Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3C181G6 Lonicera japonica HOM05D004400 ORTHO05D005479 3.0e-243 844.7 416 100.0
Lj3A187G31 Lonicera japonica HOM05D004400 ORTHO05D005479 8.6e-243 843.2 416 99.8
Hma1.2p1_0115F.1_g056060 Hydrangea macrophylla HOM05D004400 ORTHO05D005479 3.9e-219 764.6 416 90.1
Hma1.2p1_0922F.1_g236910 Hydrangea macrophylla HOM05D004400 ORTHO05D005479 5.1e-219 764.2 416 89.9
Dinv36191 Davidia involucrata HOM05D004400 ORTHO05D005479 1.5e-218 762.7 416 89.9
ECA233G2606 Erigeron canadensis HOM05D004400 ORTHO05D005479 3.3e-218 761.5 416 88.9
Rhsim13G0215900 Rhododendron simsii HOM05D004400 ORTHO05D005479 5.6e-218 760.8 416 88.9
COL.COLO4_07229 Corchorus olitorius HOM05D004400 ORTHO05D005479 2.8e-217 758.4 416 89.4
DCAR_029980 Daucus carota HOM05D004400 ORTHO05D005479 6.2e-217 757.3 416 89.9
HanXRQChr12g0381201 Helianthus annuus HOM05D004400 ORTHO05D005479 1.4e-216 756.1 416 88.7
CiPaw.14G115100 Carya illinoinensis HOM05D004400 ORTHO05D005479 1.8e-216 755.7 416 88.7
FAN11G2969 Fragaria x ananassa HOM05D004400 ORTHO05D005479 1.8e-216 755.7 416 88.2
FAN21G0985 Fragaria x ananassa HOM05D004400 ORTHO05D005479 1.8e-216 755.7 416 88.5
Nn2g14932 Nelumbo nucifera HOM05D004400 ORTHO05D005479 2.4e-216 755.4 416 88.5
PSO384G2058 Papaver somniferum HOM05D004400 ORTHO05D005479 2.4e-216 755.4 416 89.4
Aqoxy2G00323 Aquilegia oxysepala HOM05D004400 ORTHO05D005479 3.1e-216 755.0 416 87.7
FAN25G1578 Fragaria x ananassa HOM05D004400 ORTHO05D005479 3.1e-216 755.0 416 88.2
FvH4_3g28090 Fragaria vesca HOM05D004400 ORTHO05D005479 4.0e-216 754.6 416 88.0
Potri.009G047700 Populus trichocarpa HOM05D004400 ORTHO05D005479 6.9e-216 753.8 416 88.5
FAN16G1059 Fragaria x ananassa HOM05D004400 ORTHO05D005479 9.0e-216 753.4 416 88.2
RcHm_v2.0_Chr5g0050781 Rosa chinensis HOM05D004400 ORTHO05D005479 9.0e-216 753.4 416 88.0
DCAR_002094 Daucus carota HOM05D004400 ORTHO05D005479 1.2e-215 753.1 416 88.2
MBI13_g29527_MAGBIO Magnolia biondii HOM05D004400 ORTHO05D005479 1.5e-215 752.7 416 88.0
Manes.02G141600 Manihot esculenta HOM05D004400 ORTHO05D005479 2.6e-215 751.9 416 88.2
Potri.001G253300 Populus trichocarpa HOM05D004400 ORTHO05D005479 3.4e-215 751.5 416 88.0
MSTRG.17628 Avicennia marina HOM05D004400 ORTHO05D005479 4.5e-215 751.1 416 88.0
PSO339G5023 Papaver somniferum HOM05D004400 ORTHO05D005479 4.5e-215 751.1 416 88.9
Lsat_1_v5_gn_5_64980 Lactuca sativa HOM05D004400 ORTHO05D005479 5.8e-215 750.7 416 87.7
CSS0001177 Camellia sinensis var. sinensis HOM05D004400 ORTHO05D005479 7.6e-215 750.4 416 87.7
CSS0015379 Camellia sinensis var. sinensis HOM05D004400 ORTHO05D005479 7.6e-215 750.4 416 87.7
CiPaw.13G152600 Carya illinoinensis HOM05D004400 ORTHO05D005479 1.7e-214 749.2 416 87.7
Haze_23202 Corylus avellana HOM05D004400 ORTHO05D005479 1.7e-214 749.2 416 88.0
