Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3C32G4 Lonicera japonica HOM05D006266 ORTHO05D008016 0.0e+00 1181.4 568 100.0
Lj3C1G0 Lonicera japonica HOM05D006266 ORTHO05D008016 0.0e+00 1157.1 568 98.2
Dinv44175 Davidia involucrata HOM05D006266 ORTHO05D008016 6.4e-257 890.6 685 67.0
Gohir.A10G139200 Gossypium hirsutum HOM05D006266 ORTHO05D008016 1.6e-247 859.4 646 66.9
Duzib151G0889 Durio zibethinus HOM05D006266 ORTHO05D008016 1.8e-246 855.9 646 66.6
Gorai.011G140700 Gossypium raimondii HOM05D006266 ORTHO05D008016 2.1e-244 849.0 646 66.4
CANSAT78G1968 Cannabis sativa HOM05D006266 ORTHO05D008016 6.2e-244 847.4 632 67.7
QL10p050722 Quercus lobata HOM05D006266 ORTHO05D008016 8.2e-244 847.0 691 64.1
Gohir.D10G127600 Gossypium hirsutum HOM05D006266 ORTHO05D008016 1.4e-243 846.3 646 66.1
Cfa015189 Carpinus fangiana HOM05D006266 ORTHO05D008016 9.0e-243 843.6 547 73.3
Atru.chr4.1256 Acer truncatum HOM05D006266 ORTHO05D008016 4.5e-242 841.3 653 65.8
Thecc.04G175700 Theobroma cacao HOM05D006266 ORTHO05D008016 4.5e-242 841.3 647 65.7
Nn7g37595 Nelumbo nucifera HOM05D006266 ORTHO05D008016 7.6e-242 840.5 656 65.4
DCAR_028531 Daucus carota HOM05D006266 ORTHO05D008016 2.9e-241 838.6 542 74.5
MD04G1042900 Malus domestica HOM05D006266 ORTHO05D008016 2.9e-241 838.6 610 68.5
Sabra17G0016500 Salix brachista HOM05D006266 ORTHO05D008016 3.2e-240 835.1 590 68.8
TAR362G0699 Trochodendron aralioides HOM05D006266 ORTHO05D008016 7.1e-240 833.9 680 62.6
Potri.017G027500 Populus trichocarpa HOM05D006266 ORTHO05D008016 1.2e-239 833.2 583 69.6
Prupe.1G197500 Prunus persica HOM05D006266 ORTHO05D008016 1.6e-239 832.8 634 65.1
MBI07_g02893_MAGBIO Magnolia biondii HOM05D006266 ORTHO05D008016 2.7e-239 832.0 549 72.5
Solyc12g021170.2 Solanum lycopersicum HOM05D006266 ORTHO05D008016 1.3e-238 829.7 596 68.5
PSO675G5931 Papaver somniferum HOM05D006266 ORTHO05D008016 6.7e-238 827.4 554 72.2
Ciclev10019615m.g Citrus clementina HOM05D006266 ORTHO05D008016 5.7e-237 824.3 540 73.3
vmacro00635 Vaccinium macrocarpon HOM05D006266 ORTHO05D008016 5.7e-237 824.3 702 61.3
Sc19g0002870 Simmondsia chinensis HOM05D006266 ORTHO05D008016 7.4e-237 823.9 649 64.7
THA.LOC104805138 Tarenaya hassleriana HOM05D006266 ORTHO05D008016 7.4e-237 823.9 563 70.9
Manes.11G123500 Manihot esculenta HOM05D006266 ORTHO05D008016 1.3e-236 823.2 654 64.2
Lj3g0007796 Lotus japonicus HOM05D006266 ORTHO05D008016 3.7e-236 821.6 543 72.0
Ca_01251_v3 Cicer arietinum L. HOM05D006266 ORTHO05D008016 6.3e-236 820.8 559 70.7
BcaC02g12401 Brassica carinata HOM05D006266 ORTHO05D008016 8.2e-236 820.5 648 64.0
Aa31LG1G25150 Aethionema arabicum HOM05D006266 ORTHO05D008016 1.4e-235 819.7 628 66.2
Lalb_Chr14g0372511 Lupinus albus HOM05D006266 ORTHO05D008016 2.4e-235 818.9 592 67.6
