Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3C1043T17 Lonicera japonica HOM05D004011 ORTHO05D005290 2.2e-279 964.9 469 100.0
CSS0048676 Camellia sinensis var. sinensis HOM05D004011 ORTHO05D005290 3.6e-213 745.0 463 77.1
Actinidia19850 Actinidia chinensis HOM05D004011 ORTHO05D005290 6.8e-212 740.7 465 76.6
Lsat_1_v5_gn_8_163421 Lactuca sativa HOM05D004011 ORTHO05D005290 1.9e-206 722.6 461 72.7
Duzib251G0283 Durio zibethinus HOM05D004011 ORTHO05D005290 1.2e-205 719.9 469 74.2
QL03p066429 Quercus lobata HOM05D004011 ORTHO05D005290 1.6e-205 719.5 468 74.4
Thecc.02G234800 Theobroma cacao HOM05D004011 ORTHO05D005290 1.2e-203 713.4 469 73.8
TAR622G0281 Trochodendron aralioides HOM05D004011 ORTHO05D005290 3.7e-202 708.4 464 73.3
CAN.G27.36 Capsicum annuum HOM05D004011 ORTHO05D005290 2.4e-201 705.7 469 73.1
HanXRQChr12g0371081 Helianthus annuus HOM05D004011 ORTHO05D005290 1.3e-199 699.9 462 72.3
CiPaw.05G142000 Carya illinoinensis HOM05D004011 ORTHO05D005290 1.7e-199 699.5 469 72.7
Nitab4.5_0000408g0060 Nicotiana tabacum HOM05D004011 ORTHO05D005290 2.3e-199 699.1 469 72.3
Gohir.D01G133600 Gossypium hirsutum HOM05D004011 ORTHO05D005290 3.0e-199 698.7 469 71.9
Prupe.1G265000 Prunus persica HOM05D004011 ORTHO05D005290 8.6e-199 697.2 463 73.2
RcHm_v2.0_Chr4g0445221 Rosa chinensis HOM05D004011 ORTHO05D005290 1.9e-198 696.0 463 71.9
Nitab4.5_0001726g0090 Nicotiana tabacum HOM05D004011 ORTHO05D005290 2.5e-198 695.7 469 72.3
GSVIVG01020097001 Vitis vinifera HOM05D004011 ORTHO05D005290 2.5e-198 695.7 465 72.3
Gorai.002G165100 Gossypium raimondii HOM05D004011 ORTHO05D005290 3.3e-198 695.3 473 71.5
Potri.010G035400 Populus trichocarpa HOM05D004011 ORTHO05D005290 3.3e-198 695.3 464 73.1
Eucgr.B03399 Eucalyptus grandis HOM05D004011 ORTHO05D005290 7.3e-198 694.1 465 70.8
Manes.01G192600 Manihot esculenta HOM05D004011 ORTHO05D005290 4.7e-197 691.4 463 71.9
TWI36G1736 Tripterygium wilfordii HOM05D004011 ORTHO05D005290 8.1e-197 690.6 463 70.0
Cc11_g13670 Coffea canephora HOM05D004011 ORTHO05D005290 2.3e-196 689.1 467 71.1
COL.COLO4_36215 Corchorus olitorius HOM05D004011 ORTHO05D005290 6.8e-196 687.6 465 71.4
MD16G1081000 Malus domestica HOM05D004011 ORTHO05D005290 2.0e-195 686.0 463 71.7
Sopen05g002700 Solanum pennellii HOM05D004011 ORTHO05D005290 3.4e-195 685.3 469 70.4
Solyc05g006760.4 Solanum lycopersicum HOM05D004011 ORTHO05D005290 4.4e-195 684.9 469 70.8
Cfa009061 Carpinus fangiana HOM05D004011 ORTHO05D005290 2.4e-193 679.1 469 71.9
Oeu028543.1 Olea europaea HOM05D004011 ORTHO05D005290 9.2e-193 677.2 463 71.5
Gohir.A01G142100 Gossypium hirsutum HOM05D004011 ORTHO05D005290 4.6e-192 674.9 440 73.0
Lalb_Chr09g0326751 Lupinus albus HOM05D004011 ORTHO05D005290 1.0e-191 673.7 465 69.2
Sabra10G0029400 Salix brachista HOM05D004011 ORTHO05D005290 2.3e-191 672.5 482 69.5
FAN07G2799 Fragaria x ananassa HOM05D004011 ORTHO05D005290 1.5e-190 669.8 465 69.7
FvH4_4g35610 Fragaria vesca HOM05D004011 ORTHO05D005290 2.5e-190 669.1 465 69.2
