Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3C135G1 Lonicera japonica HOM05D001295 ORTHO05D005319 1.3e-159 566.2 275 100.0
Dinv05087 Davidia involucrata HOM05D001295 ORTHO05D005319 1.0e-74 284.3 295 54.9
Actinidia34573 Actinidia chinensis HOM05D001295 ORTHO05D005319 1.6e-72 276.9 297 52.2
GSVIVG01004102001 Vitis vinifera HOM05D001295 ORTHO05D005319 2.4e-68 263.1 290 50.0
Lj3A83T16 Lonicera japonica HOM05D001295 ORTHO05D005319 5.6e-65 251.9 177 73.4
Lsat_1_v5_gn_3_110661 Lactuca sativa HOM05D001295 ORTHO05D005319 8.1e-64 248.1 300 48.7
TAR633G1947 Trochodendron aralioides HOM05D001295 ORTHO05D005319 2.0e-62 243.4 294 50.0
Peaxi162Scf00180g00045 Petunia axillaris HOM05D001295 ORTHO05D005319 2.9e-61 239.6 293 47.1
CSS0006680 Camellia sinensis var. sinensis HOM05D001295 ORTHO05D005319 4.9e-61 238.8 229 56.8
CSS0045865 Camellia sinensis var. sinensis HOM05D001295 ORTHO05D005319 4.9e-61 238.8 229 56.8
Sopen06g029480 Solanum pennellii HOM05D001295 ORTHO05D005319 6.4e-61 238.4 294 46.9
PGSC0003DMG400026920 Solanum tuberosum HOM05D001295 ORTHO05D005319 1.1e-60 237.7 293 47.1
MSTRG.4291 Avicennia marina HOM05D001295 ORTHO05D005319 5.4e-60 235.3 285 47.0
Oeu020777.1 Olea europaea HOM05D001295 ORTHO05D005319 5.4e-60 235.3 292 47.3
QL10p051312 Quercus lobata HOM05D001295 ORTHO05D005319 1.6e-59 233.8 214 56.5
Cfa015203 Carpinus fangiana HOM05D001295 ORTHO05D005319 2.7e-59 233.0 214 57.0
Ciclev10021666m.g Citrus clementina HOM05D001295 ORTHO05D005319 6.0e-59 231.9 226 52.7
HanXRQChr13g0419451 Helianthus annuus HOM05D001295 ORTHO05D005319 7.9e-59 231.5 215 58.1
QL10p051666 Quercus lobata HOM05D001295 ORTHO05D005319 1.0e-58 231.1 210 58.1
Solyc06g073130.4 Solanum lycopersicum HOM05D001295 ORTHO05D005319 1.0e-58 231.1 224 54.9
Prupe.1G199500 Prunus persica HOM05D001295 ORTHO05D005319 5.1e-58 228.8 286 45.8
Thecc.04G173300 Theobroma cacao HOM05D001295 ORTHO05D005319 1.1e-57 227.6 281 46.3
CAN.G65.159 Capsicum annuum HOM05D001295 ORTHO05D005319 1.9e-57 226.9 294 44.9
AUR62023829 Chenopodium quinoa HOM05D001295 ORTHO05D005319 2.5e-57 226.5 231 52.4
COL.COLO4_09274 Corchorus olitorius HOM05D001295 ORTHO05D005319 5.6e-57 225.3 284 45.4
Nitab4.5_0002553g0060 Nicotiana tabacum HOM05D001295 ORTHO05D005319 5.6e-57 225.3 337 43.6
Migut.G01307 Erythranthe guttata HOM05D001295 ORTHO05D005319 4.8e-56 222.2 286 44.4
DCAR_028425 Daucus carota HOM05D001295 ORTHO05D005319 6.2e-56 221.9 264 48.9
AUR62002356 Chenopodium quinoa HOM05D001295 ORTHO05D005319 8.1e-56 221.5 247 48.6
Ciclev10021418m.g Citrus clementina HOM05D001295 ORTHO05D005319 8.1e-56 221.5 206 56.3
SalBow8G2942 Salvia bowleyana HOM05D001295 ORTHO05D005319 8.1e-56 221.5 302 42.1
CiPaw.01G095500 Carya illinoinensis HOM05D001295 ORTHO05D005319 1.4e-55 220.7 204 58.3
Sc21g0002910 Simmondsia chinensis HOM05D001295 ORTHO05D005319 5.3e-55 218.8 232 49.6
Aqoxy5G00377 Aquilegia oxysepala HOM05D001295 ORTHO05D005319 1.2e-54 217.6 209 52.6
Thecc.04G173200 Theobroma cacao HOM05D001295 ORTHO05D005319 1.2e-54 217.6 211 55.5
