Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3A380G19 Lonicera japonica HOM05D003040 ORTHO05D003443 1.2e-42 176.0 84 100.0
Lj3C387T5 Lonicera japonica HOM05D003040 ORTHO05D003443 1.2e-42 176.0 84 100.0
TAR636G3649 Trochodendron aralioides HOM05D003040 ORTHO05D003443 7.1e-19 97.1 69 75.4
CSS0033054 Camellia sinensis var. sinensis HOM05D003040 ORTHO05D003443 2.1e-18 95.5 82 65.9
CiPaw.01G109100 Carya illinoinensis HOM05D003040 ORTHO05D003443 1.0e-17 93.2 70 71.4
CSS0003515 Camellia sinensis var. sinensis HOM05D003040 ORTHO05D003443 1.7e-17 92.4 69 69.6
Nn1g09813 Nelumbo nucifera HOM05D003040 ORTHO05D003443 5.1e-17 90.9 68 72.1
PGR083G1221 Punica granatum HOM05D003040 ORTHO05D003443 5.1e-17 90.9 85 58.8
Cfa008707 Carpinus fangiana HOM05D003040 ORTHO05D003443 8.6e-17 90.1 69 73.9
Haze_11716 Corylus avellana HOM05D003040 ORTHO05D003443 8.6e-17 90.1 69 73.9
ClCG08G003690 Citrullus lanatus HOM05D003040 ORTHO05D003443 1.5e-16 89.4 63 69.8
MBI11_g07423_MAGBIO Magnolia biondii HOM05D003040 ORTHO05D003443 1.5e-16 89.4 76 67.1
MD04G1027900 Malus domestica HOM05D003040 ORTHO05D003443 1.9e-16 89.0 72 68.1
QL10p044472 Quercus lobata HOM05D003040 ORTHO05D003443 3.3e-16 88.2 69 69.6
Prupe.1G177300 Prunus persica HOM05D003040 ORTHO05D003443 4.3e-16 87.8 74 63.5
Sopen12g033470 Solanum pennellii HOM05D003040 ORTHO05D003443 4.3e-16 87.8 77 58.4
Cc03_g10850 Coffea canephora HOM05D003040 ORTHO05D003443 5.6e-16 87.4 69 66.7
Aqoxy2G04067 Aquilegia oxysepala HOM05D003040 ORTHO05D003443 1.2e-15 86.3 69 63.8
PGSC0003DMG402004586 Solanum tuberosum HOM05D003040 ORTHO05D003443 1.2e-15 86.3 68 63.2
Dinv22709 Davidia involucrata HOM05D003040 ORTHO05D003443 3.6e-15 84.7 64 71.9
TAR365G0675 Trochodendron aralioides HOM05D003040 ORTHO05D003443 3.6e-15 84.7 60 76.7
CANSAT78G2083 Cannabis sativa HOM05D003040 ORTHO05D003443 4.7e-15 84.3 82 57.3
PGSC0003DMG400021621 Solanum tuberosum HOM05D003040 ORTHO05D003443 6.2e-15 84.0 65 63.1
Dinv09885 Davidia involucrata HOM05D003040 ORTHO05D003443 8.1e-15 83.6 69 65.2
FvH4_4g12280 Fragaria vesca HOM05D003040 ORTHO05D003443 8.1e-15 83.6 69 65.2
FAN07G1530 Fragaria x ananassa HOM05D003040 ORTHO05D003443 8.1e-15 83.6 69 65.2
FAN12G3503 Fragaria x ananassa HOM05D003040 ORTHO05D003443 8.1e-15 83.6 69 65.2
FAN17G1608 Fragaria x ananassa HOM05D003040 ORTHO05D003443 8.1e-15 83.6 69 65.2
FAN22G2136 Fragaria x ananassa HOM05D003040 ORTHO05D003443 8.1e-15 83.6 69 65.2
Lsat_1_v5_gn_2_48200 Lactuca sativa HOM05D003040 ORTHO05D003443 8.1e-15 83.6 67 68.7
