Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3C139T4 Lonicera japonica HOM05D001388 ORTHO05D001234 2.1e-33 145.2 78 100.0
Lj3A140G7 Lonicera japonica HOM05D001388 ORTHO05D001234 2.7e-28 128.3 71 98.6
Lj3A115T17 Lonicera japonica HOM05D001388 ORTHO05D001234 1.0e-27 126.3 71 97.2
Lj3A137T7 Lonicera japonica HOM05D001388 ORTHO05D001234 1.0e-27 126.3 71 97.2
Lj3A138G7 Lonicera japonica HOM05D001388 ORTHO05D001234 6.1e-25 117.1 67 94.0
Lj3C141G1 Lonicera japonica HOM05D001388 ORTHO05D001234 1.8e-21 105.5 71 84.5
Lj3C138T1 Lonicera japonica HOM05D001388 ORTHO05D001234 7.0e-21 103.6 72 81.9
Lj3A136G5 Lonicera japonica HOM05D001388 ORTHO05D001234 1.2e-20 102.8 73 80.8
Lj3C115G1 Lonicera japonica HOM05D001388 ORTHO05D001234 1.2e-20 102.8 73 82.2
Lj7A626T77 Lonicera japonica HOM05D001388 ORTHO05D001234 2.5e-18 95.1 71 77.5
Duzib211G0308 Durio zibethinus HOM05D001388 ORTHO05D001234 3.7e-14 81.3 71 70.4
Gohir.D13G120900 Gossypium hirsutum HOM05D001388 ORTHO05D001234 3.7e-14 81.3 71 70.4
Gorai.013G135100 Gossypium raimondii HOM05D001388 ORTHO05D001234 3.7e-14 81.3 71 70.4
Rhsim12G0003100 Rhododendron simsii HOM05D001388 ORTHO05D001234 3.7e-14 81.3 71 69.0
Sc07g0009470 Simmondsia chinensis HOM05D001388 ORTHO05D001234 3.7e-14 81.3 71 69.0
vmacro00938 Vaccinium macrocarpon HOM05D001388 ORTHO05D001234 3.7e-14 81.3 71 67.6
HanXRQChr05g0134581 Helianthus annuus HOM05D001388 ORTHO05D001234 4.9e-14 80.9 71 67.6
HanXRQChr05g0134591 Helianthus annuus HOM05D001388 ORTHO05D001234 4.9e-14 80.9 71 67.6
Dinv41791 Davidia involucrata HOM05D001388 ORTHO05D001234 8.3e-14 80.1 71 67.6
Gohir.A13G117700 Gossypium hirsutum HOM05D001388 ORTHO05D001234 8.3e-14 80.1 71 69.0
Hma1.2p1_0004F.1_g003870 Hydrangea macrophylla HOM05D001388 ORTHO05D001234 1.1e-13 79.7 71 69.0
MSTRG.25480 Avicennia marina HOM05D001388 ORTHO05D001234 1.4e-13 79.3 71 69.0
CSS0026347 Camellia sinensis var. sinensis HOM05D001388 ORTHO05D001234 1.4e-13 79.3 71 67.6
Hma1.2p1_0647F.1_g195040 Hydrangea macrophylla HOM05D001388 ORTHO05D001234 1.4e-13 79.3 71 67.6
ECA246G0461 Erigeron canadensis HOM05D001388 ORTHO05D001234 1.8e-13 79.0 71 66.2
Actinidia07845 Actinidia chinensis HOM05D001388 ORTHO05D001234 3.2e-13 78.2 71 67.6
MELO3C005230.2 Cucumis melo HOM05D001388 ORTHO05D001234 4.1e-13 77.8 71 70.4
CsaV3_5G017230 Cucumis sativus L. HOM05D001388 ORTHO05D001234 4.1e-13 77.8 71 70.4
GSVIVG01025947001 Vitis vinifera HOM05D001388 ORTHO05D001234 4.1e-13 77.8 71 66.2
