Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3C235G1 Lonicera japonica HOM05D000246 ORTHO05D005907 1.4e-190 669.5 339 100.0
Dinv22710 Davidia involucrata HOM05D000246 ORTHO05D005907 1.4e-182 642.9 339 95.6
GSVIVG01031659001 Vitis vinifera HOM05D000246 ORTHO05D005907 6.9e-182 640.6 339 95.0
Lj3C238T3 Lonicera japonica HOM05D000246 ORTHO05D005907 5.9e-181 637.5 325 99.1
Prupe.1G177100 Prunus persica HOM05D000246 ORTHO05D005907 5.9e-181 637.5 339 95.0
Hma1.2p1_3184F.1_g333720 Hydrangea macrophylla HOM05D000246 ORTHO05D005907 7.6e-181 637.1 330 96.4
Manes.01G119800 Manihot esculenta HOM05D000246 ORTHO05D005907 7.6e-181 637.1 338 94.1
DCAR_004354 Daucus carota HOM05D000246 ORTHO05D005907 1.0e-180 636.7 334 95.2
TWI09G0257 Tripterygium wilfordii HOM05D000246 ORTHO05D005907 2.9e-180 635.2 331 95.2
MD04G1027700 Malus domestica HOM05D000246 ORTHO05D005907 5.0e-180 634.4 336 94.0
MBI07_g06132_MAGBIO Magnolia biondii HOM05D000246 ORTHO05D005907 6.5e-180 634.0 332 95.2
Peaxi162Scf00378g00062 Petunia axillaris HOM05D000246 ORTHO05D005907 1.4e-179 632.9 337 93.2
Manes.02G078000 Manihot esculenta HOM05D000246 ORTHO05D005907 1.9e-179 632.5 335 94.0
RcHm_v2.0_Chr4g0410381 Rosa chinensis HOM05D000246 ORTHO05D005907 3.2e-179 631.7 339 93.8
TWI53G1869 Tripterygium wilfordii HOM05D000246 ORTHO05D005907 7.2e-179 630.6 331 94.0
Actinidia35924 Actinidia chinensis HOM05D000246 ORTHO05D005907 2.7e-178 628.6 339 93.5
CiPaw.01G109200 Carya illinoinensis HOM05D000246 ORTHO05D005907 2.7e-178 628.6 334 93.4
Cc03_g10680 Coffea canephora HOM05D000246 ORTHO05D005907 6.1e-178 627.5 332 93.1
Nitab4.5_0012487g0010 Nicotiana tabacum HOM05D000246 ORTHO05D005907 6.1e-178 627.5 335 93.7
Gorai.009G351400 Gossypium raimondii HOM05D000246 ORTHO05D005907 7.9e-178 627.1 339 92.0
Eucgr.H00462 Eucalyptus grandis HOM05D000246 ORTHO05D005907 1.0e-177 626.7 339 92.0
Gohir.D05G327500 Gossypium hirsutum HOM05D000246 ORTHO05D005907 1.0e-177 626.7 339 92.0
Aqoxy2G04069 Aquilegia oxysepala HOM05D000246 ORTHO05D005907 1.8e-177 625.9 340 92.6
Haze_11715 Corylus avellana HOM05D000246 ORTHO05D005907 2.3e-177 625.5 339 92.3
Cfa008706 Carpinus fangiana HOM05D000246 ORTHO05D005907 3.0e-177 625.2 339 92.3
ClCG07G015740 Citrullus lanatus HOM05D000246 ORTHO05D005907 3.0e-177 625.2 339 92.3
Migut.N00444 Erythranthe guttata HOM05D000246 ORTHO05D005907 3.0e-177 625.2 335 92.8
Potri.014G147100 Populus trichocarpa HOM05D000246 ORTHO05D005907 3.0e-177 625.2 342 91.2
Thecc.04G186400 Theobroma cacao HOM05D000246 ORTHO05D005907 3.0e-177 625.2 339 92.0
Glyma.02G097300 Glycine max HOM05D000246 ORTHO05D005907 5.1e-177 624.4 340 92.4
PGSC0003DMG400004583 Solanum tuberosum HOM05D000246 ORTHO05D005907 5.1e-177 624.4 334 93.4
Lsat_1_v5_gn_6_71461 Lactuca sativa HOM05D000246 ORTHO05D005907 8.7e-177 623.6 338 92.6
