Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3C376T8 Lonicera japonica HOM05D006606 ORTHO05D008429 1.8e-90 335.9 166 100.0
Lj3C357T11 Lonicera japonica HOM05D006606 ORTHO05D008429 1.4e-87 326.2 166 97.6
Lsat_1_v5_gn_2_48240 Lactuca sativa HOM05D006606 ORTHO05D008429 1.8e-34 149.8 140 61.4
HanXRQChr10g0293961 Helianthus annuus HOM05D006606 ORTHO05D008429 2.6e-33 146.0 141 58.9
Hma1.2p1_1286F.1_g273130 Hydrangea macrophylla HOM05D006606 ORTHO05D008429 3.4e-33 145.6 150 56.0
Dinv22706 Davidia involucrata HOM05D006606 ORTHO05D008429 4.9e-32 141.7 153 54.9
DCAR_023800 Daucus carota HOM05D006606 ORTHO05D008429 3.1e-26 122.5 148 50.7
TAR362G1133 Trochodendron aralioides HOM05D006606 ORTHO05D008429 6.9e-26 121.3 155 49.7
MSTRG.21987 Avicennia marina HOM05D006606 ORTHO05D008429 1.2e-25 120.6 143 49.0
PGSC0003DMG401004586 Solanum tuberosum HOM05D006606 ORTHO05D008429 1.2e-25 120.6 151 51.7
SalBow6G4530 Salvia bowleyana HOM05D006606 ORTHO05D008429 1.5e-25 120.2 144 52.8
CAN.G484.128 Capsicum annuum HOM05D006606 ORTHO05D008429 2.0e-25 119.8 153 47.7
ECA238G2565 Erigeron canadensis HOM05D001656 ORTHO05D003489 2.6e-25 119.4 75 76.0
Sopen12g033460 Solanum pennellii HOM05D006606 ORTHO05D008429 2.6e-25 119.4 148 52.0
CSS0008381 Camellia sinensis var. sinensis HOM05D006606 ORTHO05D008429 3.4e-25 119.0 151 50.3
Thecc.08G146500 Theobroma cacao HOM05D006606 ORTHO05D008429 3.4e-25 119.0 147 46.9
CSS0041194 Camellia sinensis var. sinensis HOM05D006606 ORTHO05D008429 4.5e-25 118.6 151 50.3
Solyc12g098710.2 Solanum lycopersicum HOM05D006606 ORTHO05D008429 7.6e-25 117.9 148 52.7
Migut.N00458 Erythranthe guttata HOM05D006606 ORTHO05D008429 1.0e-24 117.5 154 48.7
Potri.014G146900 Populus trichocarpa HOM05D006606 ORTHO05D008429 1.3e-24 117.1 149 51.0
Cc03_g10820 Coffea canephora HOM05D006606 ORTHO05D008429 1.7e-24 116.7 160 48.8
Manes.01G001200 Manihot esculenta HOM05D006606 ORTHO05D008429 2.2e-24 116.3 149 45.6
Nitab4.5_0006519g0030 Nicotiana tabacum HOM05D006606 ORTHO05D008429 3.8e-24 115.5 157 49.0
Nitab4.5_0000978g0190 Nicotiana tabacum HOM05D006606 ORTHO05D008429 5.0e-24 115.2 153 49.0
Oeu007220.2 Olea europaea HOM05D006606 ORTHO05D008429 8.4e-24 114.4 149 49.0
Duzib041G0430 Durio zibethinus HOM05D006606 ORTHO05D008429 1.1e-23 114.0 156 48.1
Nn1g09788 Nelumbo nucifera HOM05D006606 ORTHO05D008429 1.1e-23 114.0 156 51.3
Gohir.D02G071700 Gossypium hirsutum HOM05D006606 ORTHO05D008429 1.9e-23 113.2 144 50.0
Gorai.005G080900 Gossypium raimondii HOM05D006606 ORTHO05D008429 3.2e-23 112.5 144 50.0
CANSAT78G0692 Cannabis sativa HOM05D006606 ORTHO05D008429 5.5e-23 111.7 138 47.8
Rhsim02G0071700 Rhododendron simsii HOM05D006606 ORTHO05D008429 5.5e-23 111.7 153 50.3
COL.COLO4_38511 Corchorus olitorius HOM05D006606 ORTHO05D008429 7.1e-23 111.3 90 65.6
Gohir.A02G065800 Gossypium hirsutum HOM05D006606 ORTHO05D008429 9.3e-23 110.9 154 48.1
MD04G1028100 Malus domestica HOM05D006606 ORTHO05D008429 1.6e-22 110.2 154 45.5
Lj4g0003716 Lotus japonicus HOM05D006606 ORTHO05D008429 4.6e-22 108.6 148 45.9
Sabra14G0110300 Salix brachista HOM05D006606 ORTHO05D008429 4.6e-22 108.6 152 48.0
SGA_v2.0_scaffold178G39486 Striga asiatica HOM05D006606 ORTHO05D008429 7.9e-22 107.8 154 46.1
