Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3C238T3 Lonicera japonica HOM05D000246 ORTHO05D005907 7.1e-184 647.1 327 100.0
Lj3C235G1 Lonicera japonica HOM05D000246 ORTHO05D005907 3.3e-181 638.3 325 99.1
Dinv22710 Davidia involucrata HOM05D000246 ORTHO05D005907 3.9e-174 614.8 325 95.1
Manes.01G119800 Manihot esculenta HOM05D000246 ORTHO05D005907 2.5e-173 612.1 324 93.8
Hma1.2p1_3184F.1_g333720 Hydrangea macrophylla HOM05D000246 ORTHO05D005907 4.3e-173 611.3 318 95.6
GSVIVG01031659001 Vitis vinifera HOM05D000246 ORTHO05D005907 7.4e-173 610.5 325 94.2
Prupe.1G177100 Prunus persica HOM05D000246 ORTHO05D005907 1.3e-172 609.8 325 94.5
TWI09G0257 Tripterygium wilfordii HOM05D000246 ORTHO05D005907 2.2e-172 609.0 319 94.7
Manes.02G078000 Manihot esculenta HOM05D000246 ORTHO05D005907 6.3e-172 607.4 321 93.8
MBI07_g06132_MAGBIO Magnolia biondii HOM05D000246 ORTHO05D005907 1.1e-171 606.7 318 95.0
MD04G1027700 Malus domestica HOM05D000246 ORTHO05D005907 1.4e-171 606.3 322 93.5
DCAR_004354 Daucus carota HOM05D000246 ORTHO05D005907 3.1e-171 605.1 320 94.1
RcHm_v2.0_Chr4g0410381 Rosa chinensis HOM05D000246 ORTHO05D005907 6.9e-171 604.0 325 93.2
Peaxi162Scf00378g00062 Petunia axillaris HOM05D000246 ORTHO05D005907 2.0e-170 602.4 323 92.3
TWI53G1869 Tripterygium wilfordii HOM05D000246 ORTHO05D005907 3.4e-170 601.7 318 93.4
DCAR_001263 Daucus carota HOM05D000246 ORTHO05D005907 5.9e-170 600.9 315 94.9
Thecc.04G186400 Theobroma cacao HOM05D000246 ORTHO05D005907 5.9e-170 600.9 325 92.3
Gorai.009G351400 Gossypium raimondii HOM05D000246 ORTHO05D005907 1.0e-169 600.1 322 92.9
Eucgr.H00462 Eucalyptus grandis HOM05D000246 ORTHO05D005907 1.3e-169 599.7 325 91.4
Gohir.D05G327500 Gossypium hirsutum HOM05D000246 ORTHO05D005907 1.3e-169 599.7 322 92.9
Actinidia35924 Actinidia chinensis HOM05D000246 ORTHO05D005907 1.7e-169 599.4 325 92.6
ClCG07G015740 Citrullus lanatus HOM05D000246 ORTHO05D005907 1.7e-169 599.4 325 92.3
Aqoxy2G04069 Aquilegia oxysepala HOM05D000246 ORTHO05D005907 3.8e-169 598.2 326 92.0
CiPaw.01G109200 Carya illinoinensis HOM05D000246 ORTHO05D005907 3.8e-169 598.2 317 93.4
CsaV3_4G003350 Cucumis sativus L. HOM05D000246 ORTHO05D005907 6.5e-169 597.4 325 91.7
Migut.N00444 Erythranthe guttata HOM05D000246 ORTHO05D005907 6.5e-169 597.4 321 92.2
Glyma.02G097300 Glycine max HOM05D000246 ORTHO05D005907 6.5e-169 597.4 326 92.0
PGSC0003DMG400004583 Solanum tuberosum HOM05D000246 ORTHO05D005907 6.5e-169 597.4 320 92.8
Cc03_g10680 Coffea canephora HOM05D000246 ORTHO05D005907 8.5e-169 597.0 318 92.1
Nitab4.5_0012487g0010 Nicotiana tabacum HOM05D000246 ORTHO05D005907 8.5e-169 597.0 321 92.8
Lsat_1_v5_gn_6_71461 Lactuca sativa HOM05D000246 ORTHO05D005907 1.4e-168 596.3 326 91.7
Gorai.006G227100 Gossypium raimondii HOM05D000246 ORTHO05D005907 3.2e-168 595.1 325 90.8
