Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3C1029T7 Lonicera japonica HOM05D004399 ORTHO05D005303 5.7e-135 484.2 232 100.0
Dinv34060 Davidia involucrata HOM05D004399 ORTHO05D005303 2.4e-117 425.6 225 87.1
PGSC0003DMG402028313 Solanum tuberosum HOM05D004399 ORTHO05D005303 1.7e-115 419.5 223 86.5
Nn3g17119 Nelumbo nucifera HOM05D004399 ORTHO05D005303 2.2e-115 419.1 223 85.7
Lj6A777T47 Lonicera japonica HOM05D004399 ORTHO05D005303 2.9e-115 418.7 221 88.2
HanXRQChr12g0363151 Helianthus annuus HOM05D004399 ORTHO05D005303 5.0e-115 417.9 222 86.9
TAR622G1336 Trochodendron aralioides HOM05D004399 ORTHO05D005303 1.9e-114 416.0 221 86.9
Nn4g24779 Nelumbo nucifera HOM05D004399 ORTHO05D005303 2.5e-114 415.6 223 85.2
Solyc05g012150.4 Solanum lycopersicum HOM05D004399 ORTHO05D005303 2.5e-114 415.6 223 85.7
Peaxi162Scf00175g00428 Petunia axillaris HOM05D004399 ORTHO05D005303 3.2e-114 415.2 223 86.1
CAN.G707.11 Capsicum annuum HOM05D004399 ORTHO05D005303 5.5e-114 414.5 223 85.2
Manes.05G109300 Manihot esculenta HOM05D004399 ORTHO05D005303 5.5e-114 414.5 221 86.4
vmacro10433 Vaccinium macrocarpon HOM05D004399 ORTHO05D005303 5.5e-114 414.5 223 87.0
CSS0044473 Camellia sinensis var. sinensis HOM05D004399 ORTHO05D005303 7.2e-114 414.1 225 84.0
Duzib251G0565 Durio zibethinus HOM05D004399 ORTHO05D005303 9.4e-114 413.7 222 86.5
Sopen05g006940 Solanum pennellii HOM05D004399 ORTHO05D005303 9.4e-114 413.7 223 85.2
ECA233G2368 Erigeron canadensis HOM05D004399 ORTHO05D005303 2.1e-113 412.5 222 85.1
TWI75G0511 Tripterygium wilfordii HOM05D004399 ORTHO05D005303 2.1e-113 412.5 222 85.6
COL.COLO4_27864 Corchorus olitorius HOM05D004399 ORTHO05D005303 2.7e-113 412.1 225 85.8
CANSAT11G0637 Cannabis sativa HOM05D004399 ORTHO05D005303 3.6e-113 411.8 221 84.6
MD13G1060600 Malus domestica HOM05D004399 ORTHO05D005303 6.1e-113 411.0 223 84.8
PSO017G5651 Papaver somniferum HOM05D004399 ORTHO05D005303 6.1e-113 411.0 223 84.3
PSO832G2862 Papaver somniferum HOM05D004399 ORTHO05D005303 6.1e-113 411.0 223 85.2
Prupe.1G288800 Prunus persica HOM05D004399 ORTHO05D005303 6.1e-113 411.0 221 86.4
SGA_v2.0_scaffold16G07803 Striga asiatica HOM05D004399 ORTHO05D005303 6.1e-113 411.0 225 84.4
Migut.L01179 Erythranthe guttata HOM05D004399 ORTHO05D005303 8.0e-113 410.6 223 86.5
HanXRQChr08g0211681 Helianthus annuus HOM05D004399 ORTHO05D005303 8.0e-113 410.6 222 86.0
QL03p073920 Quercus lobata HOM05D004399 ORTHO05D005303 8.0e-113 410.6 223 85.2
MSTRG.7738 Avicennia marina HOM05D004399 ORTHO05D005303 1.0e-112 410.2 223 86.1
Cc06_g15640 Coffea canephora HOM05D004399 ORTHO05D005303 1.0e-112 410.2 223 84.3
Thecc.02G328800 Theobroma cacao HOM05D004399 ORTHO05D005303 1.0e-112 410.2 222 86.0
Phvul.010G102900 Phaseolus vulgaris HOM05D004399 ORTHO05D005303 1.4e-112 409.8 221 85.1