TWI75G1130 Tripterygium wilfordii HOM05D004400 ORTHO05D005479 1.7e-214 749.2 416 88.0
Manes.01G181700 Manihot esculenta HOM05D004400 ORTHO05D005479 2.2e-214 748.8 416 87.5
Gohir.A05G070800 Gossypium hirsutum HOM05D004400 ORTHO05D005479 2.9e-214 748.4 416 87.7
Gohir.A13G217500 Gossypium hirsutum HOM05D004400 ORTHO05D005479 3.8e-214 748.0 416 88.2
Gorai.009G074800 Gossypium raimondii HOM05D004400 ORTHO05D005479 3.8e-214 748.0 416 87.7
Atru.chr3.2806 Acer truncatum HOM05D004400 ORTHO05D005479 8.4e-214 746.9 416 87.3
Gohir.D13G221100 Gossypium hirsutum HOM05D004400 ORTHO05D005479 1.1e-213 746.5 416 88.0
Gorai.013G252200 Gossypium raimondii HOM05D004400 ORTHO05D005479 1.1e-213 746.5 416 88.0
Solyc12g099930.2 Solanum lycopersicum HOM05D004400 ORTHO05D005479 1.1e-213 746.5 416 87.5
Sopen12g034550 Solanum pennellii HOM05D004400 ORTHO05D005479 1.1e-213 746.5 416 87.5
unitig_8.g2992 Utricularia gibba HOM05D004400 ORTHO05D005479 1.9e-213 745.7 416 86.8
Gohir.D05G073700 Gossypium hirsutum HOM05D004400 ORTHO05D005479 2.4e-213 745.3 416 87.5
TAR623G1228 Trochodendron aralioides HOM05D004400 ORTHO05D005479 2.4e-213 745.3 416 87.3
CAN.G484.7 Capsicum annuum HOM05D004400 ORTHO05D005479 4.2e-213 744.6 416 87.5
PGSC0003DMG400004652 Solanum tuberosum HOM05D004400 ORTHO05D005479 4.2e-213 744.6 416 87.3
MD11G1194500 Malus domestica HOM05D004400 ORTHO05D005479 5.5e-213 744.2 416 87.0
Duzib170G1108 Durio zibethinus HOM05D004400 ORTHO05D005479 7.1e-213 743.8 416 87.3
QL01p017697 Quercus lobata HOM05D004400 ORTHO05D005479 7.1e-213 743.8 415 86.3
Cfa009835 Carpinus fangiana HOM05D004400 ORTHO05D005479 1.2e-212 743.0 416 87.3
Nitab4.5_0011805g0020 Nicotiana tabacum HOM05D004400 ORTHO05D005479 1.2e-212 743.0 416 87.5
Oeu025899.1 Olea europaea HOM05D004400 ORTHO05D005479 1.2e-212 743.0 416 86.8
Thecc.09G244100 Theobroma cacao HOM05D004400 ORTHO05D005479 2.7e-212 741.9 416 86.8
SalBow6G1637 Salvia bowleyana HOM05D004400 ORTHO05D005479 3.5e-212 741.5 416 87.3
Lalb_Chr14g0365141 Lupinus albus HOM05D004400 ORTHO05D005479 4.6e-212 741.1 416 88.2
Prupe.4G258800 Prunus persica HOM05D004400 ORTHO05D005479 4.6e-212 741.1 416 86.8
MD03G1168700 Malus domestica HOM05D004400 ORTHO05D005479 1.8e-211 739.2 416 86.5
Cpa.g.sc892.2 Carica papaya HOM05D004400 ORTHO05D005479 2.3e-211 738.8 416 86.8
Lalb_Chr17g0348031 Lupinus albus HOM05D004400 ORTHO05D005479 2.3e-211 738.8 416 87.5
Ciclev10015490m.g Citrus clementina HOM05D004400 ORTHO05D005479 3.0e-211 738.4 416 86.1
Cc01_g05790 Coffea canephora HOM05D004400 ORTHO05D005479 3.0e-211 738.4 416 86.5
THA.LOC104826484 Tarenaya hassleriana HOM05D004400 ORTHO05D005479 3.9e-211 738.0 416 86.3
MELO3C015151.2 Cucumis melo HOM05D004400 ORTHO05D005479 5.1e-211 737.6 416 87.3
MELO3C014568.2 Cucumis melo HOM05D004400 ORTHO05D005479 6.7e-211 737.3 417 85.9