Atru.chr4.1272 Acer truncatum HOM05D001295 ORTHO05D005319 1.5e-54 217.2 287 44.3
Manes.11G126000 Manihot esculenta HOM05D001295 ORTHO05D005319 9.9e-54 214.5 224 48.7
PSO017G5265 Papaver somniferum HOM05D001295 ORTHO05D005319 1.7e-53 213.8 218 50.9
Potri.007G132100 Populus trichocarpa HOM05D001295 ORTHO05D005319 1.7e-53 213.8 231 48.1
Cc03_g12290 Coffea canephora HOM05D001295 ORTHO05D005319 2.2e-53 213.4 297 45.1
COL.COLO4_21796 Corchorus olitorius HOM05D001295 ORTHO05D005319 2.2e-53 213.4 230 50.9
Sabra07G0107500 Salix brachista HOM05D001295 ORTHO05D005319 4.9e-53 212.2 213 55.4
Hund12401 Selenicereus undatus HOM05D001295 ORTHO05D005319 6.4e-53 211.8 245 50.6
PSO837G0039 Papaver somniferum HOM05D001295 ORTHO05D005319 8.4e-53 211.5 218 50.9
Sabra07G0119300 Salix brachista HOM05D001295 ORTHO05D005319 4.2e-52 209.1 213 55.9
MD04G1046100 Malus domestica HOM05D001295 ORTHO05D005319 5.5e-52 208.8 290 42.1
TWI15G0408 Tripterygium wilfordii HOM05D001295 ORTHO05D005319 1.6e-51 207.2 234 47.0
Gohir.D08G098300 Gossypium hirsutum HOM05D001295 ORTHO05D005319 4.6e-51 205.7 232 49.1
Nn1g09559 Nelumbo nucifera HOM05D001295 ORTHO05D005319 6.0e-51 205.3 171 58.5
Gorai.004G105900 Gossypium raimondii HOM05D001295 ORTHO05D005319 1.0e-50 204.5 232 48.7
Eucgr.H00340 Eucalyptus grandis HOM05D001295 ORTHO05D005319 2.3e-50 203.4 223 50.2
Manes.04G047700 Manihot esculenta HOM05D001295 ORTHO05D005319 3.9e-50 202.6 207 52.7
Phvul.005G154600 Phaseolus vulgaris HOM05D001295 ORTHO05D005319 3.9e-50 202.6 208 55.3
VMungo1080G0958 Vigna mungo HOM05D001295 ORTHO05D005319 3.9e-50 202.6 213 52.1
Gohir.A02G093300 Gossypium hirsutum HOM05D001295 ORTHO05D005319 5.1e-50 202.2 218 49.1
Gorai.005G126300 Gossypium raimondii HOM05D001295 ORTHO05D005319 7.4e-49 198.4 219 48.4
ATR0743G262 Amborella trichopoda HOM05D001295 ORTHO05D005319 1.6e-48 197.2 294 39.1
PGR142G2463 Punica granatum HOM05D001295 ORTHO05D005319 1.6e-48 197.2 215 48.8
Glyma.15G028500 Glycine max HOM05D001295 ORTHO05D005319 1.8e-47 193.7 213 51.2
Migut.G01331 Erythranthe guttata HOM05D001295 ORTHO05D005319 3.1e-47 193.0 196 52.6
Lj3g0016601 Lotus japonicus HOM05D001295 ORTHO05D005319 6.9e-47 191.8 284 43.7
Sed0000422 Sechium edule HOM05D001295 ORTHO05D005319 6.9e-47 191.8 212 50.9
CsaV3_6G006850 Cucumis sativus L. HOM05D005724 ORTHO05D006636 2.6e-46 189.9 220 43.2
ClCG06G001010 Citrullus lanatus HOM05D001295 ORTHO05D005319 7.6e-46 188.3 209 45.5
Duzib212G0222 Durio zibethinus HOM05D001295 ORTHO05D005319 7.6e-46 188.3 230 45.7
TPR.G6512 Trifolium pratense HOM05D001295 ORTHO05D005319 2.2e-45 186.8 221 48.9
MELO3C022439.2 Cucumis melo HOM05D001295 ORTHO05D005319 2.9e-45 186.4 243 41.6
Psat5g290520 Pisum sativum HOM05D001295 ORTHO05D005319 2.9e-45 186.4 209 49.3
Migut.G01305 Erythranthe guttata HOM05D001295 ORTHO05D005319 4.9e-45 185.7 184 52.2
HPP92_007597 Vanilla planifolia HOM05D001295 ORTHO05D005319 6.5e-45 185.3 203 48.3
CsaV3_4G002500 Cucumis sativus L. HOM05D001295 ORTHO05D005319 4.2e-44 182.6 218 47.7
SGA_v2.0_scaffold12G06175 Striga asiatica HOM05D001295 ORTHO05D005319 4.2e-44 182.6 176 52.3
