Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3C1030G23 Lonicera japonica HOM05D001391 ORTHO05D005432 3.5e-187 658.3 366 100.0
CSS0007431 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 8.6e-162 573.9 337 86.9
CSS0028231 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 8.6e-162 573.9 337 86.9
CiPaw.06G092300 Carya illinoinensis HOM05D001391 ORTHO05D005432 8.0e-160 567.4 330 86.7
DCAR_007192 Daucus carota HOM05D001391 ORTHO05D005432 2.3e-159 565.8 340 85.6
SGA_v2.0_scaffold16G07780 Striga asiatica HOM05D001391 ORTHO05D005432 2.6e-158 562.4 328 85.7
Sopen05g007170 Solanum pennellii HOM05D001391 ORTHO05D005432 5.8e-158 561.2 328 85.4
GSVIVG01012214001 Vitis vinifera HOM05D001391 ORTHO05D005432 9.8e-158 560.5 337 84.0
Oeu048144.1 Olea europaea HOM05D001391 ORTHO05D005432 3.2e-156 555.4 317 87.4
Dinv34072 Davidia involucrata HOM05D001391 ORTHO05D005432 1.6e-155 553.1 330 84.8
QL03p071791 Quercus lobata HOM05D001391 ORTHO05D005432 2.0e-155 552.7 335 82.1
ECA246G4329 Erigeron canadensis HOM05D001391 ORTHO05D005432 3.5e-155 552.0 339 81.7
Actinidia16169 Actinidia chinensis HOM05D001391 ORTHO05D005432 4.6e-155 551.6 322 86.6
HanXRQChr15g0477081 Helianthus annuus HOM05D001391 ORTHO05D005432 6.0e-155 551.2 339 81.1
QL03p072323 Quercus lobata HOM05D001391 ORTHO05D005432 6.0e-155 551.2 329 82.7
Cc11_g12040 Coffea canephora HOM05D001391 ORTHO05D005432 1.3e-154 550.1 336 83.0
QL03p071836 Quercus lobata HOM05D001391 ORTHO05D005432 2.3e-154 549.3 329 82.7
Manes.01G028100 Manihot esculenta HOM05D001391 ORTHO05D005432 1.5e-153 546.6 340 80.3
CAN.G616.39 Capsicum annuum HOM05D001391 ORTHO05D005432 2.5e-153 545.8 332 82.8
Sabra10G0120500 Salix brachista HOM05D001391 ORTHO05D005432 4.3e-153 545.0 334 82.3
Potri.010G158700 Populus trichocarpa HOM05D001391 ORTHO05D005432 5.6e-153 544.7 330 82.4
Ciclev10031905m.g Citrus clementina HOM05D001391 ORTHO05D005432 2.8e-152 542.3 330 80.6
TAR629G1471 Trochodendron aralioides HOM05D001391 ORTHO05D005432 2.8e-152 542.3 337 80.1
TAR629G2660 Trochodendron aralioides HOM05D001391 ORTHO05D005432 2.8e-152 542.3 337 80.1
QL03p072348 Quercus lobata HOM05D001391 ORTHO05D005432 3.6e-152 542.0 336 80.4
HanXRQChr12g0375271 Helianthus annuus HOM05D001391 ORTHO05D005432 6.2e-152 541.2 339 80.2
QL03p071994 Quercus lobata HOM05D001391 ORTHO05D005432 1.1e-151 540.4 328 81.7
QL06p022506 Quercus lobata HOM05D001391 ORTHO05D005432 1.8e-151 539.7 319 83.4
Psat7g134560 Pisum sativum HOM05D001391 ORTHO05D005432 4.0e-151 538.5 327 82.9
TWI31G1273 Tripterygium wilfordii HOM05D001391 ORTHO05D005432 3.4e-150 535.4 326 82.2
Eucgr.B03154 Eucalyptus grandis HOM05D001391 ORTHO05D005432 4.4e-150 535.0 326 80.4
QL03p072246 Quercus lobata HOM05D001391 ORTHO05D005432 2.2e-149 532.7 355 76.3
