Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3C241T8 Lonicera japonica HOM05D001890 ORTHO05D008163 1.7e-63 245.7 119 100.0
Lj3C241T9 Lonicera japonica HOM05D001890 ORTHO05D008163 6.0e-40 167.5 118 72.9
Dinv11885 Davidia involucrata HOM05D001890 ORTHO05D008163 1.1e-20 103.6 121 51.2
Actinidia03972 Actinidia chinensis HOM05D001890 ORTHO05D008163 8.5e-18 94.0 117 42.7
Actinidia03864 Actinidia chinensis HOM05D001890 ORTHO05D008163 3.6e-16 88.6 118 41.5
GSVIVG01022555001 Vitis vinifera HOM05D001890 ORTHO05D008163 3.6e-16 88.6 119 47.1
Haze_20108 Corylus avellana HOM05D001890 ORTHO05D008163 6.7e-15 84.3 123 45.5
Atru.chr8.1300 Acer truncatum HOM05D001890 ORTHO05D008163 1.5e-14 83.2 121 42.1
Manes.08G036100 Manihot esculenta HOM05D001890 ORTHO05D008163 2.0e-14 82.8 121 42.1
COL.COLO4_29517 Corchorus olitorius HOM05D001890 ORTHO05D008163 4.8e-13 78.2 120 41.7
Cpa.g.sc104.2 Carica papaya HOM05D001890 ORTHO05D008163 8.2e-13 77.4 117 41.9
DCAR_013451 Daucus carota HOM05D001890 ORTHO05D008163 1.1e-12 77.0 118 42.4
Potri.006G200900 Populus trichocarpa HOM05D001890 ORTHO05D008163 1.4e-12 76.6 122 38.5
CANSAT64G1416 Cannabis sativa HOM05D001890 ORTHO05D008163 4.1e-12 75.1 108 42.6
Actinidia37766 Actinidia chinensis HOM05D001890 ORTHO05D008163 5.3e-12 74.7 82 45.1
Ciclev10012448m.g Citrus clementina HOM05D001890 ORTHO05D008163 5.3e-12 74.7 121 39.7
Dinv25069 Davidia involucrata HOM05D001890 ORTHO05D003442 9.1e-12 73.9 87 48.3
Sabra06G0154600 Salix brachista HOM05D001890 ORTHO05D008163 9.1e-12 73.9 123 40.7
Thecc.05G108500 Theobroma cacao HOM05D001890 ORTHO05D008163 4.5e-11 71.6 120 40.0
Lsat_1_v5_gn_6_34681 Lactuca sativa HOM05D001890 ORTHO05D008163 5.9e-11 71.2 119 34.5
Oeu045017.1 Olea europaea HOM05D001890 ORTHO05D008163 5.9e-11 71.2 136 41.2
RcHm_v2.0_Chr3g0476781 Rosa chinensis HOM05D001890 ORTHO05D008163 5.9e-11 71.2 55 60.0
PGR004G2365 Punica granatum HOM05D001890 ORTHO05D008163 1.3e-10 70.1 119 37.8
MD12G1044000 Malus domestica HOM05D001890 ORTHO05D008163 1.7e-10 69.7 124 39.5
MELO3C009561.2 Cucumis melo HOM05D001890 ORTHO05D008163 2.2e-10 69.3 110 43.6
ClCG10G018120 Citrullus lanatus HOM05D001890 ORTHO05D008163 2.9e-10 68.9 111 45.9
Sed0014416 Sechium edule HOM05D001890 ORTHO05D008163 2.9e-10 68.9 123 36.6
TWI74G0853 Tripterygium wilfordii HOM05D001890 ORTHO05D008163 5.0e-10 68.2 113 41.6
THA.LOC104816627 Tarenaya hassleriana HOM05D001890 ORTHO05D008163 1.4e-09 66.6 116 39.7
Cc06_g06850 Coffea canephora HOM05D001890 ORTHO05D008163 1.9e-09 66.2 106 41.5
