Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3C1016G2 Lonicera japonica HOM05D008456 ORTHO05D010229 1.0e-41 172.9 84 100.0
Actinidia16647 Actinidia chinensis HOM05D008456 ORTHO05D010229 1.7e-28 129.0 84 78.6
CSS0032252 Camellia sinensis var. sinensis HOM05D008456 ORTHO05D010229 1.7e-28 129.0 84 77.4
Hund25068 Selenicereus undatus HOM05D008456 ORTHO05D010229 5.8e-21 104.0 85 68.2
vmacro10553 Vaccinium macrocarpon HOM05D008456 ORTHO05D010229 1.1e-19 99.8 78 69.2
EL10Ac6g14422 Beta vulgaris HOM05D008456 ORTHO05D010229 1.4e-19 99.4 85 68.2
CiPaw.16G064600 Carya illinoinensis HOM05D008456 ORTHO05D010229 3.2e-19 98.2 88 61.4
CSS0026237 Camellia sinensis var. sinensis HOM05D008456 ORTHO05D010229 1.6e-18 95.9 84 65.5
CSS0028970 Camellia sinensis var. sinensis HOM05D008456 ORTHO05D010229 4.6e-18 94.4 84 64.3
Glyma.10G274651 Glycine max HOM05D008456 ORTHO05D010229 4.6e-18 94.4 88 63.6
Haze_17475 Corylus avellana HOM05D008456 ORTHO05D010229 1.3e-17 92.8 89 58.4
Manes.14G101800 Manihot esculenta HOM05D008456 ORTHO05D010229 1.3e-17 92.8 89 61.8
GSVIVG01011903001 Vitis vinifera HOM05D008456 ORTHO05D010229 3.0e-17 91.7 84 61.9
Solyc05g009460.3 Solanum lycopersicum HOM05D008456 ORTHO05D010229 6.6e-17 90.5 86 59.3
Prupe.1G310000 Prunus persica HOM05D008456 ORTHO05D010229 1.5e-16 89.4 88 61.4
Phvul.007G026950 Phaseolus vulgaris HOM05D008456 ORTHO05D010229 1.9e-16 89.0 93 55.9
SalBow8G1526 Salvia bowleyana HOM05D008456 ORTHO05D010229 4.3e-16 87.8 87 64.4
Cc11_g10220 Coffea canephora HOM05D008456 ORTHO05D010229 9.5e-16 86.7 85 57.6
Thecc.02G355800 Theobroma cacao HOM05D008456 ORTHO05D010229 6.2e-15 84.0 93 54.8
Gorai.013G076200 Gossypium raimondii HOM05D008456 ORTHO05D010229 4.0e-14 81.3 88 58.0
Glyma.20G115200 Glycine max HOM05D008456 ORTHO05D010229 6.8e-14 80.5 115 46.1
Gohir.A12G167400 Gossypium hirsutum HOM05D008456 ORTHO05D010229 8.9e-14 80.1 94 52.1
Lj5g0022784 Lotus japonicus HOM05D008456 ORTHO05D010229 1.5e-13 79.3 62 67.7
Nitab4.5_0003330g0080 Nicotiana tabacum HOM05D008456 ORTHO05D010229 1.5e-13 79.3 63 65.1
Gohir.D13G066900 Gossypium hirsutum HOM05D008456 ORTHO05D010229 2.0e-13 79.0 88 56.8
CsaV3_6G003500 Cucumis sativus L. HOM05D008456 ORTHO05D010229 2.6e-13 78.6 85 58.8
ECA233G2223 Erigeron canadensis HOM05D008456 ORTHO05D010229 2.6e-13 78.6 85 57.6
Gohir.A13G055200 Gossypium hirsutum HOM05D008456 ORTHO05D010229 3.4e-13 78.2 88 56.8
Gohir.D12G170800 Gossypium hirsutum HOM05D008456 ORTHO05D010229 4.4e-13 77.8 94 52.1
