Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3C1069T6 Lonicera japonica HOM05D002231 ORTHO05D006103 4.0e-111 404.8 211 100.0
Dinv17566 Davidia involucrata HOM05D002231 ORTHO05D005593 1.1e-71 273.9 200 74.0
Dinv10954 Davidia involucrata HOM05D002231 ORTHO05D006103 4.0e-71 271.9 200 77.0
Hma1.2p1_0275F.1_g110740 Hydrangea macrophylla HOM05D002231 ORTHO05D006103 9.0e-71 270.8 206 71.8
CSS0047868 Camellia sinensis var. sinensis HOM05D002231 ORTHO05D006103 1.5e-70 270.0 208 73.6
CSS0048016 Camellia sinensis var. sinensis HOM05D002231 ORTHO05D006103 1.5e-70 270.0 208 73.6
Thecc.02G207900 Theobroma cacao HOM05D002231 ORTHO05D006103 1.5e-65 253.4 206 68.4
Rhsim12G0025500 Rhododendron simsii HOM05D002231 ORTHO05D006103 2.4e-63 246.1 201 67.7
Actinidia30646 Actinidia chinensis HOM05D002231 ORTHO05D006103 9.0e-63 244.2 200 69.0
MSTRG.501 Avicennia marina HOM05D002231 ORTHO05D006103 2.0e-62 243.0 203 68.0
CiPaw.05G109300 Carya illinoinensis HOM05D002231 ORTHO05D006103 2.0e-62 243.0 200 68.5
Nn3g16455 Nelumbo nucifera HOM05D002231 ORTHO05D006103 2.0e-62 243.0 205 67.8
TWI36G0137 Tripterygium wilfordii HOM05D002231 ORTHO05D006103 3.8e-61 238.8 200 66.0
Sopen04g017470 Solanum pennellii HOM05D002231 ORTHO05D006103 4.9e-61 238.4 209 64.1
Lsat_1_v5_gn_4_3541 Lactuca sativa HOM05D002231 ORTHO05D006103 6.4e-61 238.0 203 68.0
GSVIVG01010488001 Vitis vinifera HOM05D002231 ORTHO05D006103 6.4e-61 238.0 200 68.0
Cfa009373 Carpinus fangiana HOM05D002231 ORTHO05D006103 8.4e-61 237.7 205 65.9
Atru.chr11.2328 Acer truncatum HOM05D002231 ORTHO05D006103 1.1e-60 237.3 202 66.3
Nitab4.5_0002558g0010 Nicotiana tabacum HOM05D002231 ORTHO05D006103 1.9e-60 236.5 208 64.9
Ciclev10032446m.g Citrus clementina HOM05D002231 ORTHO05D006103 3.2e-60 235.7 201 67.2
HanXRQChr12g0385441 Helianthus annuus HOM05D002231 ORTHO05D006103 3.2e-60 235.7 212 63.2
CANSAT01G1083 Cannabis sativa HOM05D002231 ORTHO05D006103 5.4e-60 235.0 200 64.5
Solyc04g045580.4 Solanum lycopersicum HOM05D002231 ORTHO05D006103 7.1e-60 234.6 205 64.4
CiPaw.06G102900 Carya illinoinensis HOM05D002231 ORTHO05D006103 9.3e-60 234.2 197 68.0
Gohir.A01G160300 Gossypium hirsutum HOM05D002231 ORTHO05D006103 9.3e-60 234.2 207 65.2
Gorai.002G183300 Gossypium raimondii HOM05D002231 ORTHO05D006103 1.2e-59 233.8 201 66.2
Duzib251G0325 Durio zibethinus HOM05D002231 ORTHO05D006103 2.1e-59 233.0 212 63.7
TWI18G1086 Tripterygium wilfordii HOM05D002231 ORTHO05D006103 6.0e-59 231.5 200 64.5
RcHm_v2.0_Chr4g0430201 Rosa chinensis HOM05D002231 ORTHO05D006103 1.8e-58 229.9 200 65.5
Gohir.D01G147100 Gossypium hirsutum HOM05D002231 ORTHO05D006103 2.3e-58 229.6 201 65.7