Thhalv10001353m.g Eutrema salsugineum HOM05D006266 ORTHO05D008016 5.3e-235 817.8 633 65.1
GSVIVG01010835001 Vitis vinifera HOM05D006266 ORTHO05D008016 5.3e-235 817.8 537 72.6
C04p04440 Brassica napus HOM05D006266 ORTHO05D008016 1.5e-234 816.2 550 70.5
BolC4t22077H Brassica oleracea HOM05D006266 ORTHO05D008016 1.5e-234 816.2 550 70.5
BraA05t19361Z Brassica rapa HOM05D006266 ORTHO05D008016 2.0e-234 815.8 628 65.1
HanXRQChr01g0023481 Helianthus annuus HOM05D006266 ORTHO05D008016 2.0e-234 815.8 646 64.7
A05p03740 Brassica napus HOM05D006266 ORTHO05D008016 2.6e-234 815.5 651 64.2
TPR.G18865 Trifolium pratense HOM05D006266 ORTHO05D008016 4.5e-234 814.7 548 71.0
Sopen12g011050 Solanum pennellii HOM05D006266 ORTHO05D008016 2.2e-233 812.4 537 72.6
AT2G43400 Arabidopsis thaliana HOM05D006266 ORTHO05D008016 1.4e-232 809.7 646 63.9
Psat5g289640 Pisum sativum HOM05D006266 ORTHO05D008016 1.4e-232 809.7 613 65.1
Carub.0004s2587 Capsella rubella HOM05D006266 ORTHO05D008016 1.9e-232 809.3 626 65.8
Sed0000993 Sechium edule HOM05D006266 ORTHO05D008016 1.9e-232 809.3 644 64.0
Nitab4.5_0001990g0030 Nicotiana tabacum HOM05D006266 ORTHO05D008016 3.2e-232 808.5 568 69.0
Sp4g25480 Schrenkiella parvula HOM05D006266 ORTHO05D008016 4.2e-232 808.1 644 63.7
AL4G42140 Arabidopsis lyrata HOM05D006266 ORTHO05D008016 5.5e-232 807.7 647 63.7
FAN17G0658 Fragaria x ananassa HOM05D006266 ORTHO05D008016 5.5e-232 807.7 534 71.7
FvH4_4g10960 Fragaria vesca HOM05D006266 ORTHO05D008016 7.2e-232 807.4 548 70.3
CAN.G51.9 Capsicum annuum HOM05D006266 ORTHO05D008016 1.2e-231 806.6 554 69.5
Nitab4.5_0000505g0020 Nicotiana tabacum HOM05D006266 ORTHO05D008016 2.1e-231 805.8 584 67.1
Migut.G01347 Erythranthe guttata HOM05D006266 ORTHO05D008016 2.7e-231 805.4 653 63.7
Aqoxy2G04160 Aquilegia oxysepala HOM05D006266 ORTHO05D008016 3.6e-231 805.1 540 71.1
MSTRG.4284 Avicennia marina HOM05D006266 ORTHO05D008016 1.4e-230 803.1 651 62.5
ATR0743G015 Amborella trichopoda HOM05D006266 ORTHO05D008016 3.0e-230 802.0 546 70.5
Lsat_1_v5_gn_1_77821 Lactuca sativa HOM05D006266 ORTHO05D008016 3.0e-230 802.0 642 62.8
Glyma.15G029200 Glycine max HOM05D006266 ORTHO05D008016 5.1e-230 801.2 642 63.9
ClCG05G007190 Citrullus lanatus HOM05D006266 ORTHO05D008016 8.8e-230 800.4 695 60.6
CiPaw.02G052400 Carya illinoinensis HOM05D006266 ORTHO05D008016 1.9e-229 799.3 537 70.9
Phvul.005G153800 Phaseolus vulgaris HOM05D006266 ORTHO05D008016 7.4e-229 797.3 648 63.3
CDE09G1029 Ceratophyllum demersum HOM05D006266 ORTHO05D008016 9.7e-229 797.0 561 67.6
Eucgr.H00345 Eucalyptus grandis HOM05D006266 ORTHO05D008016 1.7e-228 796.2 537 70.0
Hund12414 Selenicereus undatus HOM05D006266 ORTHO05D008016 8.2e-228 793.9 680 61.3