CsaV3_4G003350 Cucumis sativus L. HOM05D000246 ORTHO05D005907 1.1e-176 623.2 339 91.7
Nn1g09763 Nelumbo nucifera HOM05D000246 ORTHO05D005907 1.9e-176 622.5 332 92.8
Lalb_Chr10g0092081 Lupinus albus HOM05D000246 ORTHO05D005907 2.5e-176 622.1 337 92.0
Nitab4.5_0000978g0210 Nicotiana tabacum HOM05D000246 ORTHO05D005907 2.5e-176 622.1 334 91.6
Sopen12g033430 Solanum pennellii HOM05D000246 ORTHO05D005907 2.5e-176 622.1 334 92.8
Gorai.006G227100 Gossypium raimondii HOM05D000246 ORTHO05D005907 3.3e-176 621.7 339 90.9
Phvul.008G017300 Phaseolus vulgaris HOM05D000246 ORTHO05D005907 4.3e-176 621.3 339 92.0
MSTRG.21977 Avicennia marina HOM05D000246 ORTHO05D005907 5.7e-176 620.9 335 91.9
Cpa.g.sc53.167 Carica papaya HOM05D000246 ORTHO05D005907 5.7e-176 620.9 332 92.8
Glyma.18G284200 Glycine max HOM05D000246 ORTHO05D005907 5.7e-176 620.9 339 92.3
VMungo1383G1353 Vigna mungo HOM05D000246 ORTHO05D005907 5.7e-176 620.9 339 91.7
Gohir.D09G203200 Gossypium hirsutum HOM05D000246 ORTHO05D005907 7.4e-176 620.5 339 90.6
Ca_07120_v3 Cicer arietinum L. HOM05D000246 ORTHO05D005907 9.7e-176 620.2 339 90.9
Solyc09g098280.3 Solanum lycopersicum HOM05D000246 ORTHO05D005907 9.7e-176 620.2 340 92.1
PGSC0003DMG400021629 Solanum tuberosum HOM05D000246 ORTHO05D005907 9.7e-176 620.2 340 92.1
Gohir.A09G209800 Gossypium hirsutum HOM05D000246 ORTHO05D005907 1.3e-175 619.8 339 90.6
Lsat_1_v5_gn_6_32061 Lactuca sativa HOM05D000246 ORTHO05D005907 1.7e-175 619.4 331 93.4
PGR142G3194 Punica granatum HOM05D000246 ORTHO05D005907 1.7e-175 619.4 332 91.6
Sc19g0007630 Simmondsia chinensis HOM05D000246 ORTHO05D005907 1.7e-175 619.4 339 91.4
Lj1g0023209 Lotus japonicus HOM05D000246 ORTHO05D005907 2.2e-175 619.0 339 91.4
Sopen09g036210 Solanum pennellii HOM05D000246 ORTHO05D005907 2.2e-175 619.0 340 91.8
Nitab4.5_0006519g0040 Nicotiana tabacum HOM05D000246 ORTHO05D005907 2.8e-175 618.6 334 90.7
EL10Ac3g07395 Beta vulgaris HOM05D000246 ORTHO05D005907 3.7e-175 618.2 339 90.9
Psat3g188360 Pisum sativum HOM05D000246 ORTHO05D005907 8.2e-175 617.1 339 90.3
Sed0019749 Sechium edule HOM05D000246 ORTHO05D005907 8.2e-175 617.1 339 90.9
Sed0019335 Sechium edule HOM05D000246 ORTHO05D005907 2.4e-174 615.5 339 90.9
PSO675G5278 Papaver somniferum HOM05D000246 ORTHO05D005907 4.1e-174 614.8 339 90.3
Lalb_Chr25g0284231 Lupinus albus HOM05D000246 ORTHO05D005907 5.3e-174 614.4 339 90.6
Hund24461 Selenicereus undatus HOM05D000246 ORTHO05D005907 6.9e-174 614.0 340 90.6
FAN17G0846 Fragaria x ananassa HOM05D000246 ORTHO05D005907 9.1e-174 613.6 341 90.3
PSO017G6996 Papaver somniferum HOM05D000246 ORTHO05D005907 9.1e-174 613.6 339 90.0
CANSAT78G0915 Cannabis sativa HOM05D000246 ORTHO05D005907 1.2e-173 613.2 332 91.6
Medtr7g021870 Medicago truncatula HOM05D000246 ORTHO05D005907 2.0e-173 612.5 337 89.9