Glyma.20G025600 Glycine max HOM05D001391 ORTHO05D005432 2.9e-149 532.3 332 81.0
PGR102G1705 Punica granatum HOM05D001391 ORTHO05D005432 2.9e-149 532.3 318 83.0
Lj4g0006249 Lotus japonicus HOM05D001391 ORTHO05D005432 3.7e-149 531.9 334 80.2
Ca_18800_v3 Cicer arietinum L. HOM05D001391 ORTHO05D005432 6.4e-149 531.2 332 80.7
Lsat_1_v5_gn_3_53800 Lactuca sativa HOM05D001391 ORTHO05D005432 8.3e-149 530.8 338 79.9
MD16G1061600 Malus domestica HOM05D001391 ORTHO05D005432 8.3e-149 530.8 327 81.7
PGSC0003DMG400028375 Solanum tuberosum HOM05D001391 ORTHO05D005432 8.3e-149 530.8 311 84.9
RcHm_v2.0_Chr4g0438441 Rosa chinensis HOM05D001391 ORTHO05D005432 1.1e-148 530.4 320 82.5
Medtr4g083100 Medicago truncatula HOM05D001391 ORTHO05D005432 3.2e-148 528.9 332 80.1
MD13G1063100 Malus domestica HOM05D001391 ORTHO05D005432 4.1e-148 528.5 338 80.2
arahy.Tifrunner.gnm1.ann1.52K398 Arachis hypogaea HOM05D001391 ORTHO05D005432 7.1e-148 527.7 329 80.9
FvH4_4g30104 Fragaria vesca HOM05D001391 ORTHO05D005432 7.1e-148 527.7 323 81.1
FAN07G1596 Fragaria x ananassa HOM05D001391 ORTHO05D005432 7.1e-148 527.7 324 80.6
Duzib248G0196 Durio zibethinus HOM05D001391 ORTHO05D005432 2.1e-147 526.2 330 78.8
TPR.G34031 Trifolium pratense HOM05D001391 ORTHO05D005432 2.7e-147 525.8 335 78.5
THA.LOC104824058 Tarenaya hassleriana HOM05D001391 ORTHO05D005432 3.5e-147 525.4 334 78.7
FAN17G2247 Fragaria x ananassa HOM05D001391 ORTHO05D002605 4.6e-147 525.0 325 80.0
arahy.Tifrunner.gnm1.ann1.G55KBL Arachis hypogaea HOM05D001391 ORTHO05D005432 6.0e-147 524.6 327 81.0
Lalb_Chr05g0219941 Lupinus albus HOM05D001391 ORTHO05D005432 6.0e-147 524.6 328 80.8
Prupe.1G286500 Prunus persica HOM05D001391 ORTHO05D005432 7.8e-147 524.2 340 78.8
QL03p071709 Quercus lobata HOM05D001391 ORTHO05D005432 1.0e-146 523.9 321 80.7
Atru.chr11.1633 Acer truncatum HOM05D001391 ORTHO05D005432 1.3e-146 523.5 330 77.9
COL.COLO4_27891 Corchorus olitorius HOM05D001391 ORTHO05D005432 8.6e-146 520.8 341 76.5
MELO3C011425.2 Cucumis melo HOM05D001391 ORTHO05D005432 1.1e-145 520.4 335 77.6
Sed0003297 Sechium edule HOM05D001391 ORTHO05D005432 1.1e-145 520.4 336 75.6
Thecc.02G331500 Theobroma cacao HOM05D001391 ORTHO05D005432 1.9e-145 519.6 317 80.8
PSO017G5650 Papaver somniferum HOM05D001391 ORTHO05D005432 2.1e-144 516.2 333 77.2
CDE05G0079 Ceratophyllum demersum HOM05D001391 ORTHO05D005432 2.8e-144 515.8 333 76.9
PSO478G1327 Papaver somniferum HOM05D001391 ORTHO05D005432 4.7e-144 515.0 333 77.5
Aqoxy3G03632 Aquilegia oxysepala HOM05D001391 ORTHO05D005432 6.2e-144 514.6 339 75.8
DCAR_030039 Daucus carota HOM05D001391 ORTHO05D005432 6.2e-144 514.6 304 85.2
CANSAT64G0915 Cannabis sativa HOM05D001391 ORTHO05D005432 8.1e-144 514.2 326 77.6
