Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3C1038T15 Lonicera japonica HOM05D004366 ORTHO05D005058 1.2e-109 399.8 203 100.0
Manes.01G186800 Manihot esculenta HOM05D004366 ORTHO05D005058 2.4e-89 332.4 203 81.8
Actinidia31203 Actinidia chinensis HOM05D004366 ORTHO05D005058 2.7e-88 328.9 203 78.8
Rhsim12G0062000 Rhododendron simsii HOM05D004366 ORTHO05D005058 4.6e-88 328.2 201 79.6
Peaxi162Scf00026g03112 Petunia axillaris HOM05D004366 ORTHO05D005058 5.9e-88 327.8 203 80.3
Atru.chr11.1817 Acer truncatum HOM05D004366 ORTHO05D005058 7.8e-88 327.4 202 79.2
Nitab4.5_0000141g0240 Nicotiana tabacum HOM05D004366 ORTHO05D005058 7.8e-88 327.4 201 80.1
TWI12G0004 Tripterygium wilfordii HOM05D004366 ORTHO05D005058 1.7e-87 326.2 203 79.3
CSS0003416 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 1.5e-86 323.2 202 77.2
CSS0021388 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 4.3e-86 321.6 202 77.2
SalBow2G0488 Salvia bowleyana HOM05D004366 ORTHO05D005058 5.6e-86 321.2 203 77.8
Sopen01g006640 Solanum pennellii HOM05D004366 ORTHO05D005058 2.1e-85 319.3 202 78.2
Solyc01g010810.4 Solanum lycopersicum HOM05D004366 ORTHO05D005058 3.6e-85 318.5 202 77.7
Cc11_g13140 Coffea canephora HOM05D004366 ORTHO05D005058 1.0e-84 317.0 203 76.8
Ciclev10032771m.g Citrus clementina HOM05D004366 ORTHO05D005058 1.8e-84 316.2 202 76.2
Cpa.g.sc128.8 Carica papaya HOM05D004366 ORTHO05D005058 2.3e-84 315.8 200 78.0
Prupe.1G272700 Prunus persica HOM05D004366 ORTHO05D005058 2.3e-84 315.8 203 77.8
Sc11g0001840 Simmondsia chinensis HOM05D004366 ORTHO05D005058 2.3e-84 315.8 202 76.2
Eucgr.B03429 Eucalyptus grandis HOM05D004366 ORTHO05D005058 2.0e-83 312.8 203 76.8
CAN.G473.145 Capsicum annuum HOM05D004366 ORTHO05D005058 3.4e-83 312.0 202 77.7
PGSC0003DMG400006558 Solanum tuberosum HOM05D004366 ORTHO05D005058 3.4e-83 312.0 202 76.7
Thecc.02G350500 Theobroma cacao HOM05D004366 ORTHO05D005058 1.3e-82 310.1 198 75.3
MD13G1073400 Malus domestica HOM05D004366 ORTHO05D005058 2.2e-82 309.3 203 75.4
Migut.L01306 Erythranthe guttata HOM05D004366 ORTHO05D005058 2.9e-82 308.9 202 76.2
SGA_v2.0_scaffold20G09275 Striga asiatica HOM05D004366 ORTHO05D005058 3.7e-82 308.5 203 75.9
CiPaw.06G083500 Carya illinoinensis HOM05D004366 ORTHO05D005058 4.9e-82 308.1 203 74.4
Gohir.D13G074000 Gossypium hirsutum HOM05D004366 ORTHO05D005058 1.1e-81 307.0 203 73.4
COL.COLO4_22987 Corchorus olitorius HOM05D004366 ORTHO05D005058 1.4e-81 306.6 198 76.3
QL03p064520 Quercus lobata HOM05D004366 ORTHO05D005058 1.4e-81 306.6 201 76.1
Gorai.013G084600 Gossypium raimondii HOM05D004366 ORTHO05D005058 1.9e-81 306.2 203 73.4
CSS0022805 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 3.2e-81 305.4 203 75.4
MELO3C012087.2 Cucumis melo HOM05D004366 ORTHO05D005058 4.1e-81 305.1 203 75.9
Aqoxy3G03355 Aquilegia oxysepala HOM05D004366 ORTHO05D005058 5.4e-81 304.7 192 76.0
