Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3C13G2 Lonicera japonica HOM05D000113 ORTHO05D030878 3.0e-75 285.0 140 100.0
Lj2C1199T13 Lonicera japonica HOM05D000113 ORTHO05D006161 9.6e-37 157.1 88 86.4
Lj5A370T56 Lonicera japonica HOM05D000113 ORTHO05D006161 1.8e-35 152.9 88 83.0
Actinidia25823 Actinidia chinensis HOM05D000113 ORTHO05D006161 6.7e-30 134.4 93 68.8
CSS0016737 Camellia sinensis var. sinensis HOM05D000113 ORTHO05D006161 1.3e-28 130.2 88 71.6
GSVIVG01028054001 Vitis vinifera HOM05D000113 ORTHO05D006161 8.1e-28 127.5 86 70.9
CiPaw.07G112500 Carya illinoinensis HOM05D000113 ORTHO05D006161 1.1e-27 127.1 110 60.0
Hma1.2p1_0098F.1_g048470 Hydrangea macrophylla HOM05D000113 ORTHO05D006161 1.1e-27 127.1 90 71.1
Hma1.2p1_0212F.1_g090260 Hydrangea macrophylla HOM05D000113 ORTHO05D006161 1.8e-27 126.3 88 68.2
vmacro04631 Vaccinium macrocarpon HOM05D000113 ORTHO05D006161 3.1e-27 125.6 88 68.2
Dinv42093 Davidia involucrata HOM05D000113 ORTHO05D006161 6.9e-27 124.4 95 65.3
Peaxi162Scf00150g00139 Petunia axillaris HOM05D000113 ORTHO05D006161 1.5e-26 123.2 88 68.2
Prupe.1G193500 Prunus persica HOM05D000113 ORTHO05D006161 2.0e-26 122.9 108 56.5
TAR633G2709 Trochodendron aralioides HOM05D000113 ORTHO05D006161 2.0e-26 122.9 93 65.6
Rhsim01G0287700 Rhododendron simsii HOM05D000113 ORTHO05D006161 2.6e-26 122.5 88 68.2
Oeu008340.1 Olea europaea HOM05D000113 ORTHO05D006161 5.8e-26 121.3 86 69.8
Hund05453 Selenicereus undatus HOM05D000113 ORTHO05D006161 7.6e-26 120.9 108 58.3
Cpa.g.sc151.33 Carica papaya HOM05D000113 ORTHO05D006161 1.3e-25 120.2 88 67.0
QL12p027746 Quercus lobata HOM05D000113 ORTHO05D006161 2.2e-25 119.4 88 68.2
Sc15g0001890 Simmondsia chinensis HOM05D000113 ORTHO05D006161 2.2e-25 119.4 85 67.1
TWI59G0818 Tripterygium wilfordii HOM05D000113 ORTHO05D006161 2.2e-25 119.4 109 55.0
DCAR_012372 Daucus carota HOM05D000113 ORTHO05D006161 6.4e-25 117.9 93 59.1
TAR362G0332 Trochodendron aralioides HOM05D000113 ORTHO05D006161 8.4e-25 117.5 109 56.0
Cc08_g12990 Coffea canephora HOM05D000113 ORTHO05D006161 1.9e-24 116.3 88 64.8
Sc26g0003690 Simmondsia chinensis HOM05D000113 ORTHO05D006161 2.4e-24 115.9 86 64.0
MSTRG.21654 Avicennia marina HOM05D000113 ORTHO05D006161 3.2e-24 115.5 92 62.0
RcHm_v2.0_Chr4g0407811 Rosa chinensis HOM05D000113 ORTHO05D006161 3.2e-24 115.5 110 55.5
EL10Ac6g14998 Beta vulgaris HOM05D000113 ORTHO05D006161 4.2e-24 115.2 86 62.8
Nn5g26851 Nelumbo nucifera HOM05D000113 ORTHO05D006161 5.5e-24 114.8 93 60.2