Potri.014G147100 Populus trichocarpa HOM05D000246 ORTHO05D005907 3.2e-168 595.1 328 90.2
Sopen12g033430 Solanum pennellii HOM05D000246 ORTHO05D005907 3.2e-168 595.1 320 92.2
Lalb_Chr10g0092081 Lupinus albus HOM05D000246 ORTHO05D005907 4.2e-168 594.7 325 91.1
Phvul.008G017300 Phaseolus vulgaris HOM05D000246 ORTHO05D005907 5.5e-168 594.3 325 91.7
Solyc09g098280.3 Solanum lycopersicum HOM05D000246 ORTHO05D005907 5.5e-168 594.3 326 91.7
PGSC0003DMG400021629 Solanum tuberosum HOM05D000246 ORTHO05D005907 5.5e-168 594.3 326 91.7
Haze_11715 Corylus avellana HOM05D000246 ORTHO05D005907 7.2e-168 594.0 322 91.9
Glyma.18G284200 Glycine max HOM05D000246 ORTHO05D005907 7.2e-168 594.0 325 92.0
Gohir.D09G203200 Gossypium hirsutum HOM05D000246 ORTHO05D005907 7.2e-168 594.0 325 90.5
VMungo1383G1353 Vigna mungo HOM05D000246 ORTHO05D005907 7.2e-168 594.0 325 91.4
Cfa008706 Carpinus fangiana HOM05D000246 ORTHO05D005907 9.4e-168 593.6 322 91.9
MSTRG.21977 Avicennia marina HOM05D000246 ORTHO05D005907 1.2e-167 593.2 321 91.3
Ca_07120_v3 Cicer arietinum L. HOM05D000246 ORTHO05D005907 1.2e-167 593.2 325 90.5
Gohir.A09G209800 Gossypium hirsutum HOM05D000246 ORTHO05D005907 1.2e-167 593.2 325 90.5
Nn1g09763 Nelumbo nucifera HOM05D000246 ORTHO05D005907 1.2e-167 593.2 318 92.1
Sopen09g036210 Solanum pennellii HOM05D000246 ORTHO05D005907 1.2e-167 593.2 326 91.4
Cpa.g.sc53.167 Carica papaya HOM05D000246 ORTHO05D005907 1.6e-167 592.8 315 93.0
QL06p027657 Quercus lobata HOM05D000246 ORTHO05D005907 2.1e-167 592.4 317 92.7
Lsat_1_v5_gn_6_32061 Lactuca sativa HOM05D000246 ORTHO05D005907 2.7e-167 592.0 319 92.5
Lj1g0023209 Lotus japonicus HOM05D000246 ORTHO05D005907 2.7e-167 592.0 325 91.1
Nitab4.5_0000978g0210 Nicotiana tabacum HOM05D000246 ORTHO05D005907 2.7e-167 592.0 320 90.6
Sed0019749 Sechium edule HOM05D000246 ORTHO05D005907 4.6e-167 591.3 325 91.1
Psat3g188360 Pisum sativum HOM05D000246 ORTHO05D005907 7.9e-167 590.5 325 89.8
EL10Ac3g07395 Beta vulgaris HOM05D000246 ORTHO05D005907 1.0e-166 590.1 322 91.0
PGR142G3194 Punica granatum HOM05D000246 ORTHO05D005907 1.0e-166 590.1 318 90.9
PSO675G5278 Papaver somniferum HOM05D000246 ORTHO05D005907 1.4e-166 589.7 325 89.8
Sed0019335 Sechium edule HOM05D000246 ORTHO05D005907 1.4e-166 589.7 325 90.8
Nitab4.5_0006519g0040 Nicotiana tabacum HOM05D000246 ORTHO05D005907 1.8e-166 589.3 320 90.3
PSO017G6996 Papaver somniferum HOM05D000246 ORTHO05D005907 3.0e-166 588.6 325 89.5
Sc19g0007630 Simmondsia chinensis HOM05D000246 ORTHO05D005907 3.9e-166 588.2 325 90.2
Lalb_Chr25g0284231 Lupinus albus HOM05D000246 ORTHO05D005907 6.7e-166 587.4 325 90.2
Medtr7g021870 Medicago truncatula HOM05D000246 ORTHO05D005907 6.7e-166 587.4 325 89.5
CANSAT78G0915 Cannabis sativa HOM05D000246 ORTHO05D005907 1.5e-165 586.3 318 91.2