FvH4_4g12310 Fragaria vesca HOM05D000246 ORTHO05D005907 2.6e-173 612.1 341 90.0
FAN12G0598 Fragaria x ananassa HOM05D000246 ORTHO05D005907 2.6e-173 612.1 341 90.0
arahy.Tifrunner.gnm1.ann1.13067A Arachis hypogaea HOM05D000246 ORTHO05D005907 7.7e-173 610.5 339 90.3
arahy.Tifrunner.gnm1.ann1.N8MPD0 Arachis hypogaea HOM05D000246 ORTHO05D005907 7.7e-173 610.5 339 90.3
arahy.Tifrunner.gnm1.ann1.P7X33L Arachis hypogaea HOM05D000246 ORTHO05D005907 7.7e-173 610.5 339 90.3
HanXRQChr10g0290061 Helianthus annuus HOM05D000246 ORTHO05D005907 7.7e-173 610.5 340 90.6
Potri.002G233500 Populus trichocarpa HOM05D000246 ORTHO05D005907 1.7e-172 609.4 337 89.3
unitig_578.g16351 Utricularia gibba HOM05D000246 ORTHO05D005907 1.7e-172 609.4 339 89.7
AUR62020934 Chenopodium quinoa HOM05D000246 ORTHO05D005907 2.2e-172 609.0 333 91.0
FAN07G2572 Fragaria x ananassa HOM05D000246 ORTHO05D005907 2.9e-172 608.6 341 89.4
FAN22G2422 Fragaria x ananassa HOM05D000246 ORTHO05D005907 2.9e-172 608.6 342 89.2
Ciclev10005378m.g Citrus clementina HOM05D000246 ORTHO05D005907 1.9e-171 605.9 339 88.8
Rhsim09G0037600 Rhododendron simsii HOM05D000246 ORTHO05D005907 1.9e-171 605.9 352 87.8
DCAR_001263 Daucus carota HOM05D000246 ORTHO05D005907 4.7e-170 601.3 319 94.0
CDE05G2302 Ceratophyllum demersum HOM05D000246 ORTHO05D005907 7.9e-170 600.5 333 87.4
SalBow6G1195 Salvia bowleyana HOM05D000246 ORTHO05D005907 2.3e-169 599.0 377 81.7
HPP92_006214 Vanilla planifolia HOM05D000246 ORTHO05D005907 5.1e-169 597.8 335 88.1
CAN.G710.44 Capsicum annuum HOM05D000246 ORTHO05D005907 3.3e-168 595.1 309 95.1
Dinv44209 Davidia involucrata HOM05D000246 ORTHO05D005907 7.4e-168 594.0 339 90.6
QL06p027657 Quercus lobata HOM05D000246 ORTHO05D005907 2.8e-167 592.0 317 92.7
THA.LOC104819306 Tarenaya hassleriana HOM05D000246 ORTHO05D005907 4.8e-167 591.3 335 86.6
Sabra14G0110400 Salix brachista HOM05D000246 ORTHO05D005907 4.1e-166 588.2 339 86.7
SGA_v2.0_scaffold178G39529 Striga asiatica HOM05D000246 ORTHO05D005907 5.3e-166 587.8 309 93.5
Thhalv10008134m.g Eutrema salsugineum HOM05D000246 ORTHO05D005907 2.6e-165 585.5 336 85.7
Sp1g09540 Schrenkiella parvula HOM05D000246 ORTHO05D005907 3.4e-165 585.1 336 85.7
THA.LOC104809592 Tarenaya hassleriana HOM05D000246 ORTHO05D005907 3.4e-165 585.1 335 85.4
Aa31LG1G4010 Aethionema arabicum HOM05D000246 ORTHO05D005907 4.5e-165 584.7 336 85.4
CDE05G0298 Ceratophyllum demersum HOM05D000246 ORTHO05D005907 5.9e-165 584.3 333 85.6
Carub.0001s1038 Capsella rubella HOM05D000246 ORTHO05D005907 7.7e-165 583.9 340 85.3
BraA09t41822Z Brassica rapa HOM05D000246 ORTHO05D005907 1.7e-164 582.8 333 85.6
A08p33760 Brassica napus HOM05D000246 ORTHO05D005907 2.9e-164 582.0 336 84.5
Atru.chr3.1829 Acer truncatum HOM05D000246 ORTHO05D005907 3.8e-164 581.6 320 91.2