ClCG05G024360 Citrullus lanatus HOM05D004366 ORTHO05D005058 5.4e-81 304.7 203 74.9
Gohir.A13G073900 Gossypium hirsutum HOM05D004366 ORTHO05D005058 5.4e-81 304.7 203 72.9
Sed0027317 Sechium edule HOM05D004366 ORTHO05D005058 7.0e-81 304.3 203 74.4
Hund05888 Selenicereus undatus HOM05D004366 ORTHO05D005058 9.2e-81 303.9 198 75.3
CsaV3_5G032600 Cucumis sativus L. HOM05D004366 ORTHO05D005058 1.6e-80 303.1 203 75.9
FvH4_4g31510 Fragaria vesca HOM05D004366 ORTHO05D005058 2.7e-80 302.4 200 74.0
FAN12G0862 Fragaria x ananassa HOM05D004366 ORTHO05D005058 6.0e-80 301.2 200 73.5
MD16G1074700 Malus domestica HOM05D004366 ORTHO05D005058 7.8e-80 300.8 203 74.4
Glyma.01G045700 Glycine max HOM05D004366 ORTHO05D005058 1.0e-79 300.4 198 75.3
AT1G69680 Arabidopsis thaliana HOM05D004366 ORTHO05D005058 1.7e-79 299.7 195 74.9
Nitab4.5_0005950g0010 Nicotiana tabacum HOM05D004366 ORTHO05D005058 1.7e-79 299.7 203 74.9
Phvul.002G086500 Phaseolus vulgaris HOM05D004366 ORTHO05D005058 1.7e-79 299.7 198 75.3
Oeu028302.2 Olea europaea HOM05D004366 ORTHO05D005058 2.3e-79 299.3 204 74.5
EL10Ac6g13190 Beta vulgaris HOM05D004366 ORTHO05D005058 3.9e-79 298.5 200 73.5
Medtr5g039690 Medicago truncatula HOM05D004366 ORTHO05D005058 3.9e-79 298.5 201 73.1
Glyma.02G106000 Glycine max HOM05D004366 ORTHO05D005058 5.0e-79 298.1 198 74.2
Carub.0002s1634 Capsella rubella HOM05D004366 ORTHO05D005058 8.6e-79 297.4 195 74.9
HanXRQChr08g0210471 Helianthus annuus HOM05D004366 ORTHO05D005058 8.6e-79 297.4 199 74.4
RcHm_v2.0_Chr4g0440001 Rosa chinensis HOM05D004366 ORTHO05D005058 1.1e-78 297.0 200 73.0
Aa31LG4G11100 Aethionema arabicum HOM05D004366 ORTHO05D005058 1.5e-78 296.6 197 74.1
Ca_04775_v3 Cicer arietinum L. HOM05D004366 ORTHO05D005058 1.5e-78 296.6 198 74.2
Medtr8g463620 Medicago truncatula HOM05D004366 ORTHO05D005058 1.5e-78 296.6 201 72.1
TWI53G1314 Tripterygium wilfordii HOM05D004366 ORTHO05D005058 1.9e-78 296.2 202 73.8
FAN17G2550 Fragaria x ananassa HOM05D004366 ORTHO05D005058 2.5e-78 295.8 200 72.5
Psat0s2341g0040 Pisum sativum HOM05D004366 ORTHO05D005058 3.3e-78 295.4 198 73.7
Lj2g0005379 Lotus japonicus HOM05D004366 ORTHO05D005058 4.3e-78 295.0 199 75.4
AL2G28850 Arabidopsis lyrata HOM05D004366 ORTHO05D005058 5.6e-78 294.7 195 74.9
BcaC08g46415 Brassica carinata HOM05D004366 ORTHO05D005058 5.6e-78 294.7 196 73.5
BolC6t39421H Brassica oleracea HOM05D004366 ORTHO05D005058 5.6e-78 294.7 196 73.5
Thhalv10019150m.g Eutrema salsugineum HOM05D004366 ORTHO05D005058 5.6e-78 294.7 195 72.8
A07p31430 Brassica napus HOM05D004366 ORTHO05D005058 7.3e-78 294.3 196 73.5
BraA07t30778Z Brassica rapa HOM05D004366 ORTHO05D005058 7.3e-78 294.3 196 73.5
Nn4g23131 Nelumbo nucifera HOM05D004366 ORTHO05D005058 7.3e-78 294.3 203 74.4
PSO339G1196 Papaver somniferum HOM05D004366 ORTHO05D005058 9.5e-78 293.9 200 71.5