GSVIVG01031660001 Vitis vinifera HOM05D003040 ORTHO05D003443 8.1e-15 83.6 71 66.2
HanXRQChr10g0293921 Helianthus annuus HOM05D003040 ORTHO05D003443 1.1e-14 83.2 71 60.6
Peaxi162Scf00378g00633 Petunia axillaris HOM05D003040 ORTHO05D003443 1.1e-14 83.2 66 60.6
Migut.N00459 Erythranthe guttata HOM05D003040 ORTHO05D003443 1.4e-14 82.8 72 63.9
Sed0022991 Sechium edule HOM05D003040 ORTHO05D003443 1.4e-14 82.8 74 63.5
Sc25g0005640 Simmondsia chinensis HOM05D003040 ORTHO05D003443 1.8e-14 82.4 64 65.6
Hma1.2p1_0412F.1_g147250 Hydrangea macrophylla HOM05D003040 ORTHO05D003443 2.4e-14 82.0 69 65.2
Rhsim09G0035800 Rhododendron simsii HOM05D003040 ORTHO05D003443 2.4e-14 82.0 85 55.3
FAN12G1098 Fragaria x ananassa HOM05D003040 ORTHO05D003443 4.0e-14 81.3 69 65.2
Nitab4.5_0000978g0160 Nicotiana tabacum HOM05D003040 ORTHO05D003443 4.0e-14 81.3 73 58.9
Thecc.04G192600 Theobroma cacao HOM05D003040 ORTHO05D003443 4.0e-14 81.3 67 61.2
ECA238G0291 Erigeron canadensis HOM05D003040 ORTHO05D003443 5.2e-14 80.9 68 64.7
MBI07_g04009_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D010091 5.2e-14 80.9 72 59.7
Duzib268G1117 Durio zibethinus HOM05D003040 ORTHO05D003443 1.2e-13 79.7 67 64.2
Nitab4.5_0006519g0010 Nicotiana tabacum HOM05D003040 ORTHO05D003443 1.2e-13 79.7 63 63.5
Duzib268G1790 Durio zibethinus HOM05D003040 ORTHO05D003443 1.5e-13 79.3 67 64.2
Potri.014G147000 Populus trichocarpa HOM05D003040 ORTHO05D003443 1.5e-13 79.3 69 62.3
Sabra02G0178100 Salix brachista HOM05D003040 ORTHO05D003443 1.5e-13 79.3 66 63.6
Potri.002G233400 Populus trichocarpa HOM05D003040 ORTHO05D003443 2.6e-13 78.6 70 62.9
SalBow6G3639 Salvia bowleyana HOM05D003040 ORTHO05D003443 2.6e-13 78.6 69 63.8
Eucgr.H00463 Eucalyptus grandis HOM05D003040 ORTHO05D003443 3.4e-13 78.2 65 61.5
vmacro00570 Vaccinium macrocarpon HOM05D003040 ORTHO05D003443 3.4e-13 78.2 69 59.4
Ah.13g077600 Amaranthus hybridus HOM05D000425 ORTHO05D007728 4.4e-13 77.8 72 59.7
AUR62020938 Chenopodium quinoa HOM05D003040 ORTHO05D003443 4.4e-13 77.8 66 62.1
RcHm_v2.0_Chr4g0410351 Rosa chinensis HOM05D003040 ORTHO05D003443 5.8e-13 77.4 69 59.4
Medtr7g021660 Medicago truncatula HOM05D003040 ORTHO05D003443 7.6e-13 77.0 70 62.9
Oeu007221.1 Olea europaea HOM05D003040 ORTHO05D003443 7.6e-13 77.0 65 64.6
CAN.G484.127 Capsicum annuum HOM05D003040 ORTHO05D003443 9.9e-13 76.6 65 60.0
DCAR_027482 Daucus carota HOM05D003040 ORTHO05D003443 9.9e-13 76.6 70 60.0