Prupe.1G225400 Prunus persica HOM05D002231 ORTHO05D006103 3.9e-58 228.8 201 67.2
Manes.12G011000 Manihot esculenta HOM05D002231 ORTHO05D006103 6.7e-58 228.0 208 63.5
MD16G1119800 Malus domestica HOM05D002231 ORTHO05D006103 1.1e-57 227.3 200 66.0
Cc11_g16940 Coffea canephora HOM05D002231 ORTHO05D006103 1.9e-57 226.5 200 66.5
FAN22G0585 Fragaria x ananassa HOM05D002231 ORTHO05D006103 1.9e-57 226.5 200 64.5
MD13G1119600 Malus domestica HOM05D002231 ORTHO05D006103 2.5e-57 226.1 200 66.0
Aqoxy5G03366 Aquilegia oxysepala HOM05D002231 ORTHO05D006103 3.3e-57 225.7 204 67.6
FAN12G0590 Fragaria x ananassa HOM05D002231 ORTHO05D006103 3.3e-57 225.7 200 64.5
SGA_v2.0_scaffold9G04675 Striga asiatica HOM05D002231 ORTHO05D006103 3.3e-57 225.7 200 62.5
Nitab4.5_0000067g0140 Nicotiana tabacum HOM05D002231 ORTHO05D006103 4.3e-57 225.3 233 58.4
Migut.J00960 Erythranthe guttata HOM05D002231 ORTHO05D006103 5.6e-57 224.9 204 63.7
FvH4_4g23720 Fragaria vesca HOM05D002231 ORTHO05D006103 7.4e-57 224.6 200 65.0
FAN07G0699 Fragaria x ananassa HOM05D002231 ORTHO05D006103 7.4e-57 224.6 200 64.5
MSTRG.8006 Avicennia marina HOM05D002231 ORTHO05D006103 1.6e-56 223.4 212 60.4
FAN17G0493 Fragaria x ananassa HOM05D002231 ORTHO05D005593 2.8e-56 222.6 200 64.0
TAR371G0929 Trochodendron aralioides HOM05D005804 ORTHO05D006849 6.2e-56 221.5 202 62.4
QL03p052604 Quercus lobata HOM05D002231 ORTHO05D006103 1.2e-54 217.2 251 54.6
EL10Ac6g13507 Beta vulgaris HOM05D002231 ORTHO05D006103 7.6e-54 214.5 200 63.5
Gorai.012G176000 Gossypium raimondii HOM05D002231 ORTHO05D006103 7.6e-54 214.5 206 60.7
Glyma.18G006100 Glycine max HOM05D002231 ORTHO05D006103 1.3e-53 213.8 200 61.0
Gohir.A04G139800 Gossypium hirsutum HOM05D002231 ORTHO05D006103 1.7e-53 213.4 207 60.9
TPR.G17792 Trifolium pratense HOM05D002231 ORTHO05D006103 1.7e-53 213.4 201 60.2
TAR629G1028 Trochodendron aralioides HOM05D002231 ORTHO05D006103 1.7e-53 213.4 200 61.5
PSO017G2330 Papaver somniferum HOM05D002231 ORTHO05D006103 2.2e-53 213.0 202 64.4
Sc11g0000450 Simmondsia chinensis HOM05D002231 ORTHO05D006103 2.9e-53 212.6 210 60.5
MBI11_g05330_MAGBIO Magnolia biondii HOM05D002231 ORTHO05D006103 3.8e-53 212.2 199 64.8
Oeu049136.1 Olea europaea HOM05D002231 ORTHO05D006103 3.8e-53 212.2 198 61.1
Potri.001G056500 Populus trichocarpa HOM05D002231 ORTHO05D006103 3.8e-53 212.2 208 63.0
Glyma.11G250900 Glycine max HOM05D002231 ORTHO05D006103 4.9e-53 211.8 200 61.0
Lalb_Chr23g0278101 Lupinus albus HOM05D002231 ORTHO05D006103 6.5e-53 211.5 172 66.3
AUR62028925 Chenopodium quinoa HOM05D002231 ORTHO05D006103 8.4e-53 211.1 200 62.5