A07p36060 Brassica napus HOM05D004366 ORTHO05D005058 1.2e-77 293.5 196 74.0
BraA07t31186Z Brassica rapa HOM05D004366 ORTHO05D005058 1.2e-77 293.5 196 74.0
MBI02_g23682_MAGBIO Magnolia biondii HOM05D004366 ORTHO05D005058 1.2e-77 293.5 203 71.9
PSO384G0235 Papaver somniferum HOM05D004366 ORTHO05D005058 1.2e-77 293.5 200 72.0
THA.LOC104822115 Tarenaya hassleriana HOM05D004366 ORTHO05D005058 1.2e-77 293.5 202 72.3
CARHR062670 Cardamine hirsuta HOM05D004366 ORTHO05D005058 1.6e-77 293.1 195 73.3
C06p43460 Brassica napus HOM05D004366 ORTHO05D005058 2.1e-77 292.7 196 73.0
Lsat_1_v5_gn_8_52741 Lactuca sativa HOM05D004366 ORTHO05D005058 2.8e-77 292.4 199 71.9
Lalb_Chr04g0256161 Lupinus albus HOM05D004366 ORTHO05D005058 2.8e-77 292.4 198 72.7
Sp5g24810 Schrenkiella parvula HOM05D004366 ORTHO05D005058 2.8e-77 292.4 196 72.4
C06p36720 Brassica napus HOM05D004366 ORTHO05D005058 3.6e-77 292.0 196 73.0
BcaB03g14744 Brassica carinata HOM05D004366 ORTHO05D005058 4.7e-77 291.6 196 72.4
BolC6t38782H Brassica oleracea HOM05D004366 ORTHO05D005058 6.2e-77 291.2 196 72.4
HanXRQChr12g0362541 Helianthus annuus HOM05D004366 ORTHO05D005058 8.1e-77 290.8 197 74.1
FAN15G0746 Fragaria x ananassa HOM05D004366 ORTHO05D005058 2.3e-76 289.3 200 71.5
Sabra13G0046200 Salix brachista HOM05D004366 ORTHO05D005058 5.2e-76 288.1 200 70.5
ECA233G4070 Erigeron canadensis HOM05D004366 ORTHO05D005058 1.2e-75 287.0 195 73.8
FAN24G0452 Fragaria x ananassa HOM05D004366 ORTHO05D005058 2.6e-75 285.8 200 69.5
FAN27G2895 Fragaria x ananassa HOM05D004366 ORTHO05D005058 5.8e-75 284.6 201 71.1
Haze_12025 Corylus avellana HOM05D004366 ORTHO05D005058 1.7e-74 283.1 203 70.9
PSO675G4203 Papaver somniferum HOM05D004366 ORTHO05D005058 1.7e-74 283.1 200 70.0
arahy.Tifrunner.gnm1.ann1.5V6A51 Arachis hypogaea HOM05D004366 ORTHO05D005058 3.7e-74 282.0 213 67.6
Sp3g28750 Schrenkiella parvula HOM05D004366 ORTHO05D005058 3.7e-74 282.0 206 67.0
BcaB03g15490 Brassica carinata HOM05D004366 ORTHO05D005058 4.9e-74 281.6 197 70.6
Hma1.2p1_0598F.1_g186660 Hydrangea macrophylla HOM05D004366 ORTHO05D005058 1.4e-73 280.0 333 50.2
AUR62026617 Chenopodium quinoa HOM05D004366 ORTHO05D005058 3.2e-73 278.9 200 70.5
ATR0564G205 Amborella trichopoda HOM05D004366 ORTHO05D005058 4.1e-73 278.5 198 70.7
FvH4_2g13310 Fragaria vesca HOM05D004366 ORTHO05D005058 5.4e-73 278.1 201 68.7
PGR102G1003 Punica granatum HOM05D004366 ORTHO05D005058 1.6e-72 276.6 198 70.7
unitig_22.g6909 Utricularia gibba HOM05D004366 ORTHO05D005058 7.8e-72 274.2 203 69.0
CANSAT25G1390 Cannabis sativa HOM05D004366 ORTHO05D005058 3.3e-70 268.9 200 68.5
CANSAT54G1616 Cannabis sativa HOM05D004366 ORTHO05D005058 5.6e-70 268.1 200 68.5
AUR62005764 Chenopodium quinoa HOM05D004366 ORTHO05D005058 7.3e-70 267.7 182 73.1
AUR62034912 Chenopodium quinoa HOM05D004366 ORTHO05D005058 1.2e-69 266.9 181 72.4