COL.COLO4_05703 Corchorus olitorius HOM05D003040 ORTHO05D003443 1.3e-12 76.3 68 61.8
Nitab4.5_0006213g0060 Nicotiana tabacum HOM05D003040 ORTHO05D003443 1.3e-12 76.3 67 62.7
TPR.G2917 Trifolium pratense HOM05D003040 ORTHO05D003443 1.7e-12 75.9 69 62.3
Peaxi162Scf00286g00236 Petunia axillaris HOM05D003040 ORTHO05D003443 2.2e-12 75.5 67 59.7
Potri.013G086600 Populus trichocarpa HOM05D003040 ORTHO05D003443 2.2e-12 75.5 68 60.3
MSTRG.24594 Avicennia marina HOM05D003040 ORTHO05D003443 2.9e-12 75.1 68 61.8
Glyma.08G259300 Glycine max HOM05D003040 ORTHO05D003443 2.9e-12 75.1 69 63.8
Lj1g0021745 Lotus japonicus HOM05D003040 ORTHO05D003443 2.9e-12 75.1 68 63.2
QL01p048572 Quercus lobata HOM05D003040 ORTHO05D003443 2.9e-12 75.1 69 52.2
Sabra13G0077300 Salix brachista HOM05D003040 ORTHO05D003443 2.9e-12 75.1 66 59.1
EL10Ac3g07394 Beta vulgaris HOM05D003040 ORTHO05D003443 3.8e-12 74.7 66 59.1
Phvul.008G018000 Phaseolus vulgaris HOM05D003040 ORTHO05D003443 3.8e-12 74.7 66 65.2
VMungo1383G1471 Vigna mungo HOM05D003040 ORTHO05D003443 3.8e-12 74.7 66 65.2
PSO675G7126 Papaver somniferum HOM05D003040 ORTHO05D003443 4.9e-12 74.3 81 59.3
Manes.12G006100 Manihot esculenta HOM05D003040 ORTHO05D003443 6.4e-12 73.9 69 58.0
Glyma.18G283500 Glycine max HOM05D003040 ORTHO05D003443 8.4e-12 73.6 69 62.3
Psat3g189120 Pisum sativum HOM05D003040 ORTHO05D003443 8.4e-12 73.6 69 59.4
PSO017G5902 Papaver somniferum HOM05D003040 ORTHO05D003443 1.4e-11 72.8 81 56.8
Gohir.A02G017900 Gossypium hirsutum HOM05D003040 ORTHO05D003443 2.4e-11 72.0 68 58.8
Duzib151G0919 Durio zibethinus HOM05D003040 ORTHO05D003443 3.2e-11 71.6 63 60.3
Gohir.D02G020100 Gossypium hirsutum HOM05D003040 ORTHO05D003443 3.2e-11 71.6 68 58.8
Gorai.005G025300 Gossypium raimondii HOM05D003040 ORTHO05D003443 3.2e-11 71.6 68 58.8
Ciclev10012906m.g Citrus clementina HOM05D003040 ORTHO05D003443 5.4e-11 70.9 64 60.9
Potri.019G053300 Populus trichocarpa HOM05D003040 ORTHO05D003443 5.4e-11 70.9 71 54.9
CAN.G710.53 Capsicum annuum HOM05D003040 ORTHO05D003443 1.6e-10 69.3 64 57.8
TWI09G0779 Tripterygium wilfordii HOM05D003040 ORTHO05D003443 1.6e-10 69.3 78 48.7
Sabra19G0062800 Salix brachista HOM05D003040 ORTHO05D003443 2.1e-10 68.9 73 50.7
GSVIVG01019115001 Vitis vinifera HOM05D003040 ORTHO05D003443 2.1e-10 68.9 55 61.8
ATR0308G001 Amborella trichopoda HOM05D003040 ORTHO05D003443 3.5e-10 68.2 64 57.8
Hund07342 Selenicereus undatus HOM05D003040 ORTHO05D003443 4.6e-10 67.8 68 51.5
Lsat_1_v5_gn_1_69541 Lactuca sativa HOM05D003040 ORTHO05D003443 6.0e-10 67.4 70 58.6