Ah.05g168640 Amaranthus hybridus HOM05D001388 ORTHO05D001234 5.4e-13 77.4 71 66.2
Manes.05G114300 Manihot esculenta HOM05D001388 ORTHO05D001234 1.2e-12 76.3 71 67.6
AUR62022365 Chenopodium quinoa HOM05D001388 ORTHO05D001234 1.6e-12 75.9 71 62.0
SGA_v2.0_scaffold19G08932 Striga asiatica HOM05D001388 ORTHO05D001234 2.0e-12 75.5 71 64.8
Eucgr.F02982 Eucalyptus grandis HOM05D001388 ORTHO05D001234 2.7e-12 75.1 71 67.6
Actinidia01548 Actinidia chinensis HOM05D001388 ORTHO05D001234 3.5e-12 74.7 72 63.9
Atru.chr13.2296 Acer truncatum HOM05D001388 ORTHO05D001234 5.9e-12 73.9 71 66.2
CAN.G194.18 Capsicum annuum HOM05D001388 ORTHO05D001234 7.8e-12 73.6 71 62.0
Peaxi162Scf00688g00350 Petunia axillaris HOM05D001388 ORTHO05D001234 7.8e-12 73.6 71 62.0
AUR62034336 Chenopodium quinoa HOM05D001388 ORTHO05D001234 1.0e-11 73.2 71 59.2
TAR381G0841 Trochodendron aralioides HOM05D001388 ORTHO05D001234 1.0e-11 73.2 71 64.8
COL.COLO4_24637 Corchorus olitorius HOM05D001388 ORTHO05D001234 1.3e-11 72.8 71 63.4
Migut.C01332 Erythranthe guttata HOM05D001388 ORTHO05D001234 2.3e-11 72.0 71 60.6
EL10Ac1g01662 Beta vulgaris HOM05D001388 ORTHO05D001234 2.9e-11 71.6 71 62.0
Ciclev10024527m.g Citrus clementina HOM05D001388 ORTHO05D001234 2.9e-11 71.6 54 75.9
Cc10_g09430 Coffea canephora HOM05D001388 ORTHO05D001234 2.9e-11 71.6 75 57.3
PGSC0003DMG400025528 Solanum tuberosum HOM05D001388 ORTHO05D001234 2.9e-11 71.6 71 62.0
Nitab4.5_0000016g0470 Nicotiana tabacum HOM05D001388 ORTHO05D001234 5.0e-11 70.9 72 61.1
MBI06_g06698_MAGBIO Magnolia biondii HOM05D001388 ORTHO05D001234 8.6e-11 70.1 71 57.7
Actinidia07847 Actinidia chinensis HOM05D001388 ORTHO05D001234 1.5e-10 69.3 72 62.5
Nitab4.5_0004263g0040 Nicotiana tabacum HOM05D001388 ORTHO05D001234 1.9e-10 68.9 72 61.1
Solyc11g028010.2 Solanum lycopersicum HOM05D001388 ORTHO05D001234 1.9e-10 68.9 71 62.0
Sopen11g012480 Solanum pennellii HOM05D001388 ORTHO05D001234 1.9e-10 68.9 71 62.0
Sed0023095 Sechium edule HOM05D001388 ORTHO05D001234 2.5e-10 68.6 71 63.4
CiPaw.03G018800 Carya illinoinensis HOM05D001388 ORTHO05D001234 4.3e-10 67.8 55 70.9
Glyma.12G000700 Glycine max HOM05D001388 ORTHO05D001234 4.3e-10 67.8 55 69.1
Haze_13908 Corylus avellana HOM05D001388 ORTHO05D001234 5.6e-10 67.4 55 70.9
ClCG11G008730 Citrullus lanatus HOM05D001388 ORTHO05D001234 9.5e-10 66.6 55 67.3
Glyma.08G238000 Glycine max HOM05D001388 ORTHO05D001234 9.5e-10 66.6 55 67.3
ClCG01G006840 Citrullus lanatus HOM05D001388 ORTHO05D001234 1.2e-09 66.2 55 69.1