CsaV3_3G038180 Cucumis sativus L. HOM05D001890 ORTHO05D008163 1.9e-09 66.2 110 41.8
Migut.J00743 Erythranthe guttata HOM05D001890 ORTHO05D008163 1.9e-09 66.2 146 34.9
PSO170G4460 Papaver somniferum HOM05D001890 ORTHO05D008163 1.9e-09 66.2 119 39.5
QL07p026864 Quercus lobata HOM05D001890 ORTHO05D008163 1.9e-09 66.2 89 43.8
vmacro07500 Vaccinium macrocarpon HOM05D001890 ORTHO05D008163 1.9e-09 66.2 121 38.0
Nitab4.5_0009788g0030 Nicotiana tabacum HOM05D001890 ORTHO05D008163 3.2e-09 65.5 124 36.3
TAR369G0922 Trochodendron aralioides HOM05D001890 ORTHO05D008163 3.2e-09 65.5 84 44.0
HanXRQChr02g0053101 Helianthus annuus HOM05D001890 ORTHO05D008163 4.2e-09 65.1 122 35.2
Aqoxy1G01947 Aquilegia oxysepala HOM05D001890 ORTHO05D008163 5.5e-09 64.7 102 43.1
FAN05G2088 Fragaria x ananassa HOM05D001890 ORTHO05D008163 5.5e-09 64.7 49 53.1
FAN14G3769 Fragaria x ananassa HOM05D001890 ORTHO05D008163 7.2e-09 64.3 117 34.2
Lalb_Chr06g0173221 Lupinus albus HOM05D001890 ORTHO05D008163 7.2e-09 64.3 120 38.3
VMungo0251G0199 Vigna mungo HOM05D001890 ORTHO05D008163 7.2e-09 64.3 117 36.8
Peaxi162Scf00767g00522 Petunia axillaris HOM05D001890 ORTHO05D008163 9.4e-09 63.9 54 55.6
arahy.Tifrunner.gnm1.ann1.59XBIZ Arachis hypogaea HOM05D001890 ORTHO05D008163 1.2e-08 63.5 97 38.1
MD14G1043000 Malus domestica HOM05D001890 ORTHO05D008163 1.2e-08 63.5 121 40.5
PSO407G0155 Papaver somniferum HOM05D001890 ORTHO05D008163 1.6e-08 63.2 117 37.6
Rhsim03G0062200 Rhododendron simsii HOM05D001890 ORTHO05D008163 1.6e-08 63.2 122 36.9
EL10Ac5g11823 Beta vulgaris HOM05D001890 ORTHO05D008163 2.1e-08 62.8 112 35.7
A03p02720 Brassica napus HOM05D001890 ORTHO05D008163 2.1e-08 62.8 55 52.7
BraA10t45037Z Brassica rapa HOM05D001890 ORTHO05D008163 2.1e-08 62.8 107 37.4
Lj5g0002159 Lotus japonicus HOM05D001890 ORTHO05D008163 2.1e-08 62.8 61 47.5
CiPaw.09G022900 Carya illinoinensis HOM05D001890 ORTHO05D008163 2.7e-08 62.4 48 56.2
Prupe.7G091100 Prunus persica HOM05D001890 ORTHO05D008163 2.7e-08 62.4 120 40.0
BraA03t09635Z Brassica rapa HOM05D001890 ORTHO05D008163 3.6e-08 62.0 109 36.7
Glyma.02G193000 Glycine max HOM05D001890 ORTHO05D008163 3.6e-08 62.0 123 34.1
Glyma.10G083800 Glycine max HOM05D001890 ORTHO05D008163 3.6e-08 62.0 122 34.4
Psat2g142840 Pisum sativum HOM05D001890 ORTHO05D008163 3.6e-08 62.0 59 47.5
Nitab4.5_0005218g0010 Nicotiana tabacum HOM05D001890 ORTHO05D008163 4.7e-08 61.6 53 54.7
FAN02G4586 Fragaria x ananassa HOM05D001890 ORTHO05D003442 6.1e-08 61.2 49 53.1
Oeu020166.1 Olea europaea HOM05D001890 ORTHO05D008163 6.1e-08 61.2 45 60.0