MD04G1244300 Malus domestica HOM05D003040 ORTHO05D003443 7.8e-10 67.0 81 44.4
Solyc09g098425.1 Solanum lycopersicum HOM05D003040 ORTHO05D003443 1.3e-09 66.2 60 56.7
Prupe.6G360900 Prunus persica HOM05D003040 ORTHO05D003443 1.7e-09 65.9 70 51.4
arahy.Tifrunner.gnm1.ann1.D458E1 Arachis hypogaea HOM05D003040 ORTHO05D003443 6.6e-09 63.9 71 52.1
arahy.Tifrunner.gnm1.ann1.EIQ915 Arachis hypogaea HOM05D003040 ORTHO05D003443 6.6e-09 63.9 71 52.1
Lalb_Chr02g0144521 Lupinus albus HOM05D003040 ORTHO05D003443 6.6e-09 63.9 60 61.7
HanXRQChr01g0021741 Helianthus annuus HOM05D003040 ORTHO05D003443 1.1e-08 63.2 69 50.7
Lj1g0018351 Lotus japonicus HOM05D003040 ORTHO05D003443 1.5e-08 62.8 61 50.8
Cfa006269 Carpinus fangiana HOM05D003040 ORTHO05D003443 4.3e-08 61.2 73 49.3
Thecc.05G199700 Theobroma cacao HOM05D003040 ORTHO05D003443 4.3e-08 61.2 66 51.5
CiPaw.07G079700 Carya illinoinensis HOM05D003040 ORTHO05D003443 7.3e-08 60.5 66 51.5
Gohir.D05G171700 Gossypium hirsutum HOM05D001059 ORTHO05D000873 9.6e-08 60.1 90 42.2
Gorai.009G176800 Gossypium raimondii HOM05D001059 ORTHO05D000873 9.6e-08 60.1 90 42.2
Lalb_Chr10g0092111 Lupinus albus HOM05D003040 ORTHO05D003443 9.6e-08 60.1 64 56.2
HPP92_000352 Vanilla planifolia HOM05D003040 ORTHO05D003443 9.6e-08 60.1 79 44.3
MSTRG.328 Avicennia marina HOM05D003040 ORTHO05D003443 1.2e-07 59.7 74 45.9
Gohir.A05G168500 Gossypium hirsutum HOM05D001059 ORTHO05D000873 1.6e-07 59.3 75 46.7
Potri.005G227500 Populus trichocarpa HOM05D001059 ORTHO05D000873 1.6e-07 59.3 51 56.9
Sed0019571 Sechium edule HOM05D001059 ORTHO05D000873 1.6e-07 59.3 69 44.9
Ciclev10006712m.g Citrus clementina HOM05D001059 ORTHO05D000873 2.1e-07 58.9 56 51.8
Dinv29107 Davidia involucrata HOM05D003040 ORTHO05D003443 2.1e-07 58.9 67 49.3
GSVIVG01027848001 Vitis vinifera HOM05D001059 ORTHO05D000873 2.1e-07 58.9 53 54.7
Haze_04549 Corylus avellana HOM05D003040 ORTHO05D003443 2.8e-07 58.5 68 48.5
Potri.010G069500 Populus trichocarpa HOM05D001059 ORTHO05D000873 3.6e-07 58.2 53 58.5
HPP92_000419 Vanilla planifolia HOM05D003040 ORTHO05D003443 3.6e-07 58.2 70 45.7
Atru.chr12.1791 Acer truncatum HOM05D003040 ORTHO05D003443 6.2e-07 57.4 70 50.0
Actinidia35925 Actinidia chinensis HOM05D003040 ORTHO05D003443 6.2e-07 57.4 46 63.0
Duzib138G1707 Durio zibethinus HOM05D001059 ORTHO05D000873 8.1e-07 57.0 50 56.0
RcHm_v2.0_Chr3g0447931 Rosa chinensis HOM05D003040 ORTHO05D003443 1.1e-06 56.6 87 42.5
