Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3C28T3 Lonicera japonica HOM05D006577 ORTHO05D008428 1.5e-26 123.6 175 100.0
Lj3A8T28 Lonicera japonica HOM05D006577 ORTHO05D008428 8.3e-22 107.8 51 98.0
CSS0014058 Camellia sinensis var. sinensis HOM05D006577 ORTHO05D008428 2.5e-18 96.3 48 89.6
Rhsim11G0036700 Rhododendron simsii HOM05D006577 ORTHO05D008428 4.3e-18 95.5 50 86.0
Phvul.002G121300 Phaseolus vulgaris HOM05D006577 ORTHO05D008428 9.5e-18 94.4 51 88.2
PGR042G0863 Punica granatum HOM05D006577 ORTHO05D008428 1.2e-17 94.0 50 88.0
QL12p004173 Quercus lobata HOM05D006577 ORTHO05D008428 1.6e-17 93.6 51 86.3
Atru.chr8.2629 Acer truncatum HOM05D006577 ORTHO05D008428 2.1e-17 93.2 50 82.0
Oeu046783.1 Olea europaea HOM05D006577 ORTHO05D008428 2.1e-17 93.2 48 85.4
VMungo1215G3406 Vigna mungo HOM05D006577 ORTHO05D008428 2.1e-17 93.2 51 86.3
DCAR_030906 Daucus carota HOM05D006577 ORTHO05D008428 2.8e-17 92.8 51 82.4
GSVIVG01036870001 Vitis vinifera HOM05D006577 ORTHO05D008428 2.8e-17 92.8 49 87.8
Actinidia32789 Actinidia chinensis HOM05D006577 ORTHO05D008428 3.6e-17 92.4 51 86.3
vmacro00091 Vaccinium macrocarpon HOM05D006577 ORTHO05D008428 3.6e-17 92.4 50 84.0
arahy.Tifrunner.gnm1.ann1.0U4NMV Arachis hypogaea HOM05D006577 ORTHO05D008428 6.2e-17 91.7 51 84.3
arahy.Tifrunner.gnm1.ann1.Y0J304 Arachis hypogaea HOM05D006577 ORTHO05D008428 6.2e-17 91.7 51 84.3
MSTRG.1757 Avicennia marina HOM05D006577 ORTHO05D008428 6.2e-17 91.7 46 91.3
Dinv41806 Davidia involucrata HOM05D006577 ORTHO05D008428 6.2e-17 91.7 48 91.7
TWI73G0063 Tripterygium wilfordii HOM05D006577 ORTHO05D008428 1.4e-16 90.5 47 87.2
TAR629G1131 Trochodendron aralioides HOM05D006577 ORTHO05D008428 1.4e-16 90.5 50 80.0
Cpa.g.sc90.36 Carica papaya HOM05D006577 ORTHO05D008428 1.8e-16 90.1 48 81.2
Prupe.1G353400 Prunus persica HOM05D006577 ORTHO05D008428 1.8e-16 90.1 51 80.4
ECA233G0973 Erigeron canadensis HOM05D006577 ORTHO05D008428 3.1e-16 89.4 50 80.0
Nn7g37388 Nelumbo nucifera HOM05D006577 ORTHO05D008428 3.1e-16 89.4 46 87.0
Oeu015543.2 Olea europaea HOM05D006577 ORTHO05D008428 3.1e-16 89.4 48 83.3
Lsat_1_v5_gn_6_17281 Lactuca sativa HOM05D006577 ORTHO05D008428 4.0e-16 89.0 50 80.0
CiPaw.11G075200 Carya illinoinensis HOM05D006577 ORTHO05D008428 5.2e-16 88.6 48 85.4
Eucgr.D02560 Eucalyptus grandis HOM05D006577 ORTHO05D008428 5.2e-16 88.6 48 83.3
Glyma.11G090300 Glycine max HOM05D006577 ORTHO05D008428 5.2e-16 88.6 52 84.6
Sc24g0001520 Simmondsia chinensis HOM05D006577 ORTHO05D008428 5.2e-16 88.6 46 84.8
Gohir.A08G149500 Gossypium hirsutum HOM05D006577 ORTHO05D008428 1.5e-15 87.0 51 80.4
Gohir.D08G170500 Gossypium hirsutum HOM05D006577 ORTHO05D008428 1.5e-15 87.0 51 80.4
Gorai.004G178000 Gossypium raimondii HOM05D006577 ORTHO05D008428 1.5e-15 87.0 51 80.4
Aqoxy7G00896 Aquilegia oxysepala HOM05D006577 ORTHO05D008428 2.0e-15 86.7 52 78.8
PSO675G5955 Papaver somniferum HOM05D006577 ORTHO05D008428 2.0e-15 86.7 48 79.2
