Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3C1005T3 Lonicera japonica HOM05D011389 ORTHO05D006108 4.7e-126 455.7 510 100.0
Lj3A1005G41 Lonicera japonica HOM05D011389 ORTHO05D006108 9.8e-55 218.8 435 77.9
TAR623G0376 Trochodendron aralioides HOM05D006485 ORTHO05D006108 3.6e-17 94.0 94 56.4
Rhsim04G0137200 Rhododendron simsii HOM05D000023 ORTHO05D000014 9.9e-15 85.9 81 63.0
FAN09G1969 Fragaria x ananassa HOM05D006485 ORTHO05D006108 2.9e-14 84.3 120 44.2
FAN14G0187 Fragaria x ananassa HOM05D006485 ORTHO05D006108 2.9e-14 84.3 120 45.0
FAN02G3096 Fragaria x ananassa HOM05D006485 ORTHO05D006108 3.8e-14 84.0 136 40.4
FAN09G4412 Fragaria x ananassa HOM05D006485 ORTHO05D006108 6.4e-14 83.2 120 44.2
Hund12313 Selenicereus undatus HOM05D006485 ORTHO05D006108 8.4e-14 82.8 119 47.9
FAN05G3442 Fragaria x ananassa HOM05D006485 ORTHO05D006108 3.2e-13 80.9 121 46.3
vmacro08809 Vaccinium macrocarpon HOM05D011389 ORTHO05D006108 4.2e-13 80.5 61 68.9
Actinidia32467 Actinidia chinensis HOM05D011389 ORTHO05D006108 5.4e-13 80.1 81 59.3
PGSC0003DMG400020976 Solanum tuberosum HOM05D011389 ORTHO05D006108 1.6e-12 78.6 77 59.7
Nitab4.5_0011622g0020 Nicotiana tabacum HOM05D011389 ORTHO05D006108 3.5e-12 77.4 68 63.2
Sopen11g019160 Solanum pennellii HOM05D011389 ORTHO05D006108 4.6e-12 77.0 77 58.4
Peaxi162Scf00078g00310 Petunia axillaris HOM05D011389 ORTHO05D006108 6.0e-12 76.6 77 57.1
Ah.15g091240 Amaranthus hybridus HOM05D011389 ORTHO05D006108 7.8e-12 76.3 116 46.6
A05p09230 Brassica napus HOM05D006485 ORTHO05D006108 7.8e-12 76.3 74 56.8
Sc02g0001270 Simmondsia chinensis HOM05D006485 ORTHO05D006108 7.8e-12 76.3 121 42.1
FAN05G4746 Fragaria x ananassa HOM05D006485 ORTHO05D006108 1.3e-11 75.5 120 45.0
Solyc11g042800.2 Solanum lycopersicum HOM05D011389 ORTHO05D006108 1.7e-11 75.1 77 58.4
AT2G36640 Arabidopsis thaliana HOM05D006485 ORTHO05D006108 3.9e-11 73.9 77 57.1
CSS0031113 Camellia sinensis var. sinensis HOM05D006485 ORTHO05D006108 3.9e-11 73.9 125 44.8
SGA_v2.0_scaffold118G32589 Striga asiatica HOM05D011389 ORTHO05D006108 6.6e-11 73.2 98 50.0
Carub.0004s1846 Capsella rubella HOM05D006485 ORTHO05D006108 1.1e-10 72.4 97 48.5
Peaxi162Scf00078g00039 Petunia axillaris HOM05D011389 ORTHO05D006108 3.3e-10 70.9 88 55.7
Sp4g18920 Schrenkiella parvula HOM05D006485 ORTHO05D006108 3.3e-10 70.9 105 47.6
Manes.08G018000 Manihot esculenta HOM05D006485 ORTHO05D006108 7.3e-10 69.7 109 46.8
AL4G32820 Arabidopsis lyrata HOM05D006485 ORTHO05D006108 9.6e-10 69.3 77 54.5
Ciclev10013512m.g Citrus clementina HOM05D006485 ORTHO05D006108 9.6e-10 69.3 114 48.2