VMungo0251G0716 Vigna mungo HOM05D001391 ORTHO05D005432 8.1e-144 514.2 357 74.5
Sed0027135 Sechium edule HOM05D001391 ORTHO05D005432 3.1e-143 512.3 336 75.9
BcaB07g30667 Brassica carinata HOM05D001391 ORTHO05D005432 5.2e-143 511.5 340 77.1
Nitab4.5_0001487g0070 Nicotiana tabacum HOM05D001391 ORTHO05D005432 5.2e-143 511.5 311 83.6
unitig_22.g6493 Utricularia gibba HOM05D001391 ORTHO05D005432 1.2e-142 510.4 342 76.6
THA.LOC104805193 Tarenaya hassleriana HOM05D001391 ORTHO05D005432 3.4e-142 508.8 327 78.9
A09p24460 Brassica napus HOM05D001391 ORTHO05D005432 5.8e-142 508.1 340 76.5
BraA09t38039Z Brassica rapa HOM05D001391 ORTHO05D005432 7.6e-142 507.7 340 76.5
BcaC04g21485 Brassica carinata HOM05D001391 ORTHO05D005432 2.2e-141 506.1 340 76.2
C09p31260 Brassica napus HOM05D001391 ORTHO05D005432 2.2e-141 506.1 340 76.2
BolC9t55982H Brassica oleracea HOM05D001391 ORTHO05D005432 2.2e-141 506.1 340 76.2
Sp2g14420 Schrenkiella parvula HOM05D001391 ORTHO05D005432 2.2e-141 506.1 340 75.6
Thhalv10004477m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 2.9e-141 505.8 340 75.9
Nitab4.5_0000231g0390 Nicotiana tabacum HOM05D001391 ORTHO05D005432 3.7e-141 505.4 308 83.4
Ah.02g126880 Amaranthus hybridus HOM05D001391 ORTHO05D005432 8.4e-141 504.2 325 77.2
FAN22G1389 Fragaria x ananassa HOM05D001391 ORTHO05D005432 1.1e-140 503.8 321 79.1
AUR62003104 Chenopodium quinoa HOM05D001391 ORTHO05D005432 1.4e-140 503.4 324 77.8
Aa31LG2G7090 Aethionema arabicum HOM05D001391 ORTHO05D005432 1.9e-140 503.1 340 75.3
CARHR145860 Cardamine hirsuta HOM05D001391 ORTHO05D005432 9.2e-140 500.7 340 74.7
Haze_11913 Corylus avellana HOM05D001391 ORTHO05D005432 9.2e-140 500.7 291 85.9
ATR0064G010 Amborella trichopoda HOM05D001391 ORTHO05D005432 1.2e-139 500.4 303 80.2
AL5G13280 Arabidopsis lyrata HOM05D001391 ORTHO05D005432 1.2e-139 500.4 326 77.6
BcaC03g17224 Brassica carinata HOM05D001391 ORTHO05D005432 4.6e-139 498.4 326 77.3
C02p51560 Brassica napus HOM05D001391 ORTHO05D005432 4.6e-139 498.4 326 77.3
BolC2t11243H Brassica oleracea HOM05D001391 ORTHO05D005432 4.6e-139 498.4 326 77.3
RcHm_v2.0_Chr4g0438461 Rosa chinensis HOM05D001391 ORTHO05D005432 1.0e-138 497.3 327 76.1
AT2G03510 Arabidopsis thaliana HOM05D001391 ORTHO05D005432 2.3e-138 496.1 326 77.0
Carub.0005s0265 Capsella rubella HOM05D001391 ORTHO05D005432 3.9e-138 495.4 338 74.9
Zm00001eb393170 Zea mays HOM05D001391 ORTHO05D005432 5.1e-138 495.0 328 76.2
EL10Ac6g14993 Beta vulgaris HOM05D001391 ORTHO05D005432 1.5e-137 493.4 311 78.1
Migut.L01194 Erythranthe guttata HOM05D001391 ORTHO05D005432 5.6e-137 491.5 320 77.2
TAR622G0883 Trochodendron aralioides HOM05D001391 ORTHO05D005432 2.1e-136 489.6 365 71.2