BolC8t52387H Brassica oleracea HOM05D000246 ORTHO05D005907 3.8e-164 581.6 333 85.3
BraA08t35292Z Brassica rapa HOM05D000246 ORTHO05D005907 3.8e-164 581.6 333 85.6
AT1G10840 Arabidopsis thaliana HOM05D000246 ORTHO05D005907 6.5e-164 580.9 336 85.1
A06p07620 Brassica napus HOM05D000246 ORTHO05D005907 8.5e-164 580.5 333 85.3
C08p48480 Brassica napus HOM05D000246 ORTHO05D005907 8.5e-164 580.5 333 85.0
BraA06t23964Z Brassica rapa HOM05D000246 ORTHO05D005907 8.5e-164 580.5 333 85.3
BcaC07g38630 Brassica carinata HOM05D000246 ORTHO05D005396 1.1e-163 580.1 333 85.0
AL1G21780 Arabidopsis lyrata HOM05D000246 ORTHO05D005907 1.4e-163 579.7 336 84.8
BcaC05g24965 Brassica carinata HOM05D000246 ORTHO05D005907 1.4e-163 579.7 336 84.5
FAN12G1501 Fragaria x ananassa HOM05D000246 ORTHO05D005907 2.5e-163 578.9 322 90.1
C05p09210 Brassica napus HOM05D000246 ORTHO05D005907 4.2e-163 578.2 336 84.2
BcaC07g38591 Brassica carinata HOM05D000246 ORTHO05D005907 5.5e-163 577.8 336 84.5
BolC8t49032H Brassica oleracea HOM05D000246 ORTHO05D005907 7.2e-163 577.4 333 85.0
Os04g0376500 Oryza sativa ssp. japonica HOM05D000246 ORTHO05D005907 7.2e-163 577.4 334 84.7
ATR1147G030 Amborella trichopoda HOM05D000246 ORTHO05D005907 3.6e-162 575.1 313 90.1
BcaNung06200 Brassica carinata HOM05D000246 ORTHO05D005907 3.6e-162 575.1 327 85.0
CARHR011060 Cardamine hirsuta HOM05D000246 ORTHO05D005907 6.1e-162 574.3 336 84.5
Nitab4.5_0001526g0070 Nicotiana tabacum HOM05D000246 ORTHO05D005907 6.1e-162 574.3 340 87.1
A09p64720 Brassica napus HOM05D000246 ORTHO05D005907 2.3e-161 572.4 351 81.2
Zm00001eb420800 Zea mays HOM05D000246 ORTHO05D005907 1.5e-160 569.7 334 83.8
SMO201G0006 Selaginella moellendorffii HOM05D000246 ORTHO05D005907 2.4e-158 562.4 343 79.6
Mapoly0149s0014 Marchantia polymorpha HOM05D000246 ORTHO05D005907 4.1e-158 561.6 341 78.9
Duzib268G0303 Durio zibethinus HOM05D000246 ORTHO05D005907 5.9e-157 557.8 339 84.4
vmacro00560 Vaccinium macrocarpon HOM05D000246 ORTHO05D005907 3.8e-156 555.1 417 72.7
Oeu034474.1 Olea europaea HOM05D000246 ORTHO05D005907 6.5e-156 554.3 378 77.5
SEGI_02915 Sequoiadendron giganteum HOM05D000246 ORTHO05D005907 2.1e-154 549.3 337 78.9
Pp3c6_17230 Physcomitrium patens HOM05D000246 ORTHO05D005907 1.4e-153 546.6 334 79.3
BolC5t29661H Brassica oleracea HOM05D000246 ORTHO05D005907 1.8e-153 546.2 314 85.0
Pp3c25_2440 Physcomitrium patens HOM05D000246 ORTHO05D005907 2.0e-152 542.7 334 78.7
CSS0028322 Camellia sinensis var. sinensis HOM05D000246 ORTHO05D005907 6.1e-146 521.2 271 95.6
C08p13990 Brassica napus HOM05D000246 ORTHO05D005907 1.8e-145 519.6 359 74.7
TPR.G2903 Trifolium pratense HOM05D000246 ORTHO05D005907 2.6e-144 515.8 295 86.8
Nn7g38282 Nelumbo nucifera HOM05D000246 ORTHO05D005907 2.2e-143 512.7 332 81.3