CiPaw.05G124200 Carya illinoinensis HOM05D004399 ORTHO05D005303 1.8e-112 409.5 221 85.1
Gohir.A03G104700 Gossypium hirsutum HOM05D004399 ORTHO05D005303 1.8e-112 409.5 222 85.1
Rhsim09G0126300 Rhododendron simsii HOM05D004399 ORTHO05D005303 1.8e-112 409.5 236 82.2
RcHm_v2.0_Chr4g0438081 Rosa chinensis HOM05D004399 ORTHO05D005303 1.8e-112 409.5 221 84.6
Aqoxy3G03260 Aquilegia oxysepala HOM05D004399 ORTHO05D005303 2.3e-112 409.1 222 85.6
PGR083G0959 Punica granatum HOM05D004399 ORTHO05D005303 2.3e-112 409.1 221 85.5
Ah.02g126810 Amaranthus hybridus HOM05D004399 ORTHO05D005303 3.0e-112 408.7 223 84.8
Ca_08608_v3 Cicer arietinum L. HOM05D004399 ORTHO05D005303 5.2e-112 407.9 223 85.2
FvH4_4g29830 Fragaria vesca HOM05D004399 ORTHO05D005303 5.2e-112 407.9 221 85.5
Sc11g0002530 Simmondsia chinensis HOM05D004399 ORTHO05D005303 5.2e-112 407.9 223 84.3
Psat3g063920 Pisum sativum HOM05D004399 ORTHO05D005303 6.7e-112 407.5 221 85.5
VMungo0331G0538 Vigna mungo HOM05D004399 ORTHO05D005303 8.8e-112 407.1 221 84.6
Ca_25695_v3 Cicer arietinum L. HOM05D004399 ORTHO05D005303 1.2e-111 406.8 225 84.9
Eucgr.B03145 Eucalyptus grandis HOM05D004399 ORTHO05D005303 1.2e-111 406.8 221 86.0
CANSAT64G2641 Cannabis sativa HOM05D004399 ORTHO05D005303 1.5e-111 406.4 221 84.6
Cpa.g.sc1.139 Carica papaya HOM05D004399 ORTHO05D005303 1.5e-111 406.4 221 84.2
DCAR_024127 Daucus carota HOM05D004399 ORTHO05D005303 1.5e-111 406.4 218 87.2
Lj1g0019699 Lotus japonicus HOM05D004399 ORTHO05D005303 1.5e-111 406.4 221 86.9
FAN22G0874 Fragaria x ananassa HOM05D004399 ORTHO05D005303 2.0e-111 406.0 221 84.6
Lsat_1_v5_gn_8_46460 Lactuca sativa HOM05D004399 ORTHO05D005303 2.6e-111 405.6 223 84.8
MBI14_g37191_MAGBIO Magnolia biondii HOM05D004399 ORTHO05D005303 3.3e-111 405.2 229 79.9
arahy.Tifrunner.gnm1.ann1.MJW4NY Arachis hypogaea HOM05D004399 ORTHO05D005303 4.4e-111 404.8 221 86.0
EL10Ac6g15013 Beta vulgaris HOM05D004399 ORTHO05D005303 4.4e-111 404.8 225 84.9
FAN12G0059 Fragaria x ananassa HOM05D004399 ORTHO05D005303 5.7e-111 404.4 221 85.1
FAN17G2847 Fragaria x ananassa HOM05D004399 ORTHO05D005303 5.7e-111 404.4 221 84.6
Ah.03g138840 Amaranthus hybridus HOM05D004399 ORTHO05D005303 7.5e-111 404.1 223 83.9
Nitab4.5_0007061g0010 Nicotiana tabacum HOM05D004399 ORTHO05D005303 9.7e-111 403.7 223 84.3
Glyma.16G032800 Glycine max HOM05D004399 ORTHO05D005303 1.3e-110 403.3 222 84.7
Potri.008G097100 Populus trichocarpa HOM05D004399 ORTHO05D005303 1.3e-110 403.3 221 85.1
Ciclev10032681m.g Citrus clementina HOM05D004399 ORTHO05D005303 2.8e-110 402.1 221 83.3
SalBow4G1206 Salvia bowleyana HOM05D004399 ORTHO05D005303 2.8e-110 402.1 227 82.4
Potri.010G157500 Populus trichocarpa HOM05D004399 ORTHO05D005303 3.7e-110 401.7 221 85.1
Hund05832 Selenicereus undatus HOM05D004399 ORTHO05D005303 3.7e-110 401.7 223 83.4