Gohir.D04G183000 Gossypium hirsutum HOM05D002231 ORTHO05D006103 8.4e-53 211.1 208 60.1
vmacro01059 Vaccinium macrocarpon HOM05D002231 ORTHO05D006103 8.4e-53 211.1 267 51.3
Phvul.001G262200 Phaseolus vulgaris HOM05D002231 ORTHO05D006103 1.4e-52 210.3 148 75.0
Lsat_1_v5_gn_3_31041 Lactuca sativa HOM05D002231 ORTHO05D006103 2.5e-52 209.5 194 59.3
Ca_16456_v3 Cicer arietinum L. HOM05D002231 ORTHO05D006103 4.2e-52 208.8 200 59.5
Medtr3g085280 Medicago truncatula HOM05D002231 ORTHO05D006103 4.2e-52 208.8 202 60.9
Duzib248G1458 Durio zibethinus HOM05D002231 ORTHO05D006103 7.1e-52 208.0 182 64.8
Psat5g096440 Pisum sativum HOM05D002231 ORTHO05D006103 9.3e-52 207.6 201 59.7
Oeu029193.1 Olea europaea HOM05D002231 ORTHO05D006103 1.2e-51 207.2 175 68.6
arahy.Tifrunner.gnm1.ann1.4LX5KX Arachis hypogaea HOM05D002231 ORTHO05D006103 2.1e-51 206.5 135 83.0
arahy.Tifrunner.gnm1.ann1.A5UQ16 Arachis hypogaea HOM05D002231 ORTHO05D006103 2.1e-51 206.5 135 83.0
Potri.003G172000 Populus trichocarpa HOM05D002231 ORTHO05D006103 3.5e-51 205.7 203 59.1
VMungo1383G1118 Vigna mungo HOM05D002231 ORTHO05D006103 3.5e-51 205.7 135 78.5
Manes.13G011701 Manihot esculenta HOM05D002231 ORTHO05D006103 6.0e-51 204.9 149 73.8
Eucgr.B03496 Eucalyptus grandis HOM05D002231 ORTHO05D006103 7.9e-51 204.5 203 57.1
Lj6g0006303 Lotus japonicus HOM05D002231 ORTHO05D006103 7.9e-51 204.5 156 71.2
Sed0020663 Sechium edule HOM05D002231 ORTHO05D006103 1.3e-50 203.8 203 60.1
PGR102G0892 Punica granatum HOM05D002231 ORTHO05D006103 2.3e-50 203.0 203 63.5
Nn4g22308 Nelumbo nucifera HOM05D002231 ORTHO05D006103 3.0e-50 202.6 188 61.7
Sabra03G0125900 Salix brachista HOM05D002231 ORTHO05D005593 3.9e-50 202.2 214 56.5
COL.COLO4_20407 Corchorus olitorius HOM05D002231 ORTHO05D006103 6.7e-50 201.4 180 62.8
Lalb_Chr08g0230621 Lupinus albus HOM05D002231 ORTHO05D006103 6.7e-50 201.4 154 73.4
unitig_747.g21125 Utricularia gibba HOM05D002231 ORTHO05D006103 6.7e-50 201.4 194 58.8
CDE02G1146 Ceratophyllum demersum HOM05D002231 ORTHO05D006103 8.7e-50 201.1 202 61.4
ClCG11G013620 Citrullus lanatus HOM05D002231 ORTHO05D006103 8.7e-50 201.1 192 61.5
BcaC05g26745 Brassica carinata HOM05D002231 ORTHO05D006103 2.5e-49 199.5 205 56.1
ECA234G2919 Erigeron canadensis HOM05D002231 ORTHO05D006103 2.5e-49 199.5 109 89.0
CsaV3_5G030240 Cucumis sativus L. HOM05D002231 ORTHO05D006103 4.3e-49 198.7 197 58.4
Aa31LG7G9850 Aethionema arabicum HOM05D002231 ORTHO05D006103 5.7e-49 198.4 207 57.0
Sp1g23610 Schrenkiella parvula HOM05D002231 ORTHO05D006103 7.4e-49 198.0 205 55.6
AT1G27385 Arabidopsis thaliana HOM05D002231 ORTHO05D006103 2.1e-48 196.4 200 56.0