PSO502G0007 Papaver somniferum HOM05D006577 ORTHO05D008428 2.6e-15 86.3 48 79.2
Potri.004G236300 Populus trichocarpa HOM05D006577 ORTHO05D008428 2.6e-15 86.3 48 79.2
SEGI_36653 Sequoiadendron giganteum HOM05D006577 ORTHO05D008428 2.6e-15 86.3 52 76.9
HanXRQChr07g0198411 Helianthus annuus HOM05D006577 ORTHO05D008428 3.4e-15 85.9 46 82.6
MD08G1001400 Malus domestica HOM05D006577 ORTHO05D008428 3.4e-15 85.9 49 85.7
Cc08_g05650 Coffea canephora HOM05D006577 ORTHO05D008428 4.4e-15 85.5 48 77.1
Manes.17G000100 Manihot esculenta HOM05D006577 ORTHO05D008428 4.4e-15 85.5 48 81.2
Thecc.03G318900 Theobroma cacao HOM05D006577 ORTHO05D008428 4.4e-15 85.5 48 83.3
CDE01G0285 Ceratophyllum demersum HOM05D006577 ORTHO05D008428 5.8e-15 85.1 46 82.6
Sabra01G0180600 Salix brachista HOM05D006577 ORTHO05D008428 5.8e-15 85.1 48 79.2
COL.COLO4_11282 Corchorus olitorius HOM05D006577 ORTHO05D008428 7.6e-15 84.7 51 78.4
Hund17692 Selenicereus undatus HOM05D006577 ORTHO05D008428 7.6e-15 84.7 51 76.5
Glyma.01G154300 Glycine max HOM05D006577 ORTHO05D008428 9.9e-15 84.3 51 82.4
CDE12G0431 Ceratophyllum demersum HOM05D006577 ORTHO05D008428 1.3e-14 84.0 46 80.4
Zm00001eb227500 Zea mays HOM05D006577 ORTHO05D008428 1.3e-14 84.0 48 77.1
ATR0568G043 Amborella trichopoda HOM05D006577 ORTHO05D008428 1.7e-14 83.6 48 75.0
CsaV3_4G027910 Cucumis sativus L. HOM05D006577 ORTHO05D008428 1.7e-14 83.6 52 78.8
Migut.E01373 Erythranthe guttata HOM05D006577 ORTHO05D008428 1.7e-14 83.6 46 82.6
RcHm_v2.0_Chr6g0304321 Rosa chinensis HOM05D006577 ORTHO05D008428 1.7e-14 83.6 49 83.7
Lj2g0006155 Lotus japonicus HOM05D006577 ORTHO05D008428 2.2e-14 83.2 51 80.4
FvH4_2g37380 Fragaria vesca HOM05D006577 ORTHO05D008428 2.9e-14 82.8 49 83.7
FAN21G2299 Fragaria x ananassa HOM05D006577 ORTHO05D008428 2.9e-14 82.8 49 83.7
FAN27G1697 Fragaria x ananassa HOM05D006577 ORTHO05D008428 2.9e-14 82.8 49 83.7
Lalb_Chr16g0380351 Lupinus albus HOM05D006577 ORTHO05D008428 2.9e-14 82.8 48 81.2
FAN20G0322 Fragaria x ananassa HOM05D006577 ORTHO05D008428 3.7e-14 82.4 49 83.7
Cfa012291 Carpinus fangiana HOM05D000435 ORTHO05D000430 4.9e-14 82.0 43 83.7
Ciclev10011516m.g Citrus clementina HOM05D006577 ORTHO05D008428 4.9e-14 82.0 45 75.6
MELO3C010522.2 Cucumis melo HOM05D006577 ORTHO05D008428 8.4e-14 81.3 49 81.6
FAN21G2282 Fragaria x ananassa HOM05D006577 ORTHO05D011051 8.4e-14 81.3 49 81.6
HPP92_002488 Vanilla planifolia HOM05D006577 ORTHO05D008428 8.4e-14 81.3 50 72.0
Peaxi162Scf00193g00730 Petunia axillaris HOM05D006577 ORTHO05D008428 1.9e-13 80.1 48 77.1
Ah.09g232390 Amaranthus hybridus HOM05D006577 ORTHO05D008428 2.4e-13 79.7 46 80.4
CANSAT35G0698 Cannabis sativa HOM05D006577 ORTHO05D008428 2.4e-13 79.7 52 78.8
FAN21G2462 Fragaria x ananassa HOM05D006577 ORTHO05D011051 3.2e-13 79.3 49 79.6
Haze_08434 Corylus avellana HOM05D006577 ORTHO05D008428 4.1e-13 79.0 48 72.9
Sopen08g024050 Solanum pennellii HOM05D006577 ORTHO05D008428 4.1e-13 79.0 48 77.1