Aa31LG2G6990 Aethionema arabicum HOM05D004399 ORTHO05D005303 6.3e-110 401.0 220 83.6
AUR62003087 Chenopodium quinoa HOM05D004399 ORTHO05D005303 6.3e-110 401.0 221 84.2
Medtr4g094990 Medicago truncatula HOM05D004399 ORTHO05D005303 6.3e-110 401.0 221 84.2
PSO478G0010 Papaver somniferum HOM05D004399 ORTHO05D005303 8.2e-110 400.6 223 83.4
arahy.Tifrunner.gnm1.ann1.E76E6E Arachis hypogaea HOM05D004399 ORTHO05D005303 1.1e-109 400.2 221 85.5
Haze_11894 Corylus avellana HOM05D004399 ORTHO05D005303 1.1e-109 400.2 228 81.6
Lalb_Chr17g0341271 Lupinus albus HOM05D004399 ORTHO05D005303 1.1e-109 400.2 217 85.7
MD16G1059800 Malus domestica HOM05D004399 ORTHO05D005303 1.1e-109 400.2 223 83.4
Cfa008867 Carpinus fangiana HOM05D004399 ORTHO05D005303 1.4e-109 399.8 223 83.4
Aqoxy4G03091 Aquilegia oxysepala HOM05D004399 ORTHO05D005303 1.8e-109 399.4 219 83.6
MELO3C011412.2 Cucumis melo HOM05D004399 ORTHO05D005303 2.4e-109 399.1 226 81.4
CsaV3_6G033760 Cucumis sativus L. HOM05D004399 ORTHO05D005303 3.1e-109 398.7 226 81.4
Hma1.2p1_0566F.1_g179870 Hydrangea macrophylla HOM05D004399 ORTHO05D005303 5.3e-109 397.9 221 83.3
Oeu031535.3 Olea europaea HOM05D004399 ORTHO05D005303 5.3e-109 397.9 252 75.0
Medtr7g095060 Medicago truncatula HOM05D004399 ORTHO05D005303 7.0e-109 397.5 221 82.8
A06p42990 Brassica napus HOM05D004399 ORTHO05D005303 9.1e-109 397.1 220 83.6
Carub.0005s0281 Capsella rubella HOM05D004399 ORTHO05D005303 1.2e-108 396.7 221 82.8
THA.LOC104805201 Tarenaya hassleriana HOM05D004399 ORTHO05D005303 1.2e-108 396.7 220 84.1
Sabra08G0073300 Salix brachista HOM05D004399 ORTHO05D005303 1.6e-108 396.4 218 85.8
BcaC06g31162 Brassica carinata HOM05D004399 ORTHO05D005303 2.0e-108 396.0 220 83.2
C07p34040 Brassica napus HOM05D004399 ORTHO05D005303 2.0e-108 396.0 220 83.2
BolC7t43918H Brassica oleracea HOM05D004399 ORTHO05D005303 2.0e-108 396.0 220 83.2
Nitab4.5_0000231g0090 Nicotiana tabacum HOM05D004399 ORTHO05D005303 2.0e-108 396.0 243 77.0
Gorai.005G145900 Gossypium raimondii HOM05D004399 ORTHO05D005303 3.5e-108 395.2 207 87.9
AL5G13480 Arabidopsis lyrata HOM05D004399 ORTHO05D005303 4.5e-108 394.8 221 82.8
DCAR_026680 Daucus carota HOM05D004399 ORTHO05D005303 4.5e-108 394.8 221 85.1
Glyma.07G066700 Glycine max HOM05D004399 ORTHO05D005303 4.5e-108 394.8 222 82.4
Sp2g14510 Schrenkiella parvula HOM05D004399 ORTHO05D005303 4.5e-108 394.8 220 83.2
AUR62007904 Chenopodium quinoa HOM05D004399 ORTHO05D005303 5.9e-108 394.4 221 82.4
Thhalv10004874m.g Eutrema salsugineum HOM05D004399 ORTHO05D005303 7.7e-108 394.0 220 83.6
BcaC06g31172 Brassica carinata HOM05D004399 ORTHO05D005303 1.0e-107 393.7 220 83.2
ClCG08G010510 Citrullus lanatus HOM05D004399 ORTHO05D005303 1.0e-107 393.7 225 82.2
Gohir.D02G129900 Gossypium hirsutum HOM05D004399 ORTHO05D005303 1.7e-107 392.9 207 87.4