Thhalv10017525m.g Eutrema salsugineum HOM05D006485 ORTHO05D006108 1.3e-09 68.9 98 48.0
EL10Ac7g16753 Beta vulgaris HOM05D006485 ORTHO05D006108 1.6e-09 68.6 85 47.1
FvH4_6g17400 Fragaria vesca HOM05D006485 ORTHO05D006108 1.6e-09 68.6 117 40.2
Nitab4.5_0011622g0030 Nicotiana tabacum HOM05D011389 ORTHO05D006108 2.8e-09 67.8 84 51.2
PGR004G2529 Punica granatum HOM05D006485 ORTHO05D006108 2.8e-09 67.8 114 41.2
Aa31LG5G21840 Aethionema arabicum HOM05D006485 ORTHO05D006108 6.2e-09 66.6 78 50.0
AUR62040165 Chenopodium quinoa HOM05D006485 ORTHO05D006108 6.2e-09 66.6 107 40.2
AUR62037914 Chenopodium quinoa HOM05D006485 ORTHO05D006108 1.1e-08 65.9 109 40.4
Cfa016504 Carpinus fangiana HOM05D006485 ORTHO05D006108 1.4e-08 65.5 90 47.8
CiPaw.10G003000 Carya illinoinensis HOM05D006485 ORTHO05D006108 1.4e-08 65.5 92 45.7
Migut.C01359 Erythranthe guttata HOM05D011389 ORTHO05D006108 1.8e-08 65.1 84 48.8
QL07p041110 Quercus lobata HOM05D006485 ORTHO05D006108 1.8e-08 65.1 93 50.5
PGSC0003DMG400002731 Solanum tuberosum HOM05D006485 ORTHO05D006108 1.8e-08 65.1 92 44.6
PSO063G6051 Papaver somniferum HOM05D006485 ORTHO05D006108 2.4e-08 64.7 117 39.3
RcHm_v2.0_Chr3g0471651 Rosa chinensis HOM05D006485 ORTHO05D006108 2.4e-08 64.7 142 40.1
Cfa020727 Carpinus fangiana HOM05D006485 ORTHO05D006108 3.1e-08 64.3 88 47.7
CSS0004621 Camellia sinensis var. sinensis HOM05D006485 ORTHO05D006108 6.9e-08 63.2 91 47.3
Eucgr.A01582 Eucalyptus grandis HOM05D006485 ORTHO05D006108 9.0e-08 62.8 104 42.3
PSO339G3752 Papaver somniferum HOM05D006485 ORTHO05D006108 9.0e-08 62.8 131 35.1
Atru.chr8.1691 Acer truncatum HOM05D006485 ORTHO05D006108 1.2e-07 62.4 108 38.9
MD09G1267600 Malus domestica HOM05D006485 ORTHO05D006108 1.2e-07 62.4 107 41.1
TWI53G1251 Tripterygium wilfordii HOM05D006485 ORTHO05D006108 1.2e-07 62.4 108 39.8
Peaxi162Scf00500g00067 Petunia axillaris HOM05D006485 ORTHO05D006108 2.6e-07 61.2 86 47.7
CAN.G824.55 Capsicum annuum HOM05D006485 ORTHO05D006108 3.4e-07 60.8 88 45.5
CARHR130920 Cardamine hirsuta HOM05D006485 ORTHO05D006108 3.4e-07 60.8 71 52.1
Sopen09g003560 Solanum pennellii HOM05D006485 ORTHO05D006108 3.4e-07 60.8 100 42.0
Nitab4.5_0000680g0110 Nicotiana tabacum HOM05D006485 ORTHO05D006108 4.4e-07 60.5 92 45.7
Aqoxy1G01006 Aquilegia oxysepala HOM05D006485 ORTHO05D006108 5.8e-07 60.1 130 34.6
SalBow5G2944 Salvia bowleyana HOM05D006485 ORTHO05D006108 7.6e-07 59.7 91 42.9
Potri.015G060600 Populus trichocarpa HOM05D006485 ORTHO05D006108 9.9e-07 59.3 134 35.8
Prupe.7G121500 Prunus persica HOM05D006485 ORTHO05D006108 8.4e-06 56.2 105 37.1


User provided reference genes

Program Settings