Ca_13135_v3 Cicer arietinum L. HOM05D006577 ORTHO05D008428 5.4e-13 78.6 52 76.9
Nitab4.5_0000030g0480 Nicotiana tabacum HOM05D006577 ORTHO05D008428 5.4e-13 78.6 48 75.0
ClCG11G016060 Citrullus lanatus HOM05D006577 ORTHO05D008428 7.1e-13 78.2 45 80.0
Solyc08g075420.4 Solanum lycopersicum HOM05D006577 ORTHO05D008428 9.2e-13 77.8 48 75.0
THA.LOC104806196 Tarenaya hassleriana HOM05D006577 ORTHO05D008428 9.2e-13 77.8 49 73.5
Aa31LG6G1900 Aethionema arabicum HOM05D006577 ORTHO05D008428 1.2e-12 77.4 47 78.7
CAN.G1026.7 Capsicum annuum HOM05D006577 ORTHO05D008428 1.2e-12 77.4 48 75.0
EL10Ac8g19602 Beta vulgaris HOM05D006577 ORTHO05D008428 1.6e-12 77.0 45 75.6
Nitab4.5_0007095g0010 Nicotiana tabacum HOM05D006577 ORTHO05D008428 2.7e-12 76.3 51 68.6
AUR62030109 Chenopodium quinoa HOM05D006577 ORTHO05D008428 3.5e-12 75.9 58 69.0
Sed0006082 Sechium edule HOM05D006577 ORTHO05D008428 3.5e-12 75.9 49 69.4
AUR62042461 Chenopodium quinoa HOM05D006577 ORTHO05D008428 4.6e-12 75.5 58 69.0
Psat1g131640 Pisum sativum HOM05D006577 ORTHO05D008428 4.6e-12 75.5 50 74.0
Medtr2g040410 Medicago truncatula HOM05D006577 ORTHO05D008428 6.0e-12 75.1 49 77.6
TPR.G29075 Trifolium pratense HOM05D006577 ORTHO05D008428 6.0e-12 75.1 50 76.0
AL7G34890 Arabidopsis lyrata HOM05D006577 ORTHO05D008428 1.3e-11 73.9 48 70.8
Sp7g17900 Schrenkiella parvula HOM05D006577 ORTHO05D008428 1.3e-11 73.9 48 70.8
BcaC09g51429 Brassica carinata HOM05D006577 ORTHO05D008428 1.7e-11 73.6 48 70.8
A01p11160 Brassica napus HOM05D006577 ORTHO05D008428 1.7e-11 73.6 48 70.8
C01p13200 Brassica napus HOM05D006577 ORTHO05D008428 1.7e-11 73.6 48 70.8
BolC1t01294H Brassica oleracea HOM05D006577 ORTHO05D008428 1.7e-11 73.6 48 70.8
BraA01t01062Z Brassica rapa HOM05D006577 ORTHO05D008428 1.7e-11 73.6 48 70.8
AT4G19190 Arabidopsis thaliana HOM05D006577 ORTHO05D008428 2.3e-11 73.2 48 68.8
Thhalv10024821m.g Eutrema salsugineum HOM05D006577 ORTHO05D008428 5.1e-11 72.0 45 73.3
SMO172G0042 Selaginella moellendorffii HOM05D006577 ORTHO05D008428 8.6e-11 71.2 52 63.5
CARHR226070 Cardamine hirsuta HOM05D006577 ORTHO05D008428 1.1e-10 70.9 50 68.0
FAN21G2626 Fragaria x ananassa HOM05D006577 ORTHO05D011051 1.1e-10 70.9 49 77.6
Carub.0007s2195 Capsella rubella HOM05D006577 ORTHO05D008428 3.3e-10 69.3 48 66.7
unitig_37.g12910 Utricularia gibba HOM05D006577 ORTHO05D008428 6.2e-09 65.1 50 60.0
Mapoly0190s0006 Marchantia polymorpha HOM05D006577 ORTHO05D008428 3.1e-08 62.8 53 56.6
Pp3c3_31660 Physcomitrium patens HOM05D006577 ORTHO05D008428 3.1e-08 62.8 61 52.5
CARHR123800 Cardamine hirsuta HOM05D006577 ORTHO05D008428 9.9e-07 57.8 28 89.3
CBR_g50314 Chara braunii HOM05D006577 ORTHO05D008428 9.9e-07 57.8 29 82.8
FvH4_3g03932 Fragaria vesca HOM05D006577 ORTHO05D008428 4.9e-06 55.5 28 89.3
BcaB08g35318 Brassica carinata HOM05D006577 ORTHO05D008428 6.4e-06 55.1 28 82.1


User provided reference genes

Program Settings