FAN22G2312 Fragaria x ananassa HOM05D004011 ORTHO05D005290 7.3e-190 667.5 465 69.0
FAN12G0945 Fragaria x ananassa HOM05D004011 ORTHO05D005290 9.5e-190 667.2 465 69.0
Cc11_g13690 Coffea canephora HOM05D004011 ORTHO05D005290 1.6e-189 666.4 441 72.1
Migut.L01360 Erythranthe guttata HOM05D004011 ORTHO05D005290 6.2e-189 664.5 469 68.7
CANSAT01G0183 Cannabis sativa HOM05D004011 ORTHO05D005290 8.1e-189 664.1 465 69.0
FAN17G1440 Fragaria x ananassa HOM05D004011 ORTHO05D005290 1.2e-187 660.2 462 69.3
Ca_04688_v3 Cicer arietinum L. HOM05D004011 ORTHO05D005290 2.2e-186 656.0 463 67.0
Ciclev10031073m.g Citrus clementina HOM05D004011 ORTHO05D005290 4.9e-186 654.8 450 70.0
ECA248G0235 Erigeron canadensis HOM05D004011 ORTHO05D005290 1.4e-185 653.3 454 68.9
Glyma.01G040300 Glycine max HOM05D004011 ORTHO05D005290 7.1e-185 651.0 463 66.5
PGSC0003DMG400022621 Solanum tuberosum HOM05D004011 ORTHO05D005290 2.7e-184 649.0 469 68.4
TPR.G26722 Trifolium pratense HOM05D004011 ORTHO05D005290 3.9e-183 645.2 465 67.3
Psat2g115960 Pisum sativum HOM05D004011 ORTHO05D005290 6.6e-183 644.4 465 67.1
Aqoxy3G03233 Aquilegia oxysepala HOM05D004011 ORTHO05D005290 3.3e-182 642.1 464 66.2
Medtr5g037400 Medicago truncatula HOM05D004011 ORTHO05D005290 9.6e-182 640.6 460 66.7
VMungo1215G2281 Vigna mungo HOM05D004011 ORTHO05D005290 1.2e-181 640.2 465 64.9
DCAR_031068 Daucus carota HOM05D004011 ORTHO05D005290 8.1e-181 637.5 437 71.4
Lj2g0011655 Lotus japonicus HOM05D004011 ORTHO05D005290 3.1e-180 635.6 463 65.0
CsaV3_5G032130 Cucumis sativus L. HOM05D004011 ORTHO05D005290 1.2e-179 633.6 470 64.7
ClCG05G024760 Citrullus lanatus HOM05D004011 ORTHO05D005290 3.4e-179 632.1 470 64.7
Phvul.002G080300 Phaseolus vulgaris HOM05D004011 ORTHO05D005290 3.4e-179 632.1 465 64.7
Peaxi162Scf00209g00842 Petunia axillaris HOM05D004011 ORTHO05D005290 3.8e-178 628.6 420 71.4
Atru.chr11.1880 Acer truncatum HOM05D004011 ORTHO05D005290 4.9e-178 628.2 417 72.9
arahy.Tifrunner.gnm1.ann1.XM7912 Arachis hypogaea HOM05D004011 ORTHO05D005290 4.9e-178 628.2 470 65.1
Glyma.02G024500 Glycine max HOM05D004011 ORTHO05D005290 1.9e-177 626.3 436 68.3
Sed0020834 Sechium edule HOM05D004011 ORTHO05D005290 4.2e-177 625.2 460 64.3
MELO3C012048.2 Cucumis melo HOM05D004011 ORTHO05D005290 3.5e-176 622.1 465 64.1
EL10Ac6g13125 Beta vulgaris HOM05D004011 ORTHO05D005290 7.8e-176 620.9 465 63.9
AUR62026479 Chenopodium quinoa HOM05D004011 ORTHO05D005290 3.0e-175 619.0 465 63.9
Carub.0001s2380 Capsella rubella HOM05D004011 ORTHO05D005290 1.5e-174 616.7 460 64.3
AL1G38330 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 4.0e-172 608.6 460 63.3
Hund05926 Selenicereus undatus HOM05D004011 ORTHO05D005290 5.3e-172 608.2 463 63.5
SalBow2G3145 Salvia bowleyana HOM05D004011 ORTHO05D005290 1.2e-171 607.1 463 65.2
Nn3g17098 Nelumbo nucifera HOM05D004011 ORTHO05D005290 9.9e-171 604.0 464 64.7
AT1G27150 Arabidopsis thaliana HOM05D004011 ORTHO05D005290 2.2e-170 602.8 460 62.8