Haze_04980 Corylus avellana HOM05D001493 ORTHO05D006161 1.2e-23 113.6 86 66.3
PGSC0003DMG401000100 Solanum tuberosum HOM05D000113 ORTHO05D006161 1.2e-23 113.6 86 61.6
Cfa005867 Carpinus fangiana HOM05D000113 ORTHO05D006161 2.7e-23 112.5 86 65.1
Sopen01g039450 Solanum pennellii HOM05D000113 ORTHO05D006161 3.5e-23 112.1 86 61.6
Solyc01g095710.3 Solanum lycopersicum HOM05D000113 ORTHO05D006161 6.0e-23 111.3 86 61.6
FvH4_3g40090 Fragaria vesca HOM05D000113 ORTHO05D006161 1.3e-22 110.2 92 58.7
FAN11G2310 Fragaria x ananassa HOM05D000113 ORTHO05D006161 1.3e-22 110.2 92 58.7
FAN16G3510 Fragaria x ananassa HOM05D000113 ORTHO05D006161 1.3e-22 110.2 92 58.7
FAN21G3024 Fragaria x ananassa HOM05D000113 ORTHO05D006161 1.8e-22 109.8 92 58.7
PGR044G2751 Punica granatum HOM05D000113 ORTHO05D006161 1.8e-22 109.8 84 61.9
Sed0026170 Sechium edule HOM05D000113 ORTHO05D006161 1.8e-22 109.8 90 61.1
Migut.D00126 Erythranthe guttata HOM05D000113 ORTHO05D006161 6.7e-22 107.8 86 60.5
Glyma.03G024000 Glycine max HOM05D000113 ORTHO05D006161 6.7e-22 107.8 87 62.1
Lj2g0016628 Lotus japonicus HOM05D000113 ORTHO05D006161 6.7e-22 107.8 92 59.8
MBI04_g31155_MAGBIO Magnolia biondii HOM05D000113 ORTHO05D006161 6.7e-22 107.8 86 62.8
PSO675G6280 Papaver somniferum HOM05D000113 ORTHO05D006161 6.7e-22 107.8 84 61.9
Atru.chr5.1086 Acer truncatum HOM05D000113 ORTHO05D006161 1.1e-21 107.1 117 50.4
Lj4g0011992 Lotus japonicus HOM05D000113 ORTHO05D006161 1.1e-21 107.1 92 58.7
Eucgr.E04059 Eucalyptus grandis HOM05D000113 ORTHO05D006161 1.9e-21 106.3 87 58.6
SalBow6G1114 Salvia bowleyana HOM05D000113 ORTHO05D006161 1.9e-21 106.3 84 59.5
Thecc.01G306300 Theobroma cacao HOM05D000113 ORTHO05D006161 1.9e-21 106.3 109 51.4
Thecc.10G083300 Theobroma cacao HOM05D000113 ORTHO05D006161 1.9e-21 106.3 109 50.5
arahy.Tifrunner.gnm1.ann1.SIBB7F Arachis hypogaea HOM05D000113 ORTHO05D006161 2.5e-21 105.9 92 57.6
Glyma.01G142700 Glycine max HOM05D000113 ORTHO05D006161 3.3e-21 105.5 87 60.9
ATR0307G121 Amborella trichopoda HOM05D000113 ORTHO05D006161 7.4e-21 104.4 86 59.3
Ca_15122_v3 Cicer arietinum L. HOM05D000113 ORTHO05D006161 7.4e-21 104.4 87 60.9
Ciclev10018519m.g Citrus clementina HOM05D000113 ORTHO05D006161 7.4e-21 104.4 87 59.8
Manes.01G223000 Manihot esculenta HOM05D000113 ORTHO05D006161 7.4e-21 104.4 91 54.9
Psat7g233480 Pisum sativum HOM05D000113 ORTHO05D006161 7.4e-21 104.4 86 61.6
SGA_v2.0_scaffold334G49027 Striga asiatica HOM05D000113 ORTHO05D006161 9.6e-21 104.0 88 60.2