vmacro01316 Vaccinium macrocarpon HOM05D001391 ORTHO05D005432 4.0e-135 485.3 337 76.0
Lj6C779T14 Lonicera japonica HOM05D001391 ORTHO05D005432 5.2e-135 485.0 384 69.0
Gorai.013G093700 Gossypium raimondii HOM05D001391 ORTHO05D005432 7.6e-134 481.1 326 73.6
Dinv16729 Davidia involucrata HOM05D001391 ORTHO05D005432 1.7e-133 479.9 275 89.1
QL03p071737 Quercus lobata HOM05D001391 ORTHO05D005432 1.9e-132 476.5 311 77.8
Gohir.D13G081800 Gossypium hirsutum HOM05D001391 ORTHO05D005432 2.4e-132 476.1 323 73.4
HPP92_020445 Vanilla planifolia HOM05D001391 ORTHO05D005432 2.7e-131 472.6 309 75.7
QL03p071961 Quercus lobata HOM05D001391 ORTHO05D005432 3.5e-131 472.2 313 75.4
Hund05837 Selenicereus undatus HOM05D001391 ORTHO05D005432 6.6e-130 468.0 309 75.7
SMO364G0146 Selaginella moellendorffii HOM05D001391 ORTHO05D005432 1.1e-129 467.2 301 75.7
Sabra08G0071900 Salix brachista HOM05D001391 ORTHO05D005432 9.6e-129 464.2 343 73.2
PSO478G2440 Papaver somniferum HOM05D001391 ORTHO05D005432 2.1e-128 463.0 313 75.4
Zm00001eb020150 Zea mays HOM05D001391 ORTHO05D005432 2.8e-128 462.6 328 71.6
CsaV3_6G032550 Cucumis sativus L. HOM05D001391 ORTHO05D005432 1.8e-127 459.9 324 73.1
Glyma.07G225600 Glycine max HOM05D001391 ORTHO05D005432 3.0e-122 442.6 267 82.4
Pp3c1_8060 Physcomitrium patens HOM05D001391 ORTHO05D005432 3.9e-122 442.2 317 68.1
Mapoly0041s0056 Marchantia polymorpha HOM05D001391 ORTHO05D005432 5.1e-122 441.8 330 68.2
Phvul.002G102100 Phaseolus vulgaris HOM05D001391 ORTHO05D005432 5.1e-122 441.8 280 80.0
Pp3c2_37740 Physcomitrium patens HOM05D001391 ORTHO05D005432 8.7e-122 441.0 318 68.9
AagrBONN_evm.TU.Sc2ySwM_228.3454 Anthoceros agrestis HOM05D001391 ORTHO05D005432 4.8e-120 435.3 324 66.7
CBR_g22084 Chara braunii HOM05D001391 ORTHO05D005432 6.4e-117 424.9 294 70.4
Peaxi162Scf00175g00121 Petunia axillaris HOM05D001391 ORTHO05D005432 7.1e-116 421.4 245 85.7
ClCG08G010360 Citrullus lanatus HOM05D001391 ORTHO05D005432 1.0e-114 417.5 295 72.9
CsaV3_6G033630 Cucumis sativus L. HOM05D001391 ORTHO05D005432 1.0e-114 417.5 330 67.6
Cpa.g.sc1.121 Carica papaya HOM05D001391 ORTHO05D005432 5.1e-114 415.2 255 82.0
Nn4g23419 Nelumbo nucifera HOM05D001391 ORTHO05D005432 3.3e-113 412.5 339 66.7
Solyc05g012340.4 Solanum lycopersicum HOM05D001391 ORTHO05D005432 2.1e-112 409.8 235 87.7
Rhsim12G0074900 Rhododendron simsii HOM05D001391 ORTHO05D005432 1.8e-111 406.8 305 70.5
Thhalv10022792m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 1.7e-109 400.2 340 61.5
Thhalv10022979m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 1.7e-109 400.2 340 61.5
MBI16_g24179_MAGBIO Magnolia biondii HOM05D001391 ORTHO05D005432 2.7e-107 392.9 338 63.6
AUR62007921 Chenopodium quinoa HOM05D001391 ORTHO05D005432 4.6e-107 392.1 320 63.4