Carub.0001s2592 Capsella rubella HOM05D002231 ORTHO05D006103 2.1e-48 196.4 200 55.5
Sabra01G0040900 Salix brachista HOM05D002231 ORTHO05D006103 2.1e-48 196.4 218 59.2
AL1G40790 Arabidopsis lyrata HOM05D002231 ORTHO05D006103 4.8e-48 195.3 205 54.6
BcaB03g13989 Brassica carinata HOM05D002231 ORTHO05D006103 4.8e-48 195.3 202 55.4
C07p17810 Brassica napus HOM05D002231 ORTHO05D006103 4.8e-48 195.3 202 55.9
BolC7t42287H Brassica oleracea HOM05D002231 ORTHO05D006103 4.8e-48 195.3 202 55.9
BraA07t28971Z Brassica rapa HOM05D002231 ORTHO05D006103 4.8e-48 195.3 202 55.4
MELO3C011862.2 Cucumis melo HOM05D002231 ORTHO05D006103 4.8e-48 195.3 199 57.3
Haze_12423 Corylus avellana HOM05D002231 ORTHO05D006103 6.2e-48 194.9 174 65.5
CARHR026970 Cardamine hirsuta HOM05D002231 ORTHO05D006103 8.2e-48 194.5 202 55.4
BcaC06g35283 Brassica carinata HOM05D002231 ORTHO05D006103 1.1e-47 194.1 202 55.9
A07p11870 Brassica napus HOM05D002231 ORTHO05D006103 1.4e-47 193.7 202 55.4
BraA09t39361Z Brassica rapa HOM05D002231 ORTHO05D006103 4.1e-47 192.2 200 55.0
A09p38550 Brassica napus HOM05D002231 ORTHO05D006103 6.9e-47 191.4 200 54.5
Hund25467 Selenicereus undatus HOM05D002231 ORTHO05D006103 1.2e-46 190.7 201 55.2
BcaC05g26552 Brassica carinata HOM05D002231 ORTHO05D006103 4.5e-46 188.7 200 53.0
BolC5t31328H Brassica oleracea HOM05D002231 ORTHO05D006103 1.0e-45 187.6 201 53.7
Peaxi162Scf00518g00424 Petunia axillaris HOM05D002231 ORTHO05D006103 1.0e-45 187.6 148 68.9
THA.LOC104807538 Tarenaya hassleriana HOM05D002231 ORTHO05D006103 1.0e-45 187.6 207 53.6
Phvul.L002246 Phaseolus vulgaris HOM05D002231 ORTHO05D006103 1.3e-45 187.2 200 56.5
Thhalv10008813m.g Eutrema salsugineum HOM05D002231 ORTHO05D006103 2.2e-45 186.4 200 54.5
C05p26090 Brassica napus HOM05D002231 ORTHO05D006103 5.0e-45 185.3 200 53.5
SalBow1G3407 Salvia bowleyana HOM05D002231 ORTHO05D006103 1.4e-44 183.7 276 44.6
DCAR_026462 Daucus carota HOM05D002231 ORTHO05D006103 5.5e-44 181.8 198 53.5
Glyma.08G104500 Glycine max HOM05D002231 ORTHO05D006103 7.1e-44 181.4 136 69.1
HanXRQChr06g0174651 Helianthus annuus HOM05D002231 ORTHO05D006103 7.9e-43 177.9 194 51.5
Ah.02g130890 Amaranthus hybridus HOM05D002231 ORTHO05D006103 6.7e-42 174.9 200 56.5
AUR62005623 Chenopodium quinoa HOM05D002231 ORTHO05D006103 1.1e-41 174.1 176 60.2
Nitab4.5_0000155g0190 Nicotiana tabacum HOM05D002231 ORTHO05D006103 1.5e-41 173.7 174 56.3
Os04g0386500 Oryza sativa ssp. japonica HOM05D002231 ORTHO05D006103 3.3e-41 172.6 110 75.5
ECA246G2515 Erigeron canadensis HOM05D002231 ORTHO05D006103 5.7e-41 171.8 190 52.6
Zm00001eb085510 Zea mays HOM05D002231 ORTHO05D006103 7.4e-41 171.4 110 74.5