Medtr4g094998 Medicago truncatula HOM05D004399 ORTHO05D005303 2.2e-107 392.5 221 81.9
Atru.chr11.1611 Acer truncatum HOM05D004399 ORTHO05D005303 2.9e-107 392.1 223 82.1
AL5G13460 Arabidopsis lyrata HOM05D004399 ORTHO05D005303 5.0e-107 391.3 221 81.9
AT2G03690 Arabidopsis thaliana HOM05D004399 ORTHO05D005303 8.5e-107 390.6 221 81.9
BcaB07g30287 Brassica carinata HOM05D004399 ORTHO05D005303 2.5e-106 389.0 220 81.8
SalBow2G2941 Salvia bowleyana HOM05D004399 ORTHO05D005303 2.5e-106 389.0 282 68.4
BcaC03g17230 Brassica carinata HOM05D004399 ORTHO05D005303 1.6e-105 386.3 220 81.8
BolC2t11249H Brassica oleracea HOM05D004399 ORTHO05D005303 1.6e-105 386.3 220 81.8
CARHR146010 Cardamine hirsuta HOM05D004399 ORTHO05D005303 1.6e-105 386.3 221 81.9
A02p33520 Brassica napus HOM05D004399 ORTHO05D005303 2.7e-105 385.6 220 81.4
Os04g0674200 Oryza sativa ssp. japonica HOM05D004399 ORTHO05D005303 1.0e-104 383.6 222 78.4
Sed0000590 Sechium edule HOM05D004399 ORTHO05D005303 4.0e-104 381.7 222 79.3
Os05g0188800 Oryza sativa ssp. japonica HOM05D004399 ORTHO05D005303 5.2e-104 381.3 222 77.9
Zm00001eb433530 Zea mays HOM05D004399 ORTHO05D005303 6.8e-104 380.9 220 78.6
CDE02G0376 Ceratophyllum demersum HOM05D004399 ORTHO05D005303 1.5e-103 379.8 216 80.6
TPR.G29232 Trifolium pratense HOM05D004399 ORTHO05D005303 4.8e-102 374.8 221 80.5
Sed0002833 Sechium edule HOM05D004399 ORTHO05D005303 1.4e-101 373.2 222 78.4
CDE04G3031 Ceratophyllum demersum HOM05D004399 ORTHO05D005303 1.8e-101 372.9 216 78.7
C02p51640 Brassica napus HOM05D004399 ORTHO05D005303 2.1e-97 359.4 208 81.2
SEGI_29941 Sequoiadendron giganteum HOM05D004399 ORTHO05D005303 3.4e-95 352.1 218 70.6
AUR62019674 Chenopodium quinoa HOM05D004399 ORTHO05D005303 1.8e-93 346.3 231 72.3
AagrBONN_evm.TU.Sc2ySwM_368.1886 Anthoceros agrestis HOM05D004399 ORTHO05D005303 8.6e-91 337.4 227 68.7
Mapoly0124s0026 Marchantia polymorpha HOM05D004399 ORTHO05D005303 6.1e-89 331.3 219 68.9
Pp3c2_220 Physcomitrium patens HOM05D004399 ORTHO05D005303 9.8e-87 323.9 213 67.6
SMO196G0238 Selaginella moellendorffii HOM05D004399 ORTHO05D005303 3.9e-83 312.0 219 64.8
GSVIVG01000552001 Vitis vinifera HOM05D004399 ORTHO05D005303 1.9e-77 293.1 163 85.3
MD13G1061300 Malus domestica HOM05D004399 ORTHO05D005303 4.1e-77 292.0 164 86.0
SalBow4G2688 Salvia bowleyana HOM05D004399 ORTHO05D005303 7.0e-77 291.2 153 86.3
Sed0017877 Sechium edule HOM05D004399 ORTHO05D005303 3.9e-75 285.4 169 75.7
ATR1120G108 Amborella trichopoda HOM05D004399 ORTHO05D005303 1.6e-73 280.0 162 75.9
CBR_g38753 Chara braunii HOM05D004399 ORTHO05D001303 2.4e-69 266.2 215 58.1
SalBow4G1336 Salvia bowleyana HOM05D004399 ORTHO05D005303 5.1e-67 258.5 166 73.5
TPR.G35678 Trifolium pratense HOM05D004399 ORTHO05D005303 1.8e-64 250.0 128 85.9
