris HOM05D004482 ORTHO05D005212 1.1e-52 211.5 128 80.5
Zm00001eb405320 Zea mays HOM05D004482 ORTHO05D005212 1.5e-52 211.1 203 55.7
Gohir.D02G026860 Gossypium hirsutum HOM05D004482 ORTHO05D005212 5.5e-52 209.1 205 61.0
VMungo0251G0011 Vigna mungo HOM05D004482 ORTHO05D005212 2.1e-51 207.2 162 69.8
SEGI_24214 Sequoiadendron giganteum HOM05D004482 ORTHO05D005212 6.8e-50 202.2 228 53.5
Mapoly0173s0024 Marchantia polymorpha HOM05D004482 ORTHO05D005212 2.6e-49 200.3 375 37.6
AagrBONN_evm.TU.Sc2ySwM_228.2912 Anthoceros agrestis HOM05D004482 ORTHO05D005212 2.8e-48 196.8 323 39.3
Pp3c14_26480 Physcomitrium patens HOM05D004482 ORTHO05D005212 3.7e-48 196.4 345 36.8
ECA238G0855 Erigeron canadensis HOM05D000097 ORTHO05D000041 1.4e-47 194.5 175 62.9
Sabra17G0048500 Salix brachista HOM05D004482 ORTHO05D005212 2.3e-42 177.2 115 75.7
Sabra17G0050200 Salix brachista HOM05D004482 ORTHO05D005212 2.3e-42 177.2 115 75.7
Gohir.D02G025833 Gossypium hirsutum HOM05D004482 ORTHO05D005212 1.8e-39 167.5 114 72.8
SMO334G0086 Selaginella moellendorffii HOM05D004482 ORTHO05D005212 2.9e-37 160.2 328 36.3
Oeu008667.1 Olea europaea HOM05D004482 ORTHO05D005212 4.2e-36 156.4 104 74.0
Os05g0490500 Oryza sativa ssp. japonica HOM05D004482 ORTHO05D005212 5.5e-36 156.0 250 42.8
FAN16G2719 Fragaria x ananassa HOM05D004482 ORTHO05D005212 7.5e-33 145.6 117 70.1
DCAR_012442 Daucus carota HOM05D004482 ORTHO05D005212 2.1e-27 127.5 106 67.0
VMungo0251G0179 Vigna mungo HOM05D004482 ORTHO05D005212 5.8e-25 119.4 138 53.6
BcaB01g01629 Brassica carinata HOM05D004482 ORTHO05D005212 7.5e-25 119.0 251 38.2
CBR_g30986 Chara braunii HOM05D000019 ORTHO05D000048 1.9e-23 114.4 176 42.0
TWI09G0568 Tripterygium wilfordii HOM05D004482 ORTHO05D005212 2.4e-23 114.0 136 50.7
MCO09G655 Micromonas commoda HOM05D004482 ORTHO05D005212 3.9e-21 106.7 294 32.3
CDE09G0489 Ceratophyllum demersum HOM05D004482 ORTHO05D005212 3.6e-19 100.1 131 45.8
EL10Ac4g09026 Beta vulgaris HOM05D004482 ORTHO05D005212 1.9e-15 87.8 87 55.2
Zm00001eb291290 Zea mays HOM05D004482 ORTHO05D005212 1.9e-12 77.8 235 30.6
Actinidia39240 Actinidia chinensis HOM05D000280 ORTHO05D000632 4.4e-09 66.6 60 63.3
Cpa.g.sc173.8 Carica papaya HOM05D004482 ORTHO05D005212 2.2e-08 64.3 55 61.8
BcaC08g43547 Brassica carinata HOM05D004482 ORTHO05D005212 5.4e-07 59.7 70 47.1
BolC4t26969H Brassica oleracea HOM05D004482 ORTHO05D005212 9.2e-07 58.9 64 50.0
C04p54180 Brassica napus HOM05D004482 ORTHO05D005212 1.6e-06 58.2 64 50.0
BcaC02g08439 Brassica carinata HOM05D004482 ORTHO05D005212 2.1e-06 57.8 70 47.1
C08p00860 Brassica napus HOM05D004482 ORTHO05D005212 4.6e-06 56.6 65 53.8


User provided reference genes

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