QL09p004813 Quercus lobata HOM05D001388 ORTHO05D001234 1.6e-09 65.9 55 67.3
TPR.G34102 Trifolium pratense HOM05D001388 ORTHO05D001234 2.1e-09 65.5 71 59.2
vmacro00939 Vaccinium macrocarpon HOM05D001388 ORTHO05D001234 2.1e-09 65.5 64 57.8
DCAR_004331 Daucus carota HOM05D001388 ORTHO05D001234 4.7e-09 64.3 71 56.3
PGR042G2147 Punica granatum HOM05D001388 ORTHO05D001234 6.2e-09 63.9 53 64.2
CARHR033350 Cardamine hirsuta HOM05D001388 ORTHO05D001234 8.0e-09 63.5 61 57.4
Lsat_1_v5_gn_6_111600 Lactuca sativa HOM05D001388 ORTHO05D001234 1.4e-08 62.8 58 63.8
Medtr4g032300 Medicago truncatula HOM05D001388 ORTHO05D001234 1.4e-08 62.8 71 59.2
Medtr4g032330 Medicago truncatula HOM05D001388 ORTHO05D001234 1.4e-08 62.8 71 59.2
BolC5t32520H Brassica oleracea HOM05D001388 ORTHO05D001234 1.8e-08 62.4 61 55.7
Aa31LG6G8190 Aethionema arabicum HOM05D001388 ORTHO05D001234 2.3e-08 62.0 68 51.5
Thhalv10007891m.g Eutrema salsugineum HOM05D001388 ORTHO05D001234 2.3e-08 62.0 61 55.7
PGR042G1388 Punica granatum HOM05D001388 ORTHO05D001234 2.3e-08 62.0 53 62.3
PGR042G3614 Punica granatum HOM05D001388 ORTHO05D001234 2.3e-08 62.0 53 62.3
Atru.chr6.116 Acer truncatum HOM05D001388 ORTHO05D001234 3.1e-08 61.6 52 69.2
THA.LOC104806759 Tarenaya hassleriana HOM05D001388 ORTHO05D001234 3.1e-08 61.6 68 52.9
AT1G33970 Arabidopsis thaliana HOM05D001388 ORTHO05D001234 4.0e-08 61.2 61 54.1
BcaC05g27791 Brassica carinata HOM05D001388 ORTHO05D001234 4.0e-08 61.2 61 54.1
A05p24180 Brassica napus HOM05D001388 ORTHO05D001234 4.0e-08 61.2 61 54.1
C05p37870 Brassica napus HOM05D001388 ORTHO05D001234 4.0e-08 61.2 61 54.1
BraA05t21297Z Brassica rapa HOM05D001388 ORTHO05D001234 4.0e-08 61.2 61 54.1
CiPaw.04G012600 Carya illinoinensis HOM05D001388 ORTHO05D001234 4.0e-08 61.2 55 63.6
TWI14G0753 Tripterygium wilfordii HOM05D001388 ORTHO05D001234 5.2e-08 60.8 61 60.7
BcaB03g13686 Brassica carinata HOM05D001388 ORTHO05D001234 6.8e-08 60.5 61 54.1
Ciclev10024505m.g Citrus clementina HOM05D001388 ORTHO05D001234 6.8e-08 60.5 74 55.4
TAR628G0884 Trochodendron aralioides HOM05D001388 ORTHO05D001234 6.8e-08 60.5 58 62.1
Ciclev10021509m.g Citrus clementina HOM05D001388 ORTHO05D001234 8.9e-08 60.1 55 63.6
HanXRQChr12g0381371 Helianthus annuus HOM05D001388 ORTHO05D001234 8.9e-08 60.1 58 60.3
PGR042G1476 Punica granatum HOM05D001388 ORTHO05D001234 1.2e-07 59.7 54 57.4
QL06p011667 Quercus lobata HOM05D001388 ORTHO05D001234 1.2e-07 59.7 56 60.7