Duzib150G0360 Durio zibethinus HOM05D004400 ORTHO05D005479 1.1e-210 736.5 416 86.5
Eucgr.B03720 Eucalyptus grandis HOM05D004400 ORTHO05D005479 1.5e-210 736.1 416 86.1
PGR102G2835 Punica granatum HOM05D004400 ORTHO05D005479 9.6e-210 733.4 416 85.8
CsaV3_1G043170 Cucumis sativus L. HOM05D004400 ORTHO05D005479 1.6e-209 732.6 416 86.8
Lj6g0016070 Lotus japonicus HOM05D004400 ORTHO05D005479 1.6e-209 732.6 416 86.3
Sed0009312 Sechium edule HOM05D004400 ORTHO05D005479 1.6e-209 732.6 416 85.3
TPR.G8487 Trifolium pratense HOM05D004400 ORTHO05D005479 4.8e-209 731.1 416 86.3
CsaV3_6G039090 Cucumis sativus L. HOM05D004400 ORTHO05D005479 8.1e-209 730.3 416 85.3
Glyma.08G302600 Glycine max HOM05D004400 ORTHO05D005479 1.4e-208 729.6 416 86.1
SGA_v2.0_scaffold3G01468 Striga asiatica HOM05D004400 ORTHO05D005479 1.8e-208 729.2 416 85.3
VMungo0540G1800 Vigna mungo HOM05D004400 ORTHO05D005479 2.4e-208 728.8 416 85.8
ClCG02G022970 Citrullus lanatus HOM05D004400 ORTHO05D005479 3.1e-208 728.4 425 84.2
Ca_13793_v3 Cicer arietinum L. HOM05D004400 ORTHO05D005479 5.3e-208 727.6 416 85.6
CSS0007609 Camellia sinensis var. sinensis HOM05D004400 ORTHO05D005479 9.0e-208 726.9 416 84.9
ATR0721G062 Amborella trichopoda HOM05D004400 ORTHO05D005479 1.2e-207 726.5 416 85.3
CANSAT64G2455 Cannabis sativa HOM05D004400 ORTHO05D005479 3.4e-207 724.9 416 85.8
HPP92_001014 Vanilla planifolia HOM05D004400 ORTHO05D005479 3.4e-207 724.9 416 85.8
vmacro04009 Vaccinium macrocarpon HOM05D004400 ORTHO05D005479 5.8e-207 724.2 441 81.4
AUR62000174 Chenopodium quinoa HOM05D004400 ORTHO05D004881 1.0e-206 723.4 416 84.1
Glyma.18G116900 Glycine max HOM05D004400 ORTHO05D005479 1.7e-206 722.6 416 85.1
Nitab4.5_0001925g0250 Nicotiana tabacum HOM05D004400 ORTHO05D005479 1.7e-206 722.6 452 80.3
AUR62039836 Chenopodium quinoa HOM05D004400 ORTHO05D005479 1.9e-205 719.2 416 83.4
Phvul.006G029100 Phaseolus vulgaris HOM05D004400 ORTHO05D005479 2.5e-205 718.8 416 84.6
BcaC04g23083 Brassica carinata HOM05D004400 ORTHO05D005479 5.5e-205 717.6 416 84.1
A09p10380 Brassica napus HOM05D004400 ORTHO05D005479 5.5e-205 717.6 416 84.1
BraA09t36682Z Brassica rapa HOM05D004400 ORTHO05D005479 5.5e-205 717.6 416 84.1
C09p12320 Brassica napus HOM05D004400 ORTHO05D005479 7.1e-205 717.2 416 84.1
BolC9t54125H Brassica oleracea HOM05D004400 ORTHO05D005479 7.1e-205 717.2 416 84.1
Thhalv10022711m.g Eutrema salsugineum HOM05D004400 ORTHO05D005479 7.1e-205 717.2 416 84.4
Aa31sc61G60 Aethionema arabicum HOM05D004400 ORTHO05D005479 9.3e-205 716.8 416 84.4
Psat4g095360 Pisum sativum HOM05D004400 ORTHO05D005479 9.3e-205 716.8 416 84.6
Sp3g26830 Schrenkiella parvula HOM05D004400 ORTHO05D005479 9.3e-205 716.8 416 84.1
Sed0026623 Sechium edule HOM05D004400 ORTHO05D005479 9.3e-205 716.8 443 81.5
LjContig00049g0014500 Lotus japonicus HOM05D004400 ORTHO05D005479 1.6e-204 716.1 416 84.4