Sed0003752 Sechium edule HOM05D001059 ORTHO05D000873 1.1e-06 56.6 51 56.9
Sopen09g036360 Solanum pennellii HOM05D003040 ORTHO05D003443 1.1e-06 56.6 61 55.7
Potri.008G168900 Populus trichocarpa HOM05D001059 ORTHO05D000873 1.4e-06 56.2 70 45.7
Sed0003182 Sechium edule HOM05D001059 ORTHO05D000873 1.4e-06 56.2 68 50.0
COL.COLO4_27384 Corchorus olitorius HOM05D003040 ORTHO05D003443 1.8e-06 55.8 53 52.8
Duzib133G0589 Durio zibethinus HOM05D001059 ORTHO05D000873 1.8e-06 55.8 50 54.0
Duzib177G0951 Durio zibethinus HOM05D003040 ORTHO05D003443 1.8e-06 55.8 66 48.5
Lalb_Chr21g0314001 Lupinus albus HOM05D001059 ORTHO05D000873 1.8e-06 55.8 50 54.0
PSO832G2693 Papaver somniferum HOM05D001059 ORTHO05D000873 1.8e-06 55.8 56 50.0
Potri.002G035500 Populus trichocarpa HOM05D001059 ORTHO05D000873 1.8e-06 55.8 56 53.6
PGR042G1077 Punica granatum HOM05D001059 ORTHO05D000873 1.8e-06 55.8 48 58.3
Sabra10G0037600 Salix brachista HOM05D001059 ORTHO05D000873 1.8e-06 55.8 53 58.5
Zm00001eb169890 Zea mays HOM05D003040 ORTHO05D003443 1.8e-06 55.8 68 47.1
ClCG03G004940 Citrullus lanatus HOM05D001059 ORTHO05D000873 2.4e-06 55.5 68 50.0
CsaV3_1G011000 Cucumis sativus L. HOM05D001059 ORTHO05D000873 2.4e-06 55.5 68 50.0
Lsat_1_v5_gn_9_48880 Lactuca sativa HOM05D003040 ORTHO05D003443 2.4e-06 55.5 79 48.1
Manes.12G034400 Manihot esculenta HOM05D001059 ORTHO05D000873 2.4e-06 55.5 51 54.9
Manes.17G036200 Manihot esculenta HOM05D001059 ORTHO05D000873 2.4e-06 55.5 77 41.6
Sc13g0005840 Simmondsia chinensis HOM05D001059 ORTHO05D000873 2.4e-06 55.5 45 62.2
TWI09G1101 Tripterygium wilfordii HOM05D001059 ORTHO05D000873 2.4e-06 55.5 54 51.9
Atru.chr5.1767 Acer truncatum HOM05D001059 ORTHO05D000873 3.1e-06 55.1 50 54.0
ClCG00G001460 Citrullus lanatus HOM05D001059 ORTHO05D000873 3.1e-06 55.1 50 56.0
ClCG07G001190 Citrullus lanatus HOM05D001059 ORTHO05D000873 3.1e-06 55.1 50 56.0
Eucgr.E04111 Eucalyptus grandis HOM05D001059 ORTHO05D000873 3.1e-06 55.1 43 62.8
FAN14G2832 Fragaria x ananassa HOM05D003040 ORTHO05D003443 3.1e-06 55.1 79 43.0
Glyma.18G241600 Glycine max HOM05D003040 ORTHO05D003443 3.1e-06 55.1 79 44.3
HanXRQChr14g0431461 Helianthus annuus HOM05D003040 ORTHO05D003443 3.1e-06 55.1 66 48.5
QL09p040135 Quercus lobata HOM05D001059 ORTHO05D000873 3.1e-06 55.1 50 56.0
Sc16g0010350 Simmondsia chinensis HOM05D003040 ORTHO05D003443 3.1e-06 55.1 33 69.7
TWI73G0920 Tripterygium wilfordii HOM05D001059 ORTHO05D000873 3.1e-06 55.1 54 51.9
arahy.Tifrunner.gnm1.ann1.6PY5Z8 Arachis hypogaea HOM05D001059 ORTHO05D000873 4.0e-06 54.7 46 56.5