VMungo1215G0984 Vigna mungo HOM05D004366 ORTHO05D005058 1.2e-69 266.9 175 76.6
Oeu013622.3 Olea europaea HOM05D004366 ORTHO05D005058 8.1e-69 264.2 202 68.3
Aa31sc15G10 Aethionema arabicum HOM05D004366 ORTHO05D005058 1.8e-68 263.1 179 73.7
BcaC08g45875 Brassica carinata HOM05D004366 ORTHO05D005058 3.1e-68 262.3 199 67.8
Os04g0459600 Oryza sativa ssp. japonica HOM05D004366 ORTHO05D005058 5.2e-68 261.5 195 66.7
Potri.013G049900 Populus trichocarpa HOM05D004366 ORTHO05D005058 8.9e-68 260.8 181 70.7
GSVIVG01020010001 Vitis vinifera HOM05D004366 ORTHO05D005058 1.2e-67 260.4 168 78.6
AL7G43580 Arabidopsis lyrata HOM05D004366 ORTHO05D005058 5.8e-67 258.1 176 72.7
arahy.Tifrunner.gnm1.ann1.QXP3RB Arachis hypogaea HOM05D004366 ORTHO05D005058 9.9e-67 257.3 178 71.3
Duzib248G1524 Durio zibethinus HOM05D004366 ORTHO05D005058 9.9e-67 257.3 203 65.0
AUR62028793 Chenopodium quinoa HOM05D004366 ORTHO05D005058 4.9e-66 255.0 200 66.0
Zm00001eb080830 Zea mays HOM05D004366 ORTHO05D005058 1.9e-65 253.1 190 66.8
SEGI_03925 Sequoiadendron giganteum HOM05D004366 ORTHO05D005058 2.4e-65 252.7 200 59.5
Ah.03g135200 Amaranthus hybridus HOM05D004366 ORTHO05D005058 1.2e-64 250.4 198 64.6
vmacro01244 Vaccinium macrocarpon HOM05D004366 ORTHO05D005058 7.8e-64 247.7 257 54.1
SGA_v2.0_scaffold53G19387 Striga asiatica HOM05D004366 ORTHO05D005058 2.3e-63 246.1 242 57.9
HPP92_006020 Vanilla planifolia HOM05D004366 ORTHO05D005058 2.5e-62 242.7 185 63.2
Aa31LG9G5650 Aethionema arabicum HOM05D004366 ORTHO05D005058 8.1e-61 237.7 215 59.1
FAN22G2022 Fragaria x ananassa HOM05D004366 ORTHO05D005058 7.1e-57 224.6 235 53.6
TPR.G39101 Trifolium pratense HOM05D004366 ORTHO05D005058 7.8e-56 221.1 167 67.7
Cfa008996 Carpinus fangiana HOM05D004366 ORTHO05D005058 1.5e-54 216.9 222 54.1
AagrBONN_evm.TU.Sc2ySwM_344.5131 Anthoceros agrestis HOM05D004366 ORTHO05D005058 5.6e-54 214.9 190 56.3
Pp3c9_14930 Physcomitrium patens HOM05D004366 ORTHO05D005058 2.4e-52 209.5 199 52.8
vmacro01242 Vaccinium macrocarpon HOM05D004366 ORTHO05D005058 9.9e-51 204.1 230 51.3
DCAR_027406 Daucus carota HOM05D002775 ORTHO05D005058 5.4e-49 198.4 128 78.1
Dinv16634 Davidia involucrata HOM05D004366 ORTHO05D005058 5.1e-47 191.8 112 79.5
SMO147G0050 Selaginella moellendorffii HOM05D004366 ORTHO05D005058 1.7e-42 176.8 195 47.2
CBR_g17957 Chara braunii HOM05D004366 ORTHO05D005058 1.1e-41 174.1 202 46.5
SalBow2G3183 Salvia bowleyana HOM05D004366 ORTHO05D005058 1.1e-41 174.1 115 77.4
TAR629G2773 Trochodendron aralioides HOM05D004366 ORTHO05D005058 1.4e-41 173.7 112 72.3
AagrBONN_evm.TU.Sc2ySwM_362.1786 Anthoceros agrestis HOM05D004366 ORTHO05D005058 9.3e-41 171.0 177 49.7
arahy.Tifrunner.gnm1.ann1.4LW61L Arachis hypogaea HOM05D004366 ORTHO05D005058 1.6e-40 170.2 120 70.0
Pp3c15_14240 Physcomitrium patens HOM05D004366 ORTHO05D005058 2.2e-34 149.8 144 52.8