CARHR105160 Cardamine hirsuta HOM05D004400 ORTHO05D005479 2.1e-204 715.7 416 83.7
AL3G45260 Arabidopsis lyrata HOM05D004400 ORTHO05D005479 2.7e-204 715.3 416 83.7
AT2G13360 Arabidopsis thaliana HOM05D004400 ORTHO05D005479 2.7e-204 715.3 416 83.4
A03p44920 Brassica napus HOM05D004400 ORTHO05D005479 1.0e-203 713.4 416 83.7
BraA03t13629Z Brassica rapa HOM05D004400 ORTHO05D005479 1.0e-203 713.4 416 83.7
Hund21989 Selenicereus undatus HOM05D004400 ORTHO05D005479 1.3e-203 713.0 416 82.2
Carub.0003s2789 Capsella rubella HOM05D004400 ORTHO05D005479 2.3e-203 712.2 416 82.9
BcaC01g03126 Brassica carinata HOM05D004400 ORTHO05D005479 3.0e-203 711.8 416 83.4
C03p55800 Brassica napus HOM05D004400 ORTHO05D005479 3.0e-203 711.8 416 83.4
BolC3t17861H Brassica oleracea HOM05D004400 ORTHO05D005479 3.0e-203 711.8 416 83.4
BcaB08g34528 Brassica carinata HOM05D004400 ORTHO05D005479 5.1e-203 711.1 416 83.2
arahy.Tifrunner.gnm1.ann1.NTNX6Y Arachis hypogaea HOM05D004400 ORTHO05D005479 1.6e-201 706.1 416 84.6
Os08g0502700 Oryza sativa ssp. japonica HOM05D004400 ORTHO05D005479 1.6e-201 706.1 415 82.7
arahy.Tifrunner.gnm1.ann1.U6ZXMA Arachis hypogaea HOM05D004400 ORTHO05D005479 1.2e-199 699.9 433 82.0
Hund07449 Selenicereus undatus HOM05D004400 ORTHO05D005479 1.3e-198 696.4 416 81.7
Sabra09G0035000 Salix brachista HOM05D004400 ORTHO05D004881 1.7e-198 696.0 416 82.9
EL10Ac4g10172 Beta vulgaris HOM05D004400 ORTHO05D005479 2.2e-198 695.7 416 81.7
Actinidia16361 Actinidia chinensis HOM05D004400 ORTHO05D005479 3.8e-198 694.9 414 81.2
SEGI_24220 Sequoiadendron giganteum HOM05D004400 ORTHO05D005479 2.1e-196 689.1 416 79.6
Sabra16G0154200 Salix brachista HOM05D004400 ORTHO05D004881 3.0e-195 685.3 416 81.5
Zm00001eb034260 Zea mays HOM05D004400 ORTHO05D005479 3.0e-195 685.3 416 80.3
Migut.N02365 Erythranthe guttata HOM05D004400 ORTHO05D005479 2.6e-191 672.2 375 88.0
GSVIVG01037237001 Vitis vinifera HOM05D004400 ORTHO05D005479 1.3e-190 669.8 389 82.8
Medtr5g090070 Medicago truncatula HOM05D004400 ORTHO05D005479 5.5e-189 664.5 416 78.6
Ca_06224_v3 Cicer arietinum L. HOM05D004400 ORTHO05D005479 4.3e-186 654.8 416 76.2
Psat2g019120 Pisum sativum HOM05D004400 ORTHO05D005479 5.7e-186 654.4 416 76.7
Medtr3g053890 Medicago truncatula HOM05D004400 ORTHO05D005479 1.1e-184 650.2 374 84.8
Sc09g0000960 Simmondsia chinensis HOM05D004400 ORTHO05D005479 6.9e-184 647.5 371 84.4
TPR.G19354 Trifolium pratense HOM05D004400 ORTHO05D005479 5.9e-183 644.4 416 75.0
CDE08G1189 Ceratophyllum demersum HOM05D005522 ORTHO05D007414 1.3e-177 626.7 416 75.7
Oeu061291.1 Olea europaea HOM05D004400 ORTHO05D005479 2.0e-175 619.4 354 86.2
AagrBONN_evm.TU.Sc2ySwM_344.3612 Anthoceros agrestis HOM05D004400 ORTHO05D005479 4.5e-175 618.2 416 71.2
TAR369G0837 Trochodendron aralioides HOM05D004400 ORTHO05D005479 6.5e-174 614.4 348 86.2