arahy.Tifrunner.gnm1.ann1.R1T9SF Arachis hypogaea HOM05D001059 ORTHO05D000873 4.0e-06 54.7 46 56.5
CANSAT54G0604 Cannabis sativa HOM05D003040 ORTHO05D003443 4.0e-06 54.7 33 69.7
Duzib128G0697 Durio zibethinus HOM05D003040 ORTHO05D003443 4.0e-06 54.7 74 44.6
Migut.F01874 Erythranthe guttata HOM05D003040 ORTHO05D003443 4.0e-06 54.7 68 44.1
Gohir.A05G391300 Gossypium hirsutum HOM05D003040 ORTHO05D003443 4.0e-06 54.7 76 46.1
HanXRQChr05g0130011 Helianthus annuus HOM05D001059 ORTHO05D000873 4.0e-06 54.7 48 56.2
Medtr7g079870 Medicago truncatula HOM05D003040 ORTHO05D003443 4.0e-06 54.7 58 51.7
PSO210G5835 Papaver somniferum HOM05D001059 ORTHO05D000873 4.0e-06 54.7 55 49.1
THA.LOC104806292 Tarenaya hassleriana HOM05D001059 ORTHO05D000873 4.0e-06 54.7 46 58.7
Ciclev10017098m.g Citrus clementina HOM05D001059 ORTHO05D000873 5.2e-06 54.3 48 56.2
Haze_24663 Corylus avellana HOM05D001059 ORTHO05D000873 5.2e-06 54.3 50 54.0
MD10G1180200 Malus domestica HOM05D001059 ORTHO05D000873 5.2e-06 54.3 50 52.0
Phvul.008G054500 Phaseolus vulgaris HOM05D003040 ORTHO05D003443 5.2e-06 54.3 54 50.0
CARHR003330 Cardamine hirsuta HOM05D001059 ORTHO05D000873 6.9e-06 53.9 56 46.4
DCAR_004203 Daucus carota HOM05D001059 ORTHO05D000873 6.9e-06 53.9 48 54.2
Manes.16G011200 Manihot esculenta HOM05D001059 ORTHO05D000873 6.9e-06 53.9 77 41.6
Sabra02G0028700 Salix brachista HOM05D001059 ORTHO05D000873 6.9e-06 53.9 54 53.7
SalBow1G6107 Salvia bowleyana HOM05D000001 ORTHO05D010091 6.9e-06 53.9 73 43.8
Sed0025090 Sechium edule HOM05D001059 ORTHO05D000873 6.9e-06 53.9 48 54.2
Thecc.01G254500 Theobroma cacao HOM05D001059 ORTHO05D000873 6.9e-06 53.9 50 52.0
TPR.G30349 Trifolium pratense HOM05D003040 ORTHO05D003443 6.9e-06 53.9 57 50.9
Cfa002451 Carpinus fangiana HOM05D001059 ORTHO05D000873 9.0e-06 53.5 47 55.3
MELO3C022379.2 Cucumis melo HOM05D001059 ORTHO05D000873 9.0e-06 53.5 47 55.3
Duzib052G0617 Durio zibethinus HOM05D001059 ORTHO05D000873 9.0e-06 53.5 69 44.9
MD00G1200000 Malus domestica HOM05D001059 ORTHO05D000873 9.0e-06 53.5 42 59.5
MD05G1193500 Malus domestica HOM05D001059 ORTHO05D000873 9.0e-06 53.5 42 59.5
Medtr1g069650 Medicago truncatula HOM05D001059 ORTHO05D000873 9.0e-06 53.5 50 52.0
Prupe.1G041800 Prunus persica HOM05D001059 ORTHO05D000873 9.0e-06 53.5 54 42.6
VMungo1383G1123 Vigna mungo HOM05D003040 ORTHO05D003443 9.0e-06 53.5 30 73.3


User provided reference genes

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