ClCG07G011710 Citrullus lanatus HOM05D001295 ORTHO05D005319 5.5e-44 182.2 226 49.6
AL3G12950 Arabidopsis lyrata HOM05D001295 ORTHO05D005319 9.3e-44 181.4 215 47.4
Ca_01246_v3 Cicer arietinum L. HOM05D001295 ORTHO05D005319 9.3e-44 181.4 212 48.1
Medtr2g099125 Medicago truncatula HOM05D001295 ORTHO05D005319 9.3e-44 181.4 199 50.8
THA.LOC104803837 Tarenaya hassleriana HOM05D001295 ORTHO05D005319 9.3e-44 181.4 155 55.5
Lalb_Chr22g0352051 Lupinus albus HOM05D001295 ORTHO05D005319 1.2e-43 181.0 207 49.3
RcHm_v2.0_Chr6g0292651 Rosa chinensis HOM05D001295 ORTHO05D005319 1.2e-43 181.0 213 47.4
Migut.G01326 Erythranthe guttata HOM05D001295 ORTHO05D005319 2.7e-43 179.9 167 54.5
Gohir.A08G092500 Gossypium hirsutum HOM05D001295 ORTHO05D005319 2.7e-43 179.9 232 45.7
Lalb_Chr14g0372571 Lupinus albus HOM05D001295 ORTHO05D005319 4.6e-43 179.1 228 44.3
Rhsim09G0020700 Rhododendron simsii HOM05D001295 ORTHO05D005319 4.6e-43 179.1 307 39.7
Sabra07G0119100 Salix brachista HOM05D001295 ORTHO05D005319 4.6e-43 179.1 158 57.6
ECA240G1882 Erigeron canadensis HOM05D001295 ORTHO05D005319 1.3e-42 177.6 136 62.5
Sabra07G0119200 Salix brachista HOM05D001295 ORTHO05D005319 1.3e-42 177.6 154 58.4
THA.LOC104820845 Tarenaya hassleriana HOM05D001295 ORTHO05D005319 3.0e-42 176.4 210 48.6
Carub.0004s2592 Capsella rubella HOM05D001295 ORTHO05D005319 5.1e-42 175.6 207 43.5
CARHR077360 Cardamine hirsuta HOM05D001295 ORTHO05D005319 5.1e-42 175.6 209 45.5
FAN27G1301 Fragaria x ananassa HOM05D001295 ORTHO05D005319 6.7e-42 175.3 193 51.3
Sed0017723 Sechium edule HOM05D001295 ORTHO05D005319 6.7e-42 175.3 157 54.1
Nitab4.5_0001586g0250 Nicotiana tabacum HOM05D001295 ORTHO05D005319 8.7e-42 174.9 157 55.4
AT3G03320 Arabidopsis thaliana HOM05D001295 ORTHO05D005319 1.9e-41 173.7 209 45.0
arahy.Tifrunner.gnm1.ann1.982DXJ Arachis hypogaea HOM05D001295 ORTHO05D005319 1.9e-41 173.7 203 46.8
Thhalv10021391m.g Eutrema salsugineum HOM05D001295 ORTHO05D005319 1.9e-41 173.7 209 46.9
FAN24G0827 Fragaria x ananassa HOM05D001295 ORTHO05D005319 1.9e-41 173.7 220 46.4
vmacro00675 Vaccinium macrocarpon HOM05D001295 ORTHO05D005319 1.9e-41 173.7 184 48.4
A05p43870 Brassica napus HOM05D001295 ORTHO05D005319 3.3e-41 172.9 199 49.7
FvH4_2g24830 Fragaria vesca HOM05D001295 ORTHO05D005319 4.3e-41 172.6 209 47.8
BcaC05g30303 Brassica carinata HOM05D001295 ORTHO05D005319 7.4e-41 171.8 204 49.0
BraA05t23124Z Brassica rapa HOM05D001295 ORTHO05D005319 7.4e-41 171.8 199 49.2
Carub.0003s0249 Capsella rubella HOM05D001295 ORTHO05D005319 7.4e-41 171.8 206 48.1
Sp4g25550 Schrenkiella parvula HOM05D001295 ORTHO05D005319 2.8e-40 169.9 202 43.6
BolC5t35010H Brassica oleracea HOM05D001295 ORTHO05D005319 4.8e-40 169.1 189 50.3
C05p63460 Brassica napus HOM05D001295 ORTHO05D005319 6.3e-40 168.7 194 50.0
Aa31LG1G25200 Aethionema arabicum HOM05D001295 ORTHO05D005319 1.1e-39 167.9 197 44.7
CARHR138550 Cardamine hirsuta HOM05D001295 ORTHO05D005319 1.1e-39 167.9 151 50.3
Thhalv10001762m.g Eutrema salsugineum HOM05D001295 ORTHO05D005319 2.4e-39 166.8 195 42.6