Sabra14G0110400 Salix brachista HOM05D000246 ORTHO05D005907 1.5e-165 586.3 323 90.4
Hund24461 Selenicereus undatus HOM05D000246 ORTHO05D005907 1.5e-165 586.3 326 89.9
FAN17G0846 Fragaria x ananassa HOM05D000246 ORTHO05D005907 2.0e-165 585.9 327 89.6
FvH4_4g12310 Fragaria vesca HOM05D000246 ORTHO05D005907 5.7e-165 584.3 327 89.3
FAN12G0598 Fragaria x ananassa HOM05D000246 ORTHO05D005907 5.7e-165 584.3 327 89.3
arahy.Tifrunner.gnm1.ann1.13067A Arachis hypogaea HOM05D000246 ORTHO05D005907 7.4e-165 583.9 325 89.8
arahy.Tifrunner.gnm1.ann1.N8MPD0 Arachis hypogaea HOM05D000246 ORTHO05D005907 7.4e-165 583.9 325 89.8
arahy.Tifrunner.gnm1.ann1.P7X33L Arachis hypogaea HOM05D000246 ORTHO05D005907 7.4e-165 583.9 325 89.8
Potri.002G233500 Populus trichocarpa HOM05D000246 ORTHO05D005907 2.2e-164 582.4 323 88.9
Atru.chr3.1829 Acer truncatum HOM05D000246 ORTHO05D005907 2.8e-164 582.0 320 91.2
CDE05G2302 Ceratophyllum demersum HOM05D000246 ORTHO05D005907 6.3e-164 580.9 319 88.4
FAN07G2572 Fragaria x ananassa HOM05D000246 ORTHO05D005907 6.3e-164 580.9 327 88.7
FAN22G2422 Fragaria x ananassa HOM05D000246 ORTHO05D005907 6.3e-164 580.9 328 88.4
AUR62020934 Chenopodium quinoa HOM05D000246 ORTHO05D005907 8.2e-164 580.5 316 91.1
HanXRQChr10g0290061 Helianthus annuus HOM05D000246 ORTHO05D005907 8.2e-164 580.5 326 89.6
Ciclev10005378m.g Citrus clementina HOM05D000246 ORTHO05D005907 1.4e-163 579.7 325 88.3
FAN12G1501 Fragaria x ananassa HOM05D000246 ORTHO05D005907 1.4e-163 579.7 322 90.1
Rhsim09G0037600 Rhododendron simsii HOM05D000246 ORTHO05D005907 2.4e-163 578.9 338 87.0
unitig_578.g16351 Utricularia gibba HOM05D000246 ORTHO05D005907 4.1e-163 578.2 325 88.3
ATR1147G030 Amborella trichopoda HOM05D000246 ORTHO05D005907 2.6e-162 575.5 313 90.1
SalBow6G1195 Salvia bowleyana HOM05D000246 ORTHO05D005907 5.0e-161 571.2 363 80.7
THA.LOC104819306 Tarenaya hassleriana HOM05D000246 ORTHO05D005907 5.5e-160 567.8 318 87.1
HPP92_006214 Vanilla planifolia HOM05D000246 ORTHO05D005907 5.5e-160 567.8 321 87.2
Dinv44209 Davidia involucrata HOM05D000246 ORTHO05D005907 2.7e-159 565.5 325 89.8
CAN.G710.44 Capsicum annuum HOM05D000246 ORTHO05D005907 4.7e-159 564.7 295 94.2
CDE05G0298 Ceratophyllum demersum HOM05D000246 ORTHO05D005907 4.7e-159 564.7 319 86.5
THA.LOC104809592 Tarenaya hassleriana HOM05D000246 ORTHO05D005907 3.3e-157 558.5 318 85.5
Thhalv10008134m.g Eutrema salsugineum HOM05D000246 ORTHO05D005907 7.4e-157 557.4 319 85.6
SGA_v2.0_scaffold178G39529 Striga asiatica HOM05D000246 ORTHO05D005907 7.4e-157 557.4 295 92.5
Sp1g09540 Schrenkiella parvula HOM05D000246 ORTHO05D005907 9.7e-157 557.0 319 85.6
Aa31LG1G4010 Aethionema arabicum HOM05D000246 ORTHO05D005907 1.3e-156 556.6 319 85.3