TAR365G1195 Trochodendron aralioides HOM05D000246 ORTHO05D005907 2.2e-143 512.7 262 97.7
Hma1.2p1_1025F.1_g249250 Hydrangea macrophylla HOM05D000246 ORTHO05D005907 4.1e-142 508.4 262 97.3
Hma1.2p1_3184F.1_g333715 Hydrangea macrophylla HOM05D000246 ORTHO05D005907 4.1e-142 508.4 262 97.3
CBR_g23450 Chara braunii HOM05D000246 ORTHO05D005907 4.0e-137 491.9 316 74.7
COL.COLO4_08082 Corchorus olitorius HOM05D000246 ORTHO05D005907 1.8e-134 483.0 339 75.5
Duzib151G0358 Durio zibethinus HOM05D000246 ORTHO05D005907 1.7e-132 476.5 339 74.6
ECA238G0367 Erigeron canadensis HOM05D000246 ORTHO05D005907 1.1e-123 447.2 238 92.0
Ciclev10033395m.g Citrus clementina HOM05D000246 ORTHO05D005907 1.6e-122 443.4 341 66.9
Zm00001eb420740 Zea mays HOM05D000246 ORTHO05D005907 5.2e-121 438.3 251 84.9
AUR62018486 Chenopodium quinoa HOM05D000246 ORTHO05D005907 7.8e-117 424.5 251 84.5
PRCOL_00002009 Prasinoderma coloniale HOM05D000246 ORTHO05D005907 2.5e-115 419.5 311 64.3
AagrBONN_evm.TU.Sc2ySwM_344.209 Anthoceros agrestis HOM05D000246 ORTHO05D005907 2.6e-112 409.5 248 79.4
MELO3C017707.2 Cucumis melo HOM05D000246 ORTHO05D005907 2.2e-111 406.4 216 92.1
Cre16.g676314 Chlamydomonas reinhardtii HOM05D000246 ORTHO05D005907 3.8e-103 379.0 317 57.1
MCO05G711 Micromonas commoda HOM05D000246 ORTHO05D005907 3.8e-103 379.0 330 59.1
SHI25257 Sapria himalayana HOM05D000246 ORTHO05D005907 5.9e-56 222.2 128 85.9
Pp3c25_2670 Physcomitrium patens HOM05D000246 ORTHO05D005907 5.2e-44 182.6 163 61.3
Actinidia32962 Actinidia chinensis HOM05D000246 ORTHO05D052905 2.0e-35 154.1 180 54.4
PSO675G6425 Papaver somniferum HOM05D000246 ORTHO05D005907 4.5e-32 142.9 79 87.3
Dinv10886 Davidia involucrata HOM05D000246 ORTHO05D005907 2.7e-29 133.7 80 81.2
Dinv10847 Davidia involucrata HOM05D000246 ORTHO05D005907 3.4e-27 126.7 73 84.9
AagrBONN_evm.TU.Sc2ySwM_362.466 Anthoceros agrestis HOM05D000246 ORTHO05D075151 7.5e-27 125.6 74 82.4
COL.COLO4_30406 Corchorus olitorius HOM05D000246 ORTHO05D005907 1.0e-20 105.1 110 57.3
FAN20G1849 Fragaria x ananassa HOM05D000246 ORTHO05D209582 2.7e-16 90.5 51 84.3
Medtr7g064210 Medicago truncatula HOM05D000076 ORTHO05D036729 2.1e-13 80.9 99 48.5
Medtr2g022940 Medicago truncatula HOM05D000871 ORTHO05D036729 6.8e-12 75.9 98 49.0
VMungo0331G1529 Vigna mungo HOM05D000246 ORTHO05D436255 1.2e-11 75.1 42 81.0
HanXRQChr07g0191211 Helianthus annuus HOM05D000246 ORTHO05D224049 2.2e-10 70.9 60 63.3
HanXRQChr10g0296701 Helianthus annuus HOM05D000246 ORTHO05D221073 2.2e-10 70.9 60 63.3
AagrBONN_evm.TU.Sc2ySwM_362.465 Anthoceros agrestis HOM05D000246 ORTHO05D076687 4.9e-10 69.7 100 42.0
MELO3C032112.2 Cucumis melo HOM05D000002 ORTHO05D000001 1.5e-06 58.2 125 36.0


User provided reference genes

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