Mapoly0001s0436 Marchantia polymorpha HOM05D004400 ORTHO05D005479 1.9e-173 612.8 411 70.8
SMO228G0177 Selaginella moellendorffii HOM05D004400 ORTHO05D005479 2.3e-171 605.9 416 70.2
CBR_g39952 Chara braunii HOM05D004400 ORTHO05D005479 6.7e-171 604.4 416 70.0
Peaxi162Scf00062g00919 Petunia axillaris HOM05D004400 ORTHO05D005479 2.0e-170 602.8 416 74.0
Pp3c18_8240 Physcomitrium patens HOM05D004400 ORTHO05D005479 1.7e-169 599.7 417 69.1
Pp3c21_12100 Physcomitrium patens HOM05D004400 ORTHO05D005479 2.2e-169 599.4 417 69.5
SMO117G0208 Selaginella moellendorffii HOM05D004400 ORTHO05D005479 1.3e-161 573.5 416 67.3
Mapoly0066s0091 Marchantia polymorpha HOM05D004400 ORTHO05D005479 2.4e-160 569.3 413 65.4
Pp3c1_24350 Physcomitrium patens HOM05D004400 ORTHO05D005479 1.9e-157 559.7 417 65.0
Dinv08771 Davidia involucrata HOM05D004400 ORTHO05D005479 1.8e-152 543.1 287 90.2
Sed0008818 Sechium edule HOM05D004400 ORTHO05D005479 7.3e-141 504.6 419 63.2
Medtr5g094410 Medicago truncatula HOM05D004400 ORTHO05D005479 2.8e-140 502.7 417 65.2
Medtr5g067370 Medicago truncatula HOM05D004400 ORTHO05D005479 8.6e-134 481.1 416 62.3
Zm00001eb034570 Zea mays HOM05D004400 ORTHO05D005479 3.0e-126 456.1 273 81.0
PRCOL_00005046 Prasinoderma coloniale HOM05D004400 ORTHO05D005479 7.8e-119 431.4 412 51.5
Cre01.g005150 Chlamydomonas reinhardtii HOM05D004400 ORTHO05D005479 4.4e-114 415.6 413 51.6
Psat5g194960 Pisum sativum HOM05D004400 ORTHO05D005479 7.8e-111 404.8 309 68.9
Zm00001eb034320 Zea mays HOM05D004400 ORTHO05D005479 6.4e-105 385.2 229 82.1
RcHm_v2.0_Chr2g0084601 Rosa chinensis HOM05D004400 ORTHO05D005479 5.4e-104 382.1 219 84.5
RcHm_v2.0_Chr5g0076081 Rosa chinensis HOM05D004400 ORTHO05D005479 2.1e-103 380.2 219 83.6
RcHm_v2.0_Chr2g0095031 Rosa chinensis HOM05D004400 ORTHO05D005479 4.6e-103 379.0 219 82.6
Pp3c10_5790 Physcomitrium patens HOM05D004400 ORTHO05D005479 2.1e-79 300.4 314 51.0
Actinidia06950 Actinidia chinensis HOM05D004400 ORTHO05D005479 6.7e-78 295.4 173 83.2
ClCG03G012880 Citrullus lanatus HOM05D004400 ORTHO05D005479 1.5e-77 294.3 163 89.0
Psat4g095320 Pisum sativum HOM05D004400 ORTHO05D005479 5.2e-54 216.1 117 87.2
Ca_13794_v3 Cicer arietinum L. HOM05D004400 ORTHO05D004881 8.6e-33 145.6 87 79.3
Cfa022418 Carpinus fangiana HOM05D004400 ORTHO05D005479 3.4e-29 133.7 364 28.3
Cre06.g294650 Chlamydomonas reinhardtii HOM05D004400 ORTHO05D005479 6.4e-28 129.4 365 27.9
Actinidia06949 Actinidia chinensis HOM05D004400 ORTHO05D005479 3.0e-17 94.0 47 91.5
Peaxi162Scf00234g00513 Petunia axillaris HOM05D004400 ORTHO05D306043 5.8e-13 79.7 77 54.5
Ah.08g223290 Amaranthus hybridus HOM05D004400 ORTHO05D005479 4.9e-12 76.6 45 73.3
CBR_g51244 Chara braunii HOM05D000019 ORTHO05D000353 2.5e-08 64.3 330 23.3


User provided reference genes

Program Settings