AT2G43465 Arabidopsis thaliana HOM05D001295 ORTHO05D005319 6.9e-39 165.2 204 42.6
Gohir.D02G111400 Gossypium hirsutum HOM05D001295 ORTHO05D005319 9.0e-39 164.9 218 42.7
A05p03770 Brassica napus HOM05D001295 ORTHO05D005319 2.0e-38 163.7 196 44.4
Sp3g02350 Schrenkiella parvula HOM05D001295 ORTHO05D005319 1.0e-37 161.4 214 43.9
BolC4t22080H Brassica oleracea HOM05D001295 ORTHO05D005319 1.3e-37 161.0 194 45.4
AL4G42200 Arabidopsis lyrata HOM05D001295 ORTHO05D005319 1.7e-37 160.6 203 42.9
BcaC02g12392 Brassica carinata HOM05D001295 ORTHO05D005319 1.7e-37 160.6 194 45.9
C04p04470 Brassica napus HOM05D001295 ORTHO05D005319 1.7e-37 160.6 194 45.9
Aa31LG5G13780 Aethionema arabicum HOM05D001295 ORTHO05D005319 5.0e-37 159.1 227 41.4
BraA05t19365Z Brassica rapa HOM05D001295 ORTHO05D005319 5.0e-37 159.1 204 43.1
BcaB02g08938 Brassica carinata HOM05D001295 ORTHO05D005319 6.5e-37 158.7 195 44.1
C01p44730 Brassica napus HOM05D001295 ORTHO05D005319 6.5e-37 158.7 150 50.0
Haze_01445 Corylus avellana HOM05D001295 ORTHO05D005319 6.5e-37 158.7 153 54.9
arahy.Tifrunner.gnm1.ann1.1HI5HP Arachis hypogaea HOM05D001295 ORTHO05D005319 7.2e-36 155.2 229 41.5
arahy.Tifrunner.gnm1.ann1.CA0DYB Arachis hypogaea HOM05D001295 ORTHO05D005319 1.6e-35 154.1 229 41.0
FAN15G1214 Fragaria x ananassa HOM05D001295 ORTHO05D005319 2.7e-35 153.3 208 43.3
EL10Ac3g06020 Beta vulgaris HOM05D001295 ORTHO05D005319 3.5e-35 152.9 215 44.2
Zm00001eb064040 Zea mays HOM05D001295 ORTHO05D005319 9.7e-33 144.8 209 38.8
SalBow5G4879 Salvia bowleyana HOM05D001295 ORTHO05D005319 8.2e-32 141.7 165 45.5
Mapoly0209s0009 Marchantia polymorpha HOM05D001295 ORTHO05D005319 3.4e-30 136.3 146 46.6
A09p42860 Brassica napus HOM05D001295 ORTHO05D005319 1.4e-28 131.0 157 45.9
AagrBONN_evm.TU.Sc2ySwM_228.190 Anthoceros agrestis HOM05D001295 ORTHO05D005319 4.2e-28 129.4 168 39.3
Pp3c13_1370 Physcomitrium patens HOM05D001295 ORTHO05D005319 4.2e-28 129.4 162 42.6
BolC2t06464H Brassica oleracea HOM05D001295 ORTHO05D005319 3.8e-21 106.3 187 37.4
Sabra17G0001700 Salix brachista HOM05D001295 ORTHO05D005319 1.6e-19 100.9 109 51.4
Lj3g0015879 Lotus japonicus HOM05D001295 ORTHO05D005319 2.3e-18 97.1 70 70.0
vmacro00676 Vaccinium macrocarpon HOM05D001295 ORTHO05D005319 3.0e-18 96.7 131 45.8
RhsimUnG0137700 Rhododendron simsii HOM05D001295 ORTHO05D005319 2.0e-17 94.0 183 37.2
SMO337G0100 Selaginella moellendorffii HOM05D001295 ORTHO05D005319 2.0e-17 94.0 92 52.2
Hma1.2p1_0401F.1_g144800 Hydrangea macrophylla HOM05D001295 ORTHO05D005319 5.3e-15 85.9 128 41.4
Sabra17G0000500 Salix brachista HOM05D001295 ORTHO05D005319 1.2e-14 84.7 80 51.2
Sabra17G0001500 Salix brachista HOM05D001295 ORTHO05D005319 2.6e-14 83.6 78 51.3
Sabra17G0015200 Salix brachista HOM05D001295 ORTHO05D005319 1.1e-12 78.2 153 35.9
AL4G36180 Arabidopsis lyrata HOM05D001295 ORTHO05D005319 3.0e-10 70.1 126 35.7
SEGI_20516 Sequoiadendron giganteum HOM05D001295 ORTHO05D005319 9.1e-07 58.5 96 33.3


User provided reference genes

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