Cpa.g.sc808.1 Carica papaya HOM05D002231 ORTHO05D006103 9.7e-41 171.0 99 84.8
SalBow2G1775 Salvia bowleyana HOM05D002231 ORTHO05D006103 9.7e-41 171.0 174 57.5
Lj4g0021495 Lotus japonicus HOM05D002231 ORTHO05D006103 1.3e-40 170.6 217 50.7
Os02g0507400 Oryza sativa ssp. japonica HOM05D002231 ORTHO05D006103 1.3e-40 170.6 112 73.2
Nitab4.5_0004003g0010 Nicotiana tabacum HOM05D002231 ORTHO05D006103 3.7e-40 169.1 178 57.3
Zm00001eb421060 Zea mays HOM05D002231 ORTHO05D006103 4.8e-40 168.7 110 73.6
DCAR_007004 Daucus carota HOM05D002231 ORTHO05D006103 6.3e-40 168.3 140 66.4
SalBow8G1223 Salvia bowleyana HOM05D002231 ORTHO05D006103 3.1e-39 166.0 204 51.0
ATR0059G025 Amborella trichopoda HOM05D002231 ORTHO05D006103 7.2e-36 154.8 109 74.3
ECA233G1565 Erigeron canadensis HOM05D002231 ORTHO05D006103 7.9e-35 151.4 110 70.0
HanXRQChr08g0207851 Helianthus annuus HOM05D002231 ORTHO05D006103 5.7e-33 145.2 139 57.6
AagrBONN_evm.TU.Sc2ySwM_368.423 Anthoceros agrestis HOM05D002231 ORTHO05D006103 1.8e-31 140.2 117 62.4
SMO246G0027 Selaginella moellendorffii HOM05D002231 ORTHO05D006103 5.3e-31 138.7 112 63.4
SMO364G0411 Selaginella moellendorffii HOM05D002231 ORTHO05D006103 5.9e-30 135.2 113 62.8
Pp3c15_19360 Physcomitrium patens HOM05D002231 ORTHO05D006103 7.7e-30 134.8 121 60.3
arahy.Tifrunner.gnm1.ann1.1IJF7J Arachis hypogaea HOM05D002231 ORTHO05D006103 2.2e-29 133.3 157 51.0
arahy.Tifrunner.gnm1.ann1.RN2E3G Arachis hypogaea HOM05D002231 ORTHO05D006103 2.5e-28 129.8 82 78.0
Pp3c9_19480 Physcomitrium patens HOM05D002231 ORTHO05D006103 4.2e-28 129.0 124 56.5
CBR_g57027 Chara braunii HOM05D002231 ORTHO05D006103 3.6e-27 125.9 111 55.9
Lsat_1_v5_gn_4_56001 Lactuca sativa HOM05D002231 ORTHO05D006103 3.7e-24 115.9 130 49.2
PRCOL_00004939 Prasinoderma coloniale HOM05D002231 ORTHO05D006103 3.0e-18 96.3 119 42.0
TAR383G1026 Trochodendron aralioides HOM05D002231 ORTHO05D006103 1.1e-17 94.4 127 51.2
Cre02.g074700 Chlamydomonas reinhardtii HOM05D002231 ORTHO05D006103 3.8e-13 79.3 118 41.5
Cre12.g508300 Chlamydomonas reinhardtii HOM05D002231 ORTHO05D006103 8.0e-11 71.6 66 56.1
RcHm_v2.0_Chr3g0491761 Rosa chinensis HOM05D002231 ORTHO05D006103 1.8e-10 70.5 41 85.4
CDE05G2241 Ceratophyllum demersum HOM05D001859 ORTHO05D001836 4.0e-10 69.3 51 66.7
MCO02G005 Micromonas commoda HOM05D003605 ORTHO05D004292 5.2e-10 68.9 87 40.2
TAR636G2964 Trochodendron aralioides HOM05D002231 ORTHO05D006103 2.8e-08 63.2 51 68.6
C02p58440 Brassica napus HOM05D001393 ORTHO05D032808 6.3e-08 62.0 39 71.8


User provided reference genes

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