Gorai.008G183400 Gossypium raimondii HOM05D008456 ORTHO05D010229 4.4e-13 77.8 94 52.1
arahy.Tifrunner.gnm1.ann1.J0DG7J Arachis hypogaea HOM05D008456 ORTHO05D010229 5.8e-13 77.4 93 53.8
MD16G1043600 Malus domestica HOM05D008456 ORTHO05D010229 5.8e-13 77.4 84 54.8
Sc04g0006490 Simmondsia chinensis HOM05D008456 ORTHO05D010229 9.9e-13 76.6 87 59.8
Manes.06G069000 Manihot esculenta HOM05D008456 ORTHO05D010229 1.7e-12 75.9 94 50.0
CiPaw.15G084200 Carya illinoinensis HOM05D008456 ORTHO05D010229 4.9e-12 74.3 90 53.3
Lj6C759T21 Lonicera japonica HOM05D000497 ORTHO05D002300 4.9e-12 74.3 64 65.6
Potri.010G125700 Populus trichocarpa HOM05D008456 ORTHO05D010229 7.1e-11 70.5 97 47.4
TAR622G0689 Trochodendron aralioides HOM05D008456 ORTHO05D010229 2.1e-10 68.9 84 52.4
Rhsim09G0108500 Rhododendron simsii HOM05D000497 ORTHO05D002300 3.5e-10 68.2 59 66.1
Migut.E00334 Erythranthe guttata HOM05D008456 ORTHO05D010229 6.0e-10 67.4 84 51.2
Medtr8g023670 Medicago truncatula HOM05D008456 ORTHO05D010229 6.0e-10 67.4 83 54.2
Oeu014305.1 Olea europaea HOM05D000497 ORTHO05D002300 2.3e-09 65.5 79 53.2
HanXRQChr16g0529291 Helianthus annuus HOM05D008456 ORTHO05D010229 3.0e-09 65.1 75 49.3
TAR374G1021 Trochodendron aralioides HOM05D008456 ORTHO05D010229 3.9e-09 64.7 89 50.6
FAN22G1960 Fragaria x ananassa HOM05D008456 ORTHO05D010229 2.8e-07 58.5 96 44.8
CiPaw.03G230800 Carya illinoinensis HOM05D008456 ORTHO05D010229 4.7e-07 57.8 117 39.3
Potri.008G120050 Populus trichocarpa HOM05D008456 ORTHO05D010229 6.2e-07 57.4 93 47.3
unitig_22.g5569 Utricularia gibba HOM05D008456 ORTHO05D010229 6.2e-07 57.4 73 49.3
BraA07t30825Z Brassica rapa HOM05D011059 ORTHO05D010229 1.4e-06 56.2 38 65.8
Carub.0002s1507 Capsella rubella HOM05D011059 ORTHO05D010229 1.4e-06 56.2 38 65.8
Migut.L01069 Erythranthe guttata HOM05D008456 ORTHO05D010229 1.8e-06 55.8 51 62.7
FvH4_4g27490 Fragaria vesca HOM05D008456 ORTHO05D010229 2.4e-06 55.5 95 43.2
A02p15160 Brassica napus HOM05D011059 ORTHO05D010229 3.1e-06 55.1 38 65.8
BraA02t06581Z Brassica rapa HOM05D011059 ORTHO05D010229 3.1e-06 55.1 38 65.8
CARHR061330 Cardamine hirsuta HOM05D011059 ORTHO05D010229 3.1e-06 55.1 38 63.2
FAN12G3215 Fragaria x ananassa HOM05D008456 ORTHO05D010229 5.2e-06 54.3 95 42.1
Aa31sc621G20 Aethionema arabicum HOM05D011059 ORTHO05D010229 6.9e-06 53.9 43 62.8
THA.LOC104821939 Tarenaya hassleriana HOM05D011059 ORTHO05D010229 6.9e-06 53.9 88 48.9


User provided reference genes

Program Settings