THA.LOC104822935 Tarenaya hassleriana HOM05D004011 ORTHO05D005290 1.9e-169 599.7 464 62.1
Thhalv10007555m.g Eutrema salsugineum HOM05D004011 ORTHO05D005290 3.2e-169 599.0 460 62.8
BcaB03g14114 Brassica carinata HOM05D004011 ORTHO05D005290 1.0e-167 594.0 462 62.8
BraA08t34710Z Brassica rapa HOM05D004011 ORTHO05D005290 1.8e-167 593.2 460 60.4
THA.LOC104822089 Tarenaya hassleriana HOM05D004011 ORTHO05D005290 1.8e-167 593.2 461 62.5
unitig_22.g6920 Utricularia gibba HOM05D004011 ORTHO05D005290 2.3e-167 592.8 463 62.4
A07p13510 Brassica napus HOM05D004011 ORTHO05D005290 3.0e-167 592.4 462 62.6
CDE06G1386 Ceratophyllum demersum HOM05D004011 ORTHO05D005290 1.1e-166 590.5 464 61.0
BraA09t39549Z Brassica rapa HOM05D004011 ORTHO05D005290 2.5e-166 589.3 461 61.0
BcaC05g26340 Brassica carinata HOM05D004011 ORTHO05D005290 4.3e-166 588.6 461 61.2
BcaC06g35087 Brassica carinata HOM05D004011 ORTHO05D005290 9.6e-166 587.4 462 61.5
A07p13370 Brassica napus HOM05D004011 ORTHO05D005290 1.6e-165 586.6 462 61.7
Sp1g21670 Schrenkiella parvula HOM05D004011 ORTHO05D005290 1.6e-165 586.6 460 60.7
BolC8t49891H Brassica oleracea HOM05D004011 ORTHO05D005290 2.1e-165 586.3 460 60.2
A09p40530 Brassica napus HOM05D004011 ORTHO05D005290 6.2e-165 584.7 461 61.0
C07p20000 Brassica napus HOM05D004011 ORTHO05D005290 1.4e-164 583.6 462 61.0
BolC7t42519H Brassica oleracea HOM05D004011 ORTHO05D005290 1.4e-164 583.6 462 61.0
Sp1g21620 Schrenkiella parvula HOM05D004011 ORTHO05D005290 1.4e-164 583.6 461 61.4
BcaC07g39250 Brassica carinata HOM05D004011 ORTHO05D005290 1.8e-164 583.2 460 59.8
BraA07t29109Z Brassica rapa HOM05D004011 ORTHO05D005290 4.0e-164 582.0 464 61.4
BcaB03g11978 Brassica carinata HOM05D004011 ORTHO05D005290 5.3e-164 581.6 467 59.7
CARHR024790 Cardamine hirsuta HOM05D004011 ORTHO05D005290 7.6e-163 577.8 468 60.0
Aa31LG7G8050 Aethionema arabicum HOM05D004011 ORTHO05D005290 2.2e-162 576.2 460 61.1
Haze_12040 Corylus avellana HOM05D004011 ORTHO05D005290 5.5e-161 571.6 491 62.1
CARHR024720 Cardamine hirsuta HOM05D004011 ORTHO05D005290 7.1e-161 571.2 460 61.5
Os03g0689900 Oryza sativa ssp. japonica HOM05D004011 ORTHO05D005290 3.9e-159 565.5 466 56.9
ATR0001G025 Amborella trichopoda HOM05D004011 ORTHO05D005290 9.6e-158 560.8 435 61.8
vmacro01220 Vaccinium macrocarpon HOM05D004011 ORTHO05D005290 8.2e-157 557.8 336 78.9
BcaB07g32390 Brassica carinata HOM05D004011 ORTHO05D005290 1.4e-156 557.0 464 59.5
C08p22550 Brassica napus HOM05D004011 ORTHO05D005290 4.0e-156 555.4 435 60.2
A08p27740 Brassica napus HOM05D004011 ORTHO05D005290 1.5e-155 553.5 431 60.3
AT1G27110 Arabidopsis thaliana HOM05D004011 ORTHO05D005290 1.0e-154 550.8 460 59.8
arahy.Tifrunner.gnm1.ann1.DHW1RD Arachis hypogaea HOM05D004011 ORTHO05D005290 2.5e-153 546.2 467 57.8
BcaB03g14111 Brassica carinata HOM05D004011 ORTHO05D005290 2.5e-153 546.2 485 57.3
PSO782G5642 Papaver somniferum HOM05D004011 ORTHO05D005290 2.5e-153 546.2 463 57.0
Carub.0001s2386 Capsella rubella HOM05D004011 ORTHO05D005290 3.2e-153 545.8 438 59.1