SalBow6G3179 Salvia bowleyana HOM05D001388 ORTHO05D001234 1.2e-07 59.7 71 54.9
Ciclev10023614m.g Citrus clementina HOM05D001388 ORTHO05D001234 2.0e-07 58.9 61 60.7
Phvul.011G000400 Phaseolus vulgaris HOM05D001388 ORTHO05D001234 2.0e-07 58.9 71 57.7
PGR042G1394 Punica granatum HOM05D001388 ORTHO05D001234 2.0e-07 58.9 71 50.7
Medtr4g032350 Medicago truncatula HOM05D001388 ORTHO05D001234 4.4e-07 57.8 55 60.0
Potri.013G104800 Populus trichocarpa HOM05D001388 ORTHO05D001234 4.4e-07 57.8 55 60.0
PGR042G0686 Punica granatum HOM05D001388 ORTHO05D001234 4.4e-07 57.8 60 55.0
PGR042G0973 Punica granatum HOM05D001388 ORTHO05D001234 4.4e-07 57.8 60 55.0
arahy.Tifrunner.gnm1.ann1.MV8DP6 Arachis hypogaea HOM05D001388 ORTHO05D001234 5.8e-07 57.4 55 60.0
Duzib177G0163 Durio zibethinus HOM05D001388 ORTHO05D001234 5.8e-07 57.4 53 66.0
Peaxi162Scf00003g03747 Petunia axillaris HOM05D001388 ORTHO05D001234 5.8e-07 57.4 61 52.5
Sabra13G0090500 Salix brachista HOM05D001388 ORTHO05D001234 5.8e-07 57.4 55 61.8
TWI59G0291 Tripterygium wilfordii HOM05D001388 ORTHO05D001234 5.8e-07 57.4 48 68.8
TPR.G34180 Trifolium pratense HOM05D001388 ORTHO05D001234 7.5e-07 57.0 55 58.2
Cc10_g09420 Coffea canephora HOM05D001388 ORTHO05D001234 9.8e-07 56.6 71 49.3
PGR042G1753 Punica granatum HOM05D001388 ORTHO05D001234 9.8e-07 56.6 72 48.6
Ciclev10020994m.g Citrus clementina HOM05D001388 ORTHO05D001234 1.3e-06 56.2 55 60.0
Psat7g226720 Pisum sativum HOM05D001388 ORTHO05D001234 1.3e-06 56.2 55 56.4
ATR1136G193 Amborella trichopoda HOM05D001388 ORTHO05D001234 1.7e-06 55.8 71 49.3
Nitab4.5_0005772g0020 Nicotiana tabacum HOM05D001388 ORTHO05D001234 1.7e-06 55.8 59 55.9
Cc10_g09400 Coffea canephora HOM05D001388 ORTHO05D001234 2.2e-06 55.5 71 54.9
Lj2g0014391 Lotus japonicus HOM05D001388 ORTHO05D001234 2.2e-06 55.5 44 72.7
Potri.019G077300 Populus trichocarpa HOM05D001388 ORTHO05D001234 2.2e-06 55.5 71 54.9
Ciclev10020992m.g Citrus clementina HOM05D001388 ORTHO05D001234 2.9e-06 55.1 55 58.2
Cfa005444 Carpinus fangiana HOM05D001040 ORTHO05D002311 3.7e-06 54.7 50 64.0
VMungo1215G1930 Vigna mungo HOM05D001388 ORTHO05D001234 3.7e-06 54.7 55 58.2
RcHm_v2.0_Chr7g0229211 Rosa chinensis HOM05D001388 ORTHO05D001234 6.4e-06 53.9 71 47.9
Sabra19G0088400 Salix brachista HOM05D001388 ORTHO05D001234 6.4e-06 53.9 55 58.2
Hund26647 Selenicereus undatus HOM05D001388 ORTHO05D001234 6.4e-06 53.9 71 52.1


User provided reference genes

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