Aqoxy2G02870 Aquilegia oxysepala HOM05D000113 ORTHO05D006161 1.3e-20 103.6 86 60.5
arahy.Tifrunner.gnm1.ann1.M111ST Arachis hypogaea HOM05D000113 ORTHO05D006161 1.3e-20 103.6 89 59.6
Duzib138G1872 Durio zibethinus HOM05D000113 ORTHO05D006161 1.6e-20 103.2 109 49.5
CANSAT80G0530 Cannabis sativa HOM05D000113 ORTHO05D006161 2.1e-20 102.8 89 56.2
MD04G1241500 Malus domestica HOM05D000113 ORTHO05D006161 2.1e-20 102.8 87 57.5
VMungo0331G1928 Vigna mungo HOM05D001793 ORTHO05D006161 2.1e-20 102.8 87 59.8
MELO3C015960.2 Cucumis melo HOM05D000113 ORTHO05D006161 3.7e-20 102.1 90 57.8
Gorai.001G141100 Gossypium raimondii HOM05D000113 ORTHO05D006161 4.8e-20 101.7 109 48.6
Medtr4g120070 Medicago truncatula HOM05D000113 ORTHO05D006161 4.8e-20 101.7 87 58.6
Phvul.010G084200 Phaseolus vulgaris HOM05D000113 ORTHO05D006161 4.8e-20 101.7 87 58.6
Lalb_Chr10g0099391 Lupinus albus HOM05D000113 ORTHO05D006161 8.1e-20 100.9 86 58.1
TPR.G9858 Trifolium pratense HOM05D000113 ORTHO05D006161 8.1e-20 100.9 86 58.1
ClCG09G005490 Citrullus lanatus HOM05D000113 ORTHO05D006161 1.1e-19 100.5 90 56.7
Medtr4g023590 Medicago truncatula HOM05D000113 ORTHO05D006161 1.4e-19 100.1 87 56.3
CAN.G986.23 Capsicum annuum HOM05D000113 ORTHO05D006161 2.4e-19 99.4 87 56.3
Gohir.D07G130400 Gossypium hirsutum HOM05D000113 ORTHO05D006161 2.4e-19 99.4 109 47.7
CsaV3_7G029610 Cucumis sativus L. HOM05D000113 ORTHO05D006161 4.0e-19 98.6 90 56.7
CSS0034422 Camellia sinensis var. sinensis HOM05D000113 ORTHO05D006161 6.9e-19 97.8 88 58.0
PSO339G3312 Papaver somniferum HOM05D000113 ORTHO05D006161 1.2e-18 97.1 85 57.6
AUR62025517 Chenopodium quinoa HOM05D000113 ORTHO05D006161 1.3e-17 93.6 91 51.6
Gohir.A07G126300 Gossypium hirsutum HOM05D000113 ORTHO05D006161 2.2e-17 92.8 109 45.9
AUR62008717 Chenopodium quinoa HOM05D000113 ORTHO05D006161 6.5e-17 91.3 136 39.0
HanXRQChr04g0105431 Helianthus annuus HOM05D000113 ORTHO05D006161 1.1e-16 90.5 88 48.9
Prupe.1G445700 Prunus persica HOM05D000113 ORTHO05D006161 1.2e-15 87.0 87 48.3
ECA248G0290 Erigeron canadensis HOM05D000113 ORTHO05D006161 1.6e-15 86.7 86 50.0
Lsat_1_v5_gn_3_139220 Lactuca sativa HOM05D000113 ORTHO05D006161 1.6e-15 86.7 86 47.7
SHI19097 Sapria himalayana HOM05D000113 ORTHO05D006161 2.1e-15 86.3 87 48.3
unitig_22.g5234 Utricularia gibba HOM05D000113 ORTHO05D006161 1.0e-14 84.0 88 46.6
Rhsim09G0109600 Rhododendron simsii HOM05D000113 ORTHO05D006161 1.8e-14 83.2 66 65.2
EL10Ac4g10264 Beta vulgaris HOM05D000113 ORTHO05D006161 8.7e-14 80.9 84 48.8
EL10Ac4g10280 Beta vulgaris HOM05D000113 ORTHO05D006161 8.7e-14 80.9 84 48.8