MBI01_g01221_MAGBIO Magnolia biondii HOM05D004011 ORTHO05D005290 2.7e-152 542.7 426 63.1
C05p23640 Brassica napus HOM05D004011 ORTHO05D005290 6.9e-148 528.1 433 58.9
PSO423G0236 Papaver somniferum HOM05D004011 ORTHO05D005290 2.0e-147 526.6 461 56.4
Zm00001eb053520 Zea mays HOM05D004011 ORTHO05D005290 2.0e-147 526.6 455 54.5
arahy.Tifrunner.gnm1.ann1.SQ07EG Arachis hypogaea HOM05D004011 ORTHO05D005290 1.3e-146 523.9 489 55.4
BolC5t31078H Brassica oleracea HOM05D004011 ORTHO05D005290 3.8e-146 522.3 461 56.4
Hma1.2p1_1045F.1_g251340 Hydrangea macrophylla HOM05D004011 ORTHO05D005290 1.4e-143 513.8 435 60.0
Cpa.g.sc5.292 Carica papaya HOM05D004011 ORTHO05D005290 1.8e-143 513.5 463 59.6
BcaC07g37560 Brassica carinata HOM05D004011 ORTHO05D005290 3.3e-142 509.2 446 56.7
SGA_v2.0_scaffold166G38295 Striga asiatica HOM05D004011 ORTHO05D005290 6.3e-141 505.0 508 53.5
BolC8t47901H Brassica oleracea HOM05D004011 ORTHO05D005290 1.8e-140 503.4 461 56.2
Sc11g0001560 Simmondsia chinensis HOM05D004011 ORTHO05D005290 2.5e-137 493.0 360 64.7
BolC5t31073H Brassica oleracea HOM05D004011 ORTHO05D005290 1.8e-135 486.9 388 59.5
Thhalv10007979m.g Eutrema salsugineum HOM05D004011 ORTHO05D005290 4.1e-132 475.7 365 60.5
A08p08630 Brassica napus HOM05D004011 ORTHO05D005290 3.1e-124 449.5 447 53.2
AUR62026286 Chenopodium quinoa HOM05D004011 ORTHO05D005290 1.2e-120 437.6 499 47.3
Pp3c17_17430 Physcomitrium patens HOM05D004011 ORTHO05D005290 3.0e-103 379.8 470 44.3
SMO331G0048 Selaginella moellendorffii HOM05D004011 ORTHO05D005290 9.8e-86 321.6 407 43.0
Atru.chr9.2355 Acer truncatum HOM05D004011 ORTHO05D005290 1.7e-85 320.9 242 68.2
Mapoly0042s0014 Marchantia polymorpha HOM05D004011 ORTHO05D005290 3.2e-84 316.6 432 40.3
Actinidia08204 Actinidia chinensis HOM05D004011 ORTHO05D005290 3.1e-79 300.1 202 71.8
Actinidia08203 Actinidia chinensis HOM05D004011 ORTHO05D005290 2.2e-77 293.9 196 70.9
arahy.Tifrunner.gnm1.ann1.NNWV08 Arachis hypogaea HOM05D004011 ORTHO05D005290 1.4e-76 291.2 262 54.2
Atru.chr5.3340 Acer truncatum HOM05D004011 ORTHO05D005290 1.0e-74 285.0 200 72.5
Atru.chr1.621 Acer truncatum HOM05D004011 ORTHO05D005290 1.7e-74 284.3 200 72.5
BraA08t32877Z Brassica rapa HOM05D004011 ORTHO05D005290 2.0e-62 244.2 226 54.0
Medtr5g037420 Medicago truncatula HOM05D004011 ORTHO05D005290 1.5e-54 218.0 145 66.2
BolC7t42515H Brassica oleracea HOM05D004011 ORTHO05D005290 7.6e-54 215.7 222 52.7
A07p13340 Brassica napus HOM05D004011 ORTHO05D005290 2.7e-51 207.2 377 37.4
C07p19960 Brassica napus HOM05D004011 ORTHO05D005290 3.5e-51 206.8 219 51.6
C05p23600 Brassica napus HOM05D004011 ORTHO05D005290 2.0e-46 191.0 317 37.9
Atru.chr10.818 Acer truncatum HOM05D004011 ORTHO05D005290 3.4e-38 163.7 273 37.0
TPR.G21863 Trifolium pratense HOM05D004011 ORTHO05D005290 3.4e-38 163.7 110 66.4
BcaC06g35090 Brassica carinata HOM05D004011 ORTHO05D005290 1.9e-36 157.9 179 49.7
AL1G38380 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 3.1e-31 140.6 117 58.1