CiPaw.03G116300 Carya illinoinensis HOM05D006606 ORTHO05D008429 1.0e-21 107.5 158 42.4
Hund24463 Selenicereus undatus HOM05D006606 ORTHO05D008429 1.3e-21 107.1 151 47.0
Ah.04g149880 Amaranthus hybridus HOM05D006606 ORTHO05D008429 1.8e-21 106.7 152 46.1
Prupe.1G177500 Prunus persica HOM05D006606 ORTHO05D008429 3.0e-21 105.9 144 45.8
AUR62018480 Chenopodium quinoa HOM05D006606 ORTHO05D008429 3.9e-21 105.5 148 49.3
Cpa.g.sc8.304 Carica papaya HOM05D006606 ORTHO05D008429 5.1e-21 105.1 153 48.4
Medtr3g084950 Medicago truncatula HOM05D006606 ORTHO05D008429 6.7e-21 104.8 149 45.6
AUR62020943 Chenopodium quinoa HOM05D006606 ORTHO05D008429 8.7e-21 104.4 153 47.7
FAN22G0658 Fragaria x ananassa HOM05D006606 ORTHO05D008429 8.7e-21 104.4 147 43.5
TWI09G1191 Tripterygium wilfordii HOM05D006606 ORTHO05D008429 1.1e-20 104.0 143 44.8
A06p07610 Brassica napus HOM05D006606 ORTHO05D008429 1.5e-20 103.6 94 55.3
BraA06t23963Z Brassica rapa HOM05D006606 ORTHO05D008429 1.5e-20 103.6 94 55.3
Psat7g076840 Pisum sativum HOM05D006606 ORTHO05D008429 1.5e-20 103.6 145 44.1
BcaC05g24964 Brassica carinata HOM05D006606 ORTHO05D008429 1.9e-20 103.2 107 53.3
FvH4_4g12260 Fragaria vesca HOM05D006606 ORTHO05D008429 1.9e-20 103.2 147 44.2
FAN12G1058 Fragaria x ananassa HOM05D006606 ORTHO05D008429 2.5e-20 102.8 147 44.2
FAN12G2609 Fragaria x ananassa HOM05D006606 ORTHO05D008429 2.5e-20 102.8 147 44.2
Glyma.11G252500 Glycine max HOM05D006606 ORTHO05D008429 2.5e-20 102.8 86 59.3
Glyma.18G004400 Glycine max HOM05D006606 ORTHO05D008429 3.3e-20 102.4 88 60.2
Medtr8g097190 Medicago truncatula HOM05D006606 ORTHO05D008429 3.3e-20 102.4 137 43.1
RcHm_v2.0_Chr4g0410061 Rosa chinensis HOM05D006606 ORTHO05D008429 3.3e-20 102.4 150 45.3
Sp1g09530 Schrenkiella parvula HOM05D006606 ORTHO05D008429 3.3e-20 102.4 93 57.0
FAN17G1362 Fragaria x ananassa HOM05D006606 ORTHO05D008429 5.7e-20 101.7 147 42.9
AT1G10830 Arabidopsis thaliana HOM05D006606 ORTHO05D008429 7.4e-20 101.3 146 45.2
PSO675G4216 Papaver somniferum HOM05D006606 ORTHO05D008429 7.4e-20 101.3 150 45.3
Aqoxy2G04062 Aquilegia oxysepala HOM05D006606 ORTHO05D008429 1.3e-19 100.5 153 47.7
FAN07G1739 Fragaria x ananassa HOM05D006606 ORTHO05D008429 2.2e-19 99.8 143 43.4
Phvul.001G263600 Phaseolus vulgaris HOM05D006606 ORTHO05D008429 2.2e-19 99.8 135 45.2
Actinidia28936 Actinidia chinensis HOM05D006606 ORTHO05D008429 2.8e-19 99.4 73 67.1
Aa31LG1G4020 Aethionema arabicum HOM05D006606 ORTHO05D008429 2.8e-19 99.4 92 58.7
AL1G21760 Arabidopsis lyrata HOM05D006606 ORTHO05D008429 2.8e-19 99.4 94 57.4
PSO017G6954 Papaver somniferum HOM05D006606 ORTHO05D008429 2.8e-19 99.4 147 45.6
C05p09200 Brassica napus HOM05D006606 ORTHO05D008429 3.7e-19 99.0 95 52.6
BolC5t29661H Brassica oleracea HOM05D000246 ORTHO05D005907 3.7e-19 99.0 95 52.6
CARHR011050 Cardamine hirsuta HOM05D006606 ORTHO05D008429 3.7e-19 99.0 150 43.3
Oeu013395.1 Olea europaea HOM05D006606 ORTHO05D008429 3.7e-19 99.0 78 61.5
Psat5g098600 Pisum sativum HOM05D006606 ORTHO05D008429 3.7e-19 99.0 148 43.2
TPR.G18107 Trifolium pratense HOM05D006606 ORTHO05D008429 3.7e-19 99.0 152 42.1
Carub.0001s1037 Capsella rubella HOM05D006606 ORTHO05D008429 6.3e-19 98.2 145 46.9
Thhalv10007996m.g Eutrema salsugineum HOM05D006606 ORTHO05D008429 1.1e-18 97.4 144 45.8