Sc11g0002420 Simmondsia chinensis HOM05D001391 ORTHO05D005432 1.1e-105 387.5 267 73.8
Eucgr.B03155 Eucalyptus grandis HOM05D001391 ORTHO05D005432 1.3e-104 384.0 240 78.8
CSS0036366 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 2.4e-95 353.2 240 77.9
Thecc.02G331800 Theobroma cacao HOM05D001391 ORTHO05D005432 1.9e-92 343.6 199 81.9
CDE02G0606 Ceratophyllum demersum HOM05D001391 ORTHO05D005432 1.6e-91 340.5 205 79.0
Nn3g17437 Nelumbo nucifera HOM05D001391 ORTHO05D005432 2.1e-91 340.1 335 57.3
Gohir.A13G082200 Gossypium hirsutum HOM05D001391 ORTHO05D005432 4.8e-88 328.9 199 79.4
Eucgr.B03159 Eucalyptus grandis HOM05D001391 ORTHO05D005432 1.2e-75 287.7 197 75.1
Gohir.D12G164650 Gossypium hirsutum HOM05D001391 ORTHO05D005432 5.9e-70 268.9 262 58.4
HanXRQChr08g0223901 Helianthus annuus HOM05D001391 ORTHO05D005432 7.7e-70 268.5 182 76.9
Hund25181 Selenicereus undatus HOM05D001391 ORTHO05D005432 5.0e-61 239.2 147 76.9
Gorai.008G177300 Gossypium raimondii HOM05D001391 ORTHO05D005432 4.4e-57 226.1 167 70.7
CSS0025210 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 4.3e-44 183.0 101 87.1
SEGI_41081 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 2.9e-40 170.2 129 66.7
SEGI_06703 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 6.4e-40 169.1 129 65.1
Hma1.2p1_1826F.1_g304410 Hydrangea macrophylla HOM05D001391 ORTHO05D005432 6.0e-38 162.5 131 69.5
SEGI_37700 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 3.0e-37 160.2 120 65.0
Gorai.008G177400 Gossypium raimondii HOM05D001391 ORTHO05D005432 3.1e-34 150.2 82 81.7
QL03p071882 Quercus lobata HOM05D001391 ORTHO05D005432 3.7e-32 143.3 117 70.1
Hma1.2p1_3404F.1_g335810 Hydrangea macrophylla HOM05D001391 ORTHO05D005432 4.9e-32 142.9 128 67.2
Hund25180 Selenicereus undatus HOM05D001391 ORTHO05D005432 4.6e-30 136.3 99 68.7
QL01p050908 Quercus lobata HOM05D001391 ORTHO05D005432 6.6e-29 132.5 119 58.0
Mapoly0004s0019 Marchantia polymorpha HOM05D001391 ORTHO05D005432 5.8e-25 119.4 277 29.6
SEGI_28419 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 3.5e-22 110.2 86 60.5
Gohir.A13G082366 Gossypium hirsutum HOM05D001391 ORTHO05D005432 3.0e-21 107.1 88 64.8
BcaB07g30295 Brassica carinata HOM05D001391 ORTHO05D005432 5.6e-20 102.8 79 74.7
Os03g0421400 Oryza sativa ssp. japonica HOM05D001391 ORTHO05D005432 2.0e-17 94.4 79 63.3
SEGI_38290 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 3.4e-17 93.6 56 71.4
SEGI_10839 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 2.9e-16 90.5 75 58.7
QL01p050911 Quercus lobata HOM05D001391 ORTHO05D005432 1.6e-14 84.7 73 65.8
MD16G1164500 Malus domestica HOM05D001391 ORTHO05D005432 2.1e-14 84.3 43 83.7


User provided reference genes

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