Carub.0001s1038 Capsella rubella HOM05D000246 ORTHO05D005907 2.8e-156 555.4 323 85.1
A08p33760 Brassica napus HOM05D000246 ORTHO05D005907 3.7e-156 555.1 319 84.6
BraA08t35292Z Brassica rapa HOM05D000246 ORTHO05D005907 6.3e-156 554.3 316 85.8
BraA09t41822Z Brassica rapa HOM05D000246 ORTHO05D005907 6.3e-156 554.3 316 85.4
AT1G10840 Arabidopsis thaliana HOM05D000246 ORTHO05D005907 8.2e-156 553.9 319 85.3
BolC8t52387H Brassica oleracea HOM05D000246 ORTHO05D005907 1.4e-155 553.1 316 85.1
BcaC05g24965 Brassica carinata HOM05D000246 ORTHO05D005907 1.8e-155 552.7 319 84.6
BcaC07g38630 Brassica carinata HOM05D000246 ORTHO05D005396 1.8e-155 552.7 316 85.1
Os04g0376500 Oryza sativa ssp. japonica HOM05D000246 ORTHO05D005907 1.8e-155 552.7 317 85.2
A06p07620 Brassica napus HOM05D000246 ORTHO05D005907 3.1e-155 552.0 316 85.1
C08p48480 Brassica napus HOM05D000246 ORTHO05D005907 3.1e-155 552.0 316 84.8
BraA06t23964Z Brassica rapa HOM05D000246 ORTHO05D005907 3.1e-155 552.0 316 85.1
AL1G21780 Arabidopsis lyrata HOM05D000246 ORTHO05D005907 4.1e-155 551.6 319 84.6
A09p64720 Brassica napus HOM05D000246 ORTHO05D005907 5.3e-155 551.2 317 84.9
BcaC07g38591 Brassica carinata HOM05D000246 ORTHO05D005907 7.0e-155 550.8 319 84.6
C05p09210 Brassica napus HOM05D000246 ORTHO05D005907 1.2e-154 550.1 319 84.0
BolC8t49032H Brassica oleracea HOM05D000246 ORTHO05D005907 1.2e-154 550.1 316 85.1
BcaNung06200 Brassica carinata HOM05D000246 ORTHO05D005907 1.0e-153 547.0 310 84.8
BolC5t29661H Brassica oleracea HOM05D000246 ORTHO05D005907 1.3e-153 546.6 314 85.0
CARHR011060 Cardamine hirsuta HOM05D000246 ORTHO05D005907 1.7e-153 546.2 319 84.3
Nitab4.5_0001526g0070 Nicotiana tabacum HOM05D000246 ORTHO05D005907 6.5e-153 544.3 326 85.9
Zm00001eb420800 Zea mays HOM05D000246 ORTHO05D005907 2.5e-152 542.3 317 83.9
Mapoly0149s0014 Marchantia polymorpha HOM05D000246 ORTHO05D005907 4.2e-152 541.6 329 78.7
SMO201G0006 Selaginella moellendorffii HOM05D000246 ORTHO05D005907 4.7e-151 538.1 329 79.3
Duzib268G0303 Durio zibethinus HOM05D000246 ORTHO05D005907 1.5e-149 533.1 325 84.3
vmacro00560 Vaccinium macrocarpon HOM05D000246 ORTHO05D005907 4.8e-148 528.1 403 71.5
SEGI_02915 Sequoiadendron giganteum HOM05D000246 ORTHO05D005907 8.2e-148 527.3 323 78.9
Oeu034474.1 Olea europaea HOM05D000246 ORTHO05D005907 1.8e-147 526.2 364 76.4
Pp3c6_17230 Physcomitrium patens HOM05D000246 ORTHO05D005907 9.1e-147 523.9 320 79.1
Pp3c25_2440 Physcomitrium patens HOM05D000246 ORTHO05D005907 4.5e-146 521.5 320 78.8
TPR.G2903 Trifolium pratense HOM05D000246 ORTHO05D005907 2.5e-144 515.8 295 86.8
TAR365G1195 Trochodendron aralioides HOM05D000246 ORTHO05D005907 2.1e-143 512.7 262 97.7
Hma1.2p1_1025F.1_g249250 Hydrangea macrophylla HOM05D000246 ORTHO05D005907 4.0e-142 508.4 262 97.3
Hma1.2p1_3184F.1_g333715 Hydrangea macrophylla HOM05D000246 ORTHO05D005907 4.0e-142 508.4 262 97.3