TAR636G0334 Trochodendron aralioides HOM05D004011 ORTHO05D005290 1.5e-30 138.3 176 45.5
AL1G38370 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 4.5e-30 136.7 109 66.1
BcaC06g35091 Brassica carinata HOM05D004011 ORTHO05D005290 3.2e-28 130.6 214 37.4
Atru.chr2.3843 Acer truncatum HOM05D004011 ORTHO05D005290 4.2e-28 130.2 193 37.8
Cfa021096 Carpinus fangiana HOM05D004011 ORTHO05D000073 3.9e-26 123.6 93 72.0
BraA07t29105Z Brassica rapa HOM05D004011 ORTHO05D005290 8.8e-26 122.5 132 47.0
BolC5t31071H Brassica oleracea HOM05D004011 ORTHO05D005290 2.0e-25 121.3 145 47.6
BolC5t31081H Brassica oleracea HOM05D004011 ORTHO05D005290 1.3e-24 118.6 145 46.2
BolC7t42514H Brassica oleracea HOM05D004011 ORTHO05D005290 2.2e-24 117.9 214 36.9
Duzib268G0988 Durio zibethinus HOM05D004011 ORTHO05D005290 4.8e-24 116.7 93 61.3
Cc11_g13680 Coffea canephora HOM05D004011 ORTHO05D005290 4.5e-22 110.2 79 67.1
BolC5t31079H Brassica oleracea HOM05D004011 ORTHO05D005290 7.7e-22 109.4 77 61.0
BolC5t31070H Brassica oleracea HOM05D004011 ORTHO05D005290 1.7e-21 108.2 77 61.0
BolC7t42512H Brassica oleracea HOM05D004011 ORTHO05D005290 1.9e-20 104.8 106 48.1
BcaB04g18716 Brassica carinata HOM05D000040 ORTHO05D005442 2.7e-19 100.9 83 62.7
C07p19930 Brassica napus HOM05D004011 ORTHO05D005290 3.6e-19 100.5 95 50.5
BolC5t31074H Brassica oleracea HOM05D004011 ORTHO05D005290 1.0e-18 99.0 74 58.1
C07p19950 Brassica napus HOM05D004011 ORTHO05D005290 2.3e-18 97.8 218 34.9
BcaB07g32391 Brassica carinata HOM05D026641 ORTHO05D027156 7.4e-17 92.8 98 46.9
RcHm_v2.0_Chr7g0206221 Rosa chinensis HOM05D004011 ORTHO05D005290 1.3e-16 92.0 54 64.8
Atru.chr1.3881 Acer truncatum HOM05D004011 ORTHO05D023183 2.8e-16 90.9 56 71.4
SEGI_16255 Sequoiadendron giganteum HOM05D004011 ORTHO05D005290 2.4e-15 87.8 113 43.4
AL2G16820 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 2.2e-13 81.3 56 60.7
SMO252G0024 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 1.9e-12 78.2 177 28.8
SMO203G0050 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 4.2e-12 77.0 177 28.2
A07p13320 Brassica napus HOM05D004011 ORTHO05D005290 5.5e-12 76.6 64 54.7
SMO110G0005 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 6.1e-11 73.2 177 28.2
A07p13600 Brassica napus HOM05D004011 ORTHO05D100703 1.0e-10 72.4 64 50.0
CAN.G1697.3 Capsicum annuum HOM05D013442 ORTHO05D016868 5.2e-10 70.1 68 48.5
BraA07t29103Z Brassica rapa HOM05D001102 ORTHO05D021602 2.8e-08 64.3 71 45.1
Nitab4.5_0002852g0030 Nicotiana tabacum HOM05D001347 ORTHO05D001198 4.1e-07 60.5 49 57.1
SMO331G0064 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 7.0e-07 59.7 83 38.6
SMO331G0031 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 1.2e-06 58.9 68 42.6
SMO331G0015 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 1.6e-06 58.5 83 38.6
C05p23630 Brassica napus HOM05D004011 ORTHO05D033156 2.0e-06 58.2 42 66.7


User provided reference genes

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