Cre03.g154850 Chlamydomonas reinhardtii HOM05D004399 ORTHO05D005303 1.2e-60 237.3 221 52.5
HanXRQChr10g0298331 Helianthus annuus HOM05D004399 ORTHO05D005303 3.5e-60 235.7 129 83.7
PRCOL_00001738 Prasinoderma coloniale HOM05D004399 ORTHO05D005303 1.7e-59 233.4 211 54.5
vmacro20929 Vaccinium macrocarpon HOM05D004399 ORTHO05D005303 4.2e-53 212.2 148 73.6
MCO10G350 Micromonas commoda HOM05D004399 ORTHO05D005303 5.4e-53 211.8 209 47.4
unitig_8.g3180 Utricularia gibba HOM05D004399 ORTHO05D005303 7.8e-52 208.0 136 75.7
Phvul.007G165400 Phaseolus vulgaris HOM05D004399 ORTHO05D005303 1.5e-50 203.8 112 78.6
Glyma.02G119500 Glycine max HOM05D004399 ORTHO05D005303 3.1e-48 196.1 112 75.9
SMO187G0002 Selaginella moellendorffii HOM05D004399 ORTHO05D005303 2.8e-41 172.9 130 57.7
MBI14_g45258_MAGBIO Magnolia biondii HOM05D004399 ORTHO05D005303 6.2e-41 171.8 94 76.6
Carub.0005s2415 Capsella rubella HOM05D004399 ORTHO05D005303 1.9e-37 160.2 102 74.5
HanXRQChr13g0414251 Helianthus annuus HOM05D004399 ORTHO05D005303 1.1e-34 151.0 97 80.4
Cfa024149 Carpinus fangiana HOM05D004399 ORTHO05D005303 6.5e-30 135.2 209 34.9
BcaB07g30659 Brassica carinata HOM05D004399 ORTHO05D005303 1.9e-29 133.7 134 50.7
FAN04G2106 Fragaria x ananassa HOM05D004399 ORTHO05D005303 2.7e-28 129.8 74 85.1
SalBow4G1060 Salvia bowleyana HOM05D004399 ORTHO05D005303 6.0e-28 128.6 67 86.6
TPR.G30910 Trifolium pratense HOM05D004399 ORTHO05D005303 1.3e-27 127.5 61 95.1
Phvul.007G165450 Phaseolus vulgaris HOM05D004399 ORTHO05D005303 1.1e-26 124.4 78 79.5
Actinidia12918 Actinidia chinensis HOM05D004399 ORTHO05D005303 1.1e-24 117.9 83 63.9
SalBow4G1755 Salvia bowleyana HOM05D004399 ORTHO05D005303 4.5e-23 112.5 59 76.3
HanXRQChr01g0013031 Helianthus annuus HOM05D004399 ORTHO05D005303 1.6e-20 104.0 54 85.2
SalBow4G1426 Salvia bowleyana HOM05D000195 ORTHO05D000377 2.1e-20 103.6 60 85.0
RcHm_v2.0_Chr7g0182561 Rosa chinensis HOM05D004399 ORTHO05D005303 2.3e-19 100.1 60 83.3
ATR1120G192 Amborella trichopoda HOM05D004399 ORTHO05D005303 5.1e-19 99.0 61 77.0
Nn4g23036 Nelumbo nucifera HOM05D004399 ORTHO05D005303 2.8e-17 93.2 64 70.3
TPR.G35682 Trifolium pratense HOM05D004399 ORTHO05D005303 3.7e-17 92.8 64 71.9
HPP92_015023 Vanilla planifolia HOM05D000240 ORTHO05D001153 3.4e-15 86.3 100 48.0
Glyma.07G066400 Glycine max HOM05D004399 ORTHO05D005303 1.0e-14 84.7 54 77.8
FAN08G1770 Fragaria x ananassa HOM05D004399 ORTHO05D005303 6.5e-14 82.0 127 44.9
SEGI_28424 Sequoiadendron giganteum HOM05D004399 ORTHO05D005303 3.6e-12 76.3 50 72.0
A09p24540 Brassica napus HOM05D004399 ORTHO05D005303 2.6e-10 70.1 39 76.9
DCAR_028902 Daucus carota HOM05D004399 ORTHO05D175529 1.5e-07 60.8 43 69.8
SalBow4G0663 Salvia bowleyana HOM05D000195 ORTHO05D000377 4.5e-07 59.3 35 80.0


User provided reference genes

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