C08p13990 Brassica napus HOM05D000246 ORTHO05D005907 9.7e-141 503.8 314 80.6
CSS0028322 Camellia sinensis var. sinensis HOM05D000246 ORTHO05D005907 1.5e-136 490.0 257 94.2
Nn7g38282 Nelumbo nucifera HOM05D000246 ORTHO05D005907 1.6e-135 486.5 318 80.5
CBR_g23450 Chara braunii HOM05D000246 ORTHO05D005907 1.3e-132 476.9 306 74.5
COL.COLO4_08082 Corchorus olitorius HOM05D000246 ORTHO05D005907 1.0e-126 457.2 325 74.8
Duzib151G0358 Durio zibethinus HOM05D000246 ORTHO05D005907 3.4e-125 452.2 325 74.2
ECA238G0367 Erigeron canadensis HOM05D000246 ORTHO05D005907 3.2e-123 445.7 237 92.0
Ciclev10033395m.g Citrus clementina HOM05D000246 ORTHO05D005907 4.4e-117 425.2 327 66.7
Zm00001eb420740 Zea mays HOM05D000246 ORTHO05D005907 6.6e-113 411.4 234 85.0
AagrBONN_evm.TU.Sc2ySwM_344.209 Anthoceros agrestis HOM05D000246 ORTHO05D005907 2.5e-112 409.5 248 79.4
PRCOL_00002009 Prasinoderma coloniale HOM05D000246 ORTHO05D005907 1.4e-110 403.7 298 64.1
AUR62018486 Chenopodium quinoa HOM05D000246 ORTHO05D005907 2.9e-108 396.0 234 84.2
MELO3C017707.2 Cucumis melo HOM05D000246 ORTHO05D005907 1.6e-103 380.2 202 92.1
MCO05G711 Micromonas commoda HOM05D000246 ORTHO05D005907 8.9e-102 374.4 323 59.4
Cre16.g676314 Chlamydomonas reinhardtii HOM05D000246 ORTHO05D005907 9.2e-99 364.4 299 58.5
SHI25257 Sapria himalayana HOM05D000246 ORTHO05D005907 5.7e-56 222.2 128 85.9
Pp3c25_2670 Physcomitrium patens HOM05D000246 ORTHO05D005907 5.0e-44 182.6 163 61.3
Actinidia32962 Actinidia chinensis HOM05D000246 ORTHO05D052905 1.9e-35 154.1 180 54.4
PSO675G6425 Papaver somniferum HOM05D000246 ORTHO05D005907 4.4e-32 142.9 79 87.3
Dinv10886 Davidia involucrata HOM05D000246 ORTHO05D005907 2.6e-29 133.7 80 81.2
Dinv10847 Davidia involucrata HOM05D000246 ORTHO05D005907 3.2e-27 126.7 73 84.9
AagrBONN_evm.TU.Sc2ySwM_362.466 Anthoceros agrestis HOM05D000246 ORTHO05D075151 4.2e-27 126.3 74 82.4
COL.COLO4_30406 Corchorus olitorius HOM05D000246 ORTHO05D005907 1.0e-20 105.1 110 57.3
FAN20G1849 Fragaria x ananassa HOM05D000246 ORTHO05D209582 2.6e-16 90.5 51 84.3
Medtr7g064210 Medicago truncatula HOM05D000076 ORTHO05D036729 2.0e-13 80.9 99 48.5
Medtr2g022940 Medicago truncatula HOM05D000871 ORTHO05D036729 6.6e-12 75.9 98 49.0
VMungo0331G1529 Vigna mungo HOM05D000246 ORTHO05D436255 1.1e-11 75.1 42 81.0
HanXRQChr07g0191211 Helianthus annuus HOM05D000246 ORTHO05D224049 2.1e-10 70.9 60 63.3
HanXRQChr10g0296701 Helianthus annuus HOM05D000246 ORTHO05D221073 2.1e-10 70.9 60 63.3
AagrBONN_evm.TU.Sc2ySwM_362.465 Anthoceros agrestis HOM05D000246 ORTHO05D076687 4.7e-10 69.7 100 42.0
MELO3C032112.2 Cucumis melo HOM05D000002 ORTHO05D000001 1.4e-06 58.2 125 36.0


User provided reference genes

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