Lalb_Chr23g0278211 Lupinus albus HOM05D006606 ORTHO05D008429 1.1e-18 97.4 124 45.2
GSVIVG01031662001 Vitis vinifera HOM05D006606 ORTHO05D008429 1.1e-18 97.4 77 62.3
Lalb_Chr11g0075821 Lupinus albus HOM05D006606 ORTHO05D008429 1.8e-18 96.7 74 63.5
CsaV3_4G003370 Cucumis sativus L. HOM05D006606 ORTHO05D008429 2.4e-18 96.3 150 44.0
HPP92_024552 Vanilla planifolia HOM05D006606 ORTHO05D008429 2.4e-18 96.3 148 40.5
ClCG07G015730 Citrullus lanatus HOM05D006606 ORTHO05D008429 3.1e-18 95.9 151 44.4
MELO3C017709.2 Cucumis melo HOM05D006606 ORTHO05D008429 4.1e-18 95.5 150 44.7
arahy.Tifrunner.gnm1.ann1.B1TKD1 Arachis hypogaea HOM05D006606 ORTHO05D008429 5.3e-18 95.1 67 65.7
THA.LOC104823658 Tarenaya hassleriana HOM05D006606 ORTHO05D008429 5.3e-18 95.1 149 43.6
Sc19g0007700 Simmondsia chinensis HOM05D006606 ORTHO05D008429 6.9e-18 94.7 150 44.0
Cfa008709 Carpinus fangiana HOM05D006606 ORTHO05D008429 9.0e-18 94.4 149 45.6
Ca_18015_v3 Cicer arietinum L. HOM05D006606 ORTHO05D008429 9.0e-18 94.4 136 40.4
Eucgr.C03850 Eucalyptus grandis HOM05D006606 ORTHO05D008429 1.5e-17 93.6 155 43.2
TPR.G26571 Trifolium pratense HOM05D006606 ORTHO05D008429 1.5e-17 93.6 74 59.5
VMungo1383G1705 Vigna mungo HOM05D006606 ORTHO05D008429 2.6e-17 92.8 64 65.6
arahy.Tifrunner.gnm1.ann1.V8KL47 Arachis hypogaea HOM05D006606 ORTHO05D008429 4.5e-17 92.0 140 43.6
Ciclev10020648m.g Citrus clementina HOM05D006606 ORTHO05D008429 7.7e-17 91.3 64 67.2
Haze_11718 Corylus avellana HOM05D006606 ORTHO05D008429 2.9e-16 89.4 60 71.7
QL10p044478 Quercus lobata HOM05D006606 ORTHO05D008429 2.9e-16 89.4 153 43.1
Sed0006939 Sechium edule HOM05D006606 ORTHO05D008429 2.9e-16 89.4 146 43.2
Zm00001eb408760 Zea mays HOM05D006606 ORTHO05D008429 5.0e-16 88.6 134 44.0
Ca_16442_v3 Cicer arietinum L. HOM05D006606 ORTHO05D008429 1.4e-15 87.0 146 39.7
unitig_22.g6833 Utricularia gibba HOM05D006606 ORTHO05D008429 9.4e-15 84.3 77 53.2
CDE09G0731 Ceratophyllum demersum HOM05D006606 ORTHO05D008429 2.1e-14 83.2 116 46.6
Atru.chr3.1730 Acer truncatum HOM05D006606 ORTHO05D008429 4.6e-14 82.0 148 39.9
PGR119G1918 Punica granatum HOM05D006606 ORTHO05D008429 1.0e-13 80.9 67 58.2
ATR0561G173 Amborella trichopoda HOM05D006606 ORTHO05D008429 1.4e-13 80.5 156 38.5
Peaxi162Scf00378g00631 Petunia axillaris HOM05D006606 ORTHO05D008429 2.3e-13 79.7 132 43.2
Pp3c17_7640 Physcomitrium patens HOM05D006606 ORTHO05D008429 5.1e-13 78.6 68 54.4
Os12g0405200 Oryza sativa ssp. japonica HOM05D006606 ORTHO05D008429 1.5e-12 77.0 153 35.9
AagrBONN_evm.TU.Sc2ySwM_228.2148 Anthoceros agrestis HOM05D006606 ORTHO05D008429 3.3e-12 75.9 86 47.7
Mapoly0040s0092 Marchantia polymorpha HOM05D006606 ORTHO05D008429 5.7e-12 75.1 110 41.8
Mapoly0040s0091 Marchantia polymorpha HOM05D006606 ORTHO05D008429 1.3e-11 73.9 110 40.9
Pp3c1_22590 Physcomitrium patens HOM05D006606 ORTHO05D008429 6.3e-11 71.6 72 48.6
SMO270G0095 Selaginella moellendorffii HOM05D006606 ORTHO05D008429 5.9e-09 65.1 63 46.0
Oeu018839.1 Olea europaea HOM05D006606 ORTHO05D289568 1.4e-07 60.5 69 43.5
EL10Ac3g07392 Beta vulgaris HOM05D006606 ORTHO05D008429 5.5e-07 58.5 123 39.8


User provided reference genes

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