Mapoly0113s0045 Marchantia polymorpha HOM05D004366 ORTHO05D005058 3.8e-34 149.1 219 40.6
MD11G1061500 Malus domestica HOM05D004366 ORTHO05D005058 2.5e-33 146.4 112 63.4
Potri.019G023800 Populus trichocarpa HOM05D004366 ORTHO05D005058 2.5e-33 146.4 89 74.2
MSTRG.695 Avicennia marina HOM05D004366 ORTHO05D005058 3.5e-32 142.5 85 80.0
CSS0000370 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 1.9e-30 136.7 82 76.8
CSS0042124 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 5.7e-30 135.2 82 74.4
Lj6A789T49 Lonicera japonica HOM05D004366 ORTHO05D005058 2.8e-29 132.9 90 74.4
MCO13G325 Micromonas commoda HOM05D004366 ORTHO05D005058 5.3e-28 128.6 210 40.5
arahy.Tifrunner.gnm1.ann1.MY0RSE Arachis hypogaea HOM05D004366 ORTHO05D005058 1.5e-27 127.1 103 63.1
arahy.Tifrunner.gnm1.ann1.J913Y5 Arachis hypogaea HOM05D004366 ORTHO05D005058 4.5e-27 125.6 84 69.0
arahy.Tifrunner.gnm1.ann1.D4KK35 Arachis hypogaea HOM05D004366 ORTHO05D005058 4.6e-24 115.5 127 52.0
Rhsim11G0057700 Rhododendron simsii HOM05D004366 ORTHO05D005058 4.6e-24 115.5 73 78.1
CAN.G154.11 Capsicum annuum HOM05D004366 ORTHO05D005058 1.8e-23 113.6 130 49.2
PGSC0003DMG400015729 Solanum tuberosum HOM05D004366 ORTHO05D005058 8.7e-23 111.3 102 59.8
FAN07G2952 Fragaria x ananassa HOM05D004366 ORTHO05D005058 2.2e-21 106.7 72 69.4
arahy.Tifrunner.gnm1.ann1.8CQ436 Arachis hypogaea HOM05D004366 ORTHO05D005058 2.6e-19 99.8 68 72.1
arahy.Tifrunner.gnm1.ann1.N9R1JE Arachis hypogaea HOM05D004366 ORTHO05D005058 3.4e-19 99.4 77 64.9
BcaC07g37109 Brassica carinata HOM05D004366 ORTHO05D005058 6.5e-18 95.1 80 58.8
C08p04780 Brassica napus HOM05D004366 ORTHO05D005058 5.5e-17 92.0 72 62.5
Lsat_1_v5_gn_1_103541 Lactuca sativa HOM05D004366 ORTHO05D005058 1.2e-16 90.9 103 49.5
PRCOL_00002884 Prasinoderma coloniale HOM05D004366 ORTHO05D005058 1.2e-16 90.9 201 30.3
BolC8t47277H Brassica oleracea HOM05D004366 ORTHO05D005058 1.0e-15 87.8 77 59.7
Cre05.g244850 Chlamydomonas reinhardtii HOM05D004366 ORTHO05D005058 3.0e-15 86.3 193 29.5
arahy.Tifrunner.gnm1.ann1.NKT7G2 Arachis hypogaea HOM05D004366 ORTHO05D005058 1.3e-13 80.9 117 43.6
SalBow1G5797 Salvia bowleyana HOM05D004366 ORTHO05D005058 1.4e-12 77.4 45 77.8
CANSAT54G0841 Cannabis sativa HOM05D001400 ORTHO05D001795 1.0e-10 71.2 49 63.3
PSO339G3282 Papaver somniferum HOM05D000073 ORTHO05D000033 5.0e-10 68.9 53 66.0
AUR62028525 Chenopodium quinoa HOM05D004366 ORTHO05D000022 1.6e-08 63.9 45 64.4
A08p04480 Brassica napus HOM05D004366 ORTHO05D005058 8.8e-07 58.2 72 40.3
TAR624G1239 Trochodendron aralioides HOM05D049658 ORTHO05D051498 8.8e-07 58.2 39 74.4
BraA08t32473Z Brassica rapa HOM05D004366 ORTHO05D005058 3.3e-06 56.2 42 57.1
TAR626G1697 Trochodendron aralioides HOM05D049658 ORTHO05D051498 7.4e-06 55.1 40 72.5


User provided reference genes

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