Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3A977T52 Lonicera japonica HOM05D007024 ORTHO05D008865 1.9e-121 439.1 216 100.0
Dinv35695 Davidia involucrata HOM05D001458 ORTHO05D006787 2.7e-91 339.0 208 79.3
CSS0004845 Camellia sinensis var. sinensis HOM05D007024 ORTHO05D008865 1.4e-87 326.6 203 77.8
vmacro08688 Vaccinium macrocarpon HOM05D007024 ORTHO05D008865 4.1e-87 325.1 208 76.0
Cfa017486 Carpinus fangiana HOM05D007024 ORTHO05D008865 5.4e-87 324.7 209 76.1
Potri.006G133100 Populus trichocarpa HOM05D007024 ORTHO05D008865 9.1e-87 323.9 210 75.7
Lsat_1_v5_gn_2_109921 Lactuca sativa HOM05D007024 ORTHO05D008865 1.6e-86 323.2 209 76.6
Ciclev10013683m.g Citrus clementina HOM05D007024 ORTHO05D008865 4.5e-86 321.6 200 78.0
CiPaw.09G183100 Carya illinoinensis HOM05D007024 ORTHO05D008865 6.5e-85 317.8 202 75.2
Oeu029107.1 Olea europaea HOM05D007024 ORTHO05D008865 6.5e-85 317.8 207 74.9
GSVIVG01025554001 Vitis vinifera HOM05D007024 ORTHO05D008865 6.5e-85 317.8 209 74.2
CsaV3_4G024400 Cucumis sativus L. HOM05D007024 ORTHO05D008865 8.5e-85 317.4 209 73.2
PSO782G5617 Papaver somniferum HOM05D007024 ORTHO05D008865 1.1e-84 317.0 198 75.3
Lj1g0023744 Lotus japonicus HOM05D007024 ORTHO05D008865 2.5e-84 315.8 209