CARHR138470 Cardamine hirsuta HOM05D006266 ORTHO05D008016 1.8e-227 792.7 641 62.9
PGR142G3304 Punica granatum HOM05D006266 ORTHO05D008016 1.2e-226 790.0 604 65.4
RcHm_v2.0_Chr4g0406421 Rosa chinensis HOM05D006266 ORTHO05D008016 2.0e-226 789.3 593 64.9
VMungo1080G0961 Vigna mungo HOM05D006266 ORTHO05D008016 2.6e-226 788.9 668 61.2
Actinidia27081 Actinidia chinensis HOM05D006266 ORTHO05D008016 1.7e-225 786.2 618 65.2
arahy.Tifrunner.gnm1.ann1.D6UD48 Arachis hypogaea HOM05D006266 ORTHO05D008016 1.1e-224 783.5 549 69.6
Oeu024477.1 Olea europaea HOM05D006266 ORTHO05D008016 7.2e-224 780.8 599 64.8
arahy.Tifrunner.gnm1.ann1.JU07H9 Arachis hypogaea HOM05D006266 ORTHO05D008016 1.2e-223 780.0 549 69.6
HPP92_022167 Vanilla planifolia HOM05D006266 ORTHO05D008016 8.8e-222 773.9 633 62.4
SGA_v2.0_scaffold17G08154 Striga asiatica HOM05D006266 ORTHO05D008016 1.1e-221 773.5 704 58.4
Haze_01464 Corylus avellana HOM05D006266 ORTHO05D008016 7.4e-221 770.8 829 51.7
Peaxi162Scf00184g00418 Petunia axillaris HOM05D006266 ORTHO05D008016 4.5e-218 761.5 641 62.6
ECA248G0977 Erigeron canadensis HOM05D006266 ORTHO05D008016 2.2e-217 759.2 514 69.6
Rhsim09G0023000 Rhododendron simsii HOM05D006266 ORTHO05D008016 1.2e-215 753.4 874 49.9
CsaV3_3G015950 Cucumis sativus L. HOM05D006266 ORTHO05D008016 2.7e-215 752.3 630 62.2
Cpa.g.sc9.312 Carica papaya HOM05D006266 ORTHO05D008016 5.3e-211 738.0 651 60.8
PSO017G5469 Papaver somniferum HOM05D006266 ORTHO05D008016 9.4e-208 727.2 556 64.9
Medtr2g099040 Medicago truncatula HOM05D006266 ORTHO05D008016 2.7e-207 725.7 498 69.7
Dinv44151 Davidia involucrata HOM05D006266 ORTHO05D008016 2.2e-204 716.1 468 73.3
Hma1.2p1_0324F.1_g125550 Hydrangea macrophylla HOM05D006266 ORTHO05D008016 3.5e-202 708.8 467 72.4
Pp3c26_13090 Physcomitrium patens HOM05D006266 ORTHO05D008016 4.2e-200 701.8 546 62.5
SMO141G0282 Selaginella moellendorffii HOM05D006266 ORTHO05D008016 2.1e-199 699.5 539 62.7
AUR62023848 Chenopodium quinoa HOM05D006266 ORTHO05D008016 8.6e-185 651.0 562 58.5
AagrBONN_evm.TU.Sc2ySwM_117.3933 Anthoceros agrestis HOM05D006266 ORTHO05D008016 1.4e-179 633.6 500 62.0
Hma1.2p1_0324F.1_g125560 Hydrangea macrophylla HOM05D006266 ORTHO05D008016 3.5e-178 629.0 356 80.9
Cc03_g11970 Coffea canephora HOM05D006266 ORTHO05D008016 3.5e-170 602.4 329 83.0
Cre02.g094300 Chlamydomonas reinhardtii HOM05D006266 ORTHO05D008016 4.9e-156 555.4 550 51.1
MELO3C006793.2 Cucumis melo HOM05D006266 ORTHO05D008016 8.4e-148 528.1 449 60.1
Mapoly0012s0124 Marchantia polymorpha HOM05D006266 ORTHO05D008016 3.9e-145 519.2 444 58.3
PRCOL_00003135 Prasinoderma coloniale HOM05D006266 ORTHO05D008016 8.1e-143 511.5 584 47.9
Cfa026422 Carpinus fangiana HOM05D006266 ORTHO05D008016 9.9e-133 478.0 537 49.2