Phvul.007G266300 Phaseolus vulgaris HOM05D001890 ORTHO05D008163 7.9e-08 60.8 119 37.0
MSTRG.19331 Avicennia marina HOM05D001890 ORTHO05D008163 1.0e-07 60.5 146 33.6
SHI39226 Sapria himalayana HOM05D001890 ORTHO05D008163 1.0e-07 60.5 104 30.8
SGA_v2.0_scaffold116G32259 Striga asiatica HOM05D001890 ORTHO05D008163 1.0e-07 60.5 136 33.8
FvH4_6g20780 Fragaria vesca HOM05D001890 ORTHO05D008163 1.4e-07 60.1 118 33.9
FAN09G2968 Fragaria x ananassa HOM05D001890 ORTHO05D008163 1.4e-07 60.1 49 51.0
Nn2g14391 Nelumbo nucifera HOM05D001890 ORTHO05D008163 1.4e-07 60.1 87 41.4
Psat6g128200 Pisum sativum HOM05D001890 ORTHO05D008163 1.4e-07 60.1 53 50.9
Solyc01g006860.3 Solanum lycopersicum HOM05D001890 ORTHO05D008163 1.4e-07 60.1 54 53.7
PGSC0003DMG400021337 Solanum tuberosum HOM05D001890 ORTHO05D008163 2.3e-07 59.3 127 36.2
Gohir.A01G200100 Gossypium hirsutum HOM05D001890 ORTHO05D008163 3.0e-07 58.9 120 39.2
Sopen01g002850 Solanum pennellii HOM05D001890 ORTHO05D008163 3.0e-07 58.9 54 51.9
BolC3t12860H Brassica oleracea HOM05D001890 ORTHO05D003442 3.9e-07 58.5 108 31.5
C03p03150 Brassica napus HOM05D001890 ORTHO05D003442 5.1e-07 58.2 107 32.7
Gorai.002G233900 Gossypium raimondii HOM05D001890 ORTHO05D008163 5.1e-07 58.2 120 39.2
Psat1g223560 Pisum sativum HOM05D001890 ORTHO05D008163 5.1e-07 58.2 59 45.8
Medtr1g055300 Medicago truncatula HOM05D001890 ORTHO05D008163 6.7e-07 57.8 36 61.1
BcaB01g05992 Brassica carinata HOM05D001890 ORTHO05D008163 8.8e-07 57.4 107 31.8
arahy.Tifrunner.gnm1.ann1.XW59SW Arachis hypogaea HOM05D001890 ORTHO05D008163 1.1e-06 57.0 123 34.1
MBI05_g37895_MAGBIO Magnolia biondii HOM05D001890 ORTHO05D008163 1.1e-06 57.0 55 50.9
Sp6g36440 Schrenkiella parvula HOM05D001890 ORTHO05D008163 1.1e-06 57.0 52 50.0
BolC9t59784H Brassica oleracea HOM05D001890 ORTHO05D008163 1.5e-06 56.6 53 43.4
CARHR207150 Cardamine hirsuta HOM05D001890 ORTHO05D008163 2.6e-06 55.8 61 49.2
Aa31LG5G17190 Aethionema arabicum HOM05D001890 ORTHO05D008163 3.3e-06 55.5 36 52.8
Gohir.D01G190200 Gossypium hirsutum HOM05D001890 ORTHO05D008163 3.3e-06 55.5 120 38.3
SGA_v2.0_scaffold18G08441 Striga asiatica HOM05D001890 ORTHO05D008163 3.3e-06 55.5 151 30.5
ATR0697G265 Amborella trichopoda HOM05D001890 ORTHO05D008163 5.7e-06 54.7 66 47.0
Eucgr.A02558 Eucalyptus grandis HOM05D001890 ORTHO05D008163 5.7e-06 54.7 125 32.8
TPR.G21244 Trifolium pratense HOM05D001890 ORTHO05D003442 7.4e-06 54.3 36 55.6
unitig_578.g15805 Utricularia gibba HOM05D001890 ORTHO05D008163 7.4e-06 54.3 126 36.5


User provided reference genes

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