Actinidia24814 Actinidia chinensis HOM05D000113 ORTHO05D030878 1.3e-12 77.0 83 47.0
CAN.G535.3 Capsicum annuum HOM05D000113 ORTHO05D030878 3.7e-12 75.5 78 50.0
EL10Ac4g07792 Beta vulgaris HOM05D000113 ORTHO05D006161 4.8e-12 75.1 84 46.4
CDE07G1855 Ceratophyllum demersum HOM05D000113 ORTHO05D006161 8.2e-12 74.3 78 48.7
Os02g0736600 Oryza sativa ssp. japonica HOM05D000113 ORTHO05D006161 1.8e-11 73.2 90 42.2
BraA02t08535Z Brassica rapa HOM05D000113 ORTHO05D006161 4.1e-11 72.0 86 43.0
Aa31LG1G28830 Aethionema arabicum HOM05D000113 ORTHO05D006161 9.0e-11 70.9 87 42.5
BcaC03g17457 Brassica carinata HOM05D000113 ORTHO05D006161 1.2e-10 70.5 86 41.9
Carub.0001s3158 Capsella rubella HOM05D000113 ORTHO05D006161 1.5e-10 70.1 92 41.3
CARHR032810 Cardamine hirsuta HOM05D000113 ORTHO05D006161 1.5e-10 70.1 92 41.3
RcHm_v2.0_Chr7g0220171 Rosa chinensis HOM05D000113 ORTHO05D006161 2.0e-10 69.7 85 43.5
THA.LOC104802184 Tarenaya hassleriana HOM05D000113 ORTHO05D006161 2.0e-10 69.7 88 39.8
AL8G14950 Arabidopsis lyrata HOM05D000113 ORTHO05D006161 2.6e-10 69.3 92 40.2
A02p35320 Brassica napus HOM05D000113 ORTHO05D006161 3.4e-10 68.9 86 41.9
C02p54060 Brassica napus HOM05D000113 ORTHO05D006161 4.5e-10 68.6 86 40.7
BolC2t11468H Brassica oleracea HOM05D000113 ORTHO05D006161 4.5e-10 68.6 86 40.7
AL1G47770 Arabidopsis lyrata HOM05D000113 ORTHO05D006161 1.0e-09 67.4 92 40.2
Thhalv10024243m.g Eutrema salsugineum HOM05D000113 ORTHO05D006161 1.7e-09 66.6 85 41.2
Sp7g11220 Schrenkiella parvula HOM05D000113 ORTHO05D006161 2.9e-09 65.9 92 39.1
Nitab4.5_0004367g0140 Nicotiana tabacum HOM05D000113 ORTHO05D006161 5.0e-09 65.1 37 67.6
Zm00001eb253900 Zea mays HOM05D000113 ORTHO05D006161 6.5e-09 64.7 87 37.9
RcHm_v2.0_Chr4g0386401 Rosa chinensis HOM05D000113 ORTHO05D006161 1.1e-08 63.9 79 44.3
Migut.G00075 Erythranthe guttata HOM05D000113 ORTHO05D006161 1.4e-08 63.5 66 50.0
SEGI_29750 Sequoiadendron giganteum HOM05D000113 ORTHO05D006161 1.9e-08 63.2 88 37.5
SEGI_22008 Sequoiadendron giganteum HOM05D000113 ORTHO05D006161 2.5e-08 62.8 87 37.9
BcaB07g30168 Brassica carinata HOM05D000113 ORTHO05D006161 2.7e-07 59.3 84 38.1
BcaC03g17455 Brassica carinata HOM05D000113 ORTHO05D006161 2.7e-07 59.3 84 38.1
Mapoly0044s0018 Marchantia polymorpha HOM05D000113 ORTHO05D006161 2.7e-07 59.3 92 34.8
SMO367G1023 Selaginella moellendorffii HOM05D000113 ORTHO05D006161 5.1e-06 55.1 94 38.3


User provided reference genes

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