Haze_26227 Corylus avellana HOM05D006266 ORTHO05D008016 2.9e-132 476.5 558 45.2
Haze_26951 Corylus avellana HOM05D006266 ORTHO05D008016 6.7e-129 465.3 557 44.9
AUR62002342 Chenopodium quinoa HOM05D006266 ORTHO05D008016 4.5e-125 452.6 441 52.8
Zm00001eb043590 Zea mays HOM05D006266 ORTHO05D008016 9.7e-120 434.9 334 62.9
Ah.07g202330 Amaranthus hybridus HOM05D006266 ORTHO05D008016 1.4e-113 414.5 405 59.3
unitig_52.g17681 Utricularia gibba HOM05D006266 ORTHO05D008016 2.3e-105 387.1 383 56.9
Ah.07g202340 Amaranthus hybridus HOM05D006266 ORTHO05D008016 2.3e-97 360.5 201 82.1
Eucgr.L02537 Eucalyptus grandis HOM05D006266 ORTHO05D008016 7.4e-96 355.5 202 79.2
PGSC0003DMG400014944 Solanum tuberosum HOM05D006266 ORTHO05D008016 4.0e-81 306.6 172 80.2
EL10Ac3g06005 Beta vulgaris HOM05D006266 ORTHO05D008016 2.0e-72 277.7 224 65.6
SEGI_14637 Sequoiadendron giganteum HOM05D006266 ORTHO05D008016 9.8e-72 275.4 282 53.2
Cc03_g11980 Coffea canephora HOM05D006266 ORTHO05D008016 2.2e-63 247.7 139 86.3
Sopen02g004370 Solanum pennellii HOM05D006266 ORTHO05D008016 2.2e-63 247.7 133 88.7
FAN12G3251 Fragaria x ananassa HOM05D006266 ORTHO05D008016 6.4e-63 246.1 144 79.9
CSS0026769 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 7.8e-53 212.6 120 82.5
CSS0016449 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 2.0e-48 198.0 113 86.7
Os10g0516300 Oryza sativa ssp. japonica HOM05D006266 ORTHO05D008016 4.4e-48 196.8 114 78.1
CSS0001057 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 3.2e-38 164.1 139 63.3
CSS0026763 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 5.1e-36 156.8 127 64.6
SEGI_08796 Sequoiadendron giganteum HOM05D006266 ORTHO05D008016 9.9e-32 142.5 82 75.6
MELO3C006791.2 Cucumis melo HOM05D005231 ORTHO05D006387 6.4e-31 139.8 185 50.3
SEGI_29623 Sequoiadendron giganteum HOM05D006266 ORTHO05D008016 3.5e-29 134.0 98 70.4
CSS0001558 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 3.9e-28 130.6 124 58.1
CSS0004821 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 3.9e-28 130.6 124 58.1
SEGI_11902 Sequoiadendron giganteum HOM05D006266 ORTHO05D008016 1.1e-22 112.5 82 67.1
arahy.Tifrunner.gnm1.ann1.QA6FBH Arachis hypogaea HOM05D006266 ORTHO05D008016 7.1e-14 83.2 56 75.0
Lsat_1_v5_gn_7_84681 Lactuca sativa HOM05D006266 ORTHO05D004407 7.1e-14 83.2 51 72.5
CSS0006121 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 4.1e-09 67.4 34 85.3
CSS0026903 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 5.3e-09 67.0 51 60.8
AUR62006021 Chenopodium quinoa HOM05D001494 ORTHO05D001364 2.0e-08 65.1 42 66.7
Sp4g25500 Schrenkiella parvula HOM05D000001 ORTHO05D000003 1.4e-06 58.9 85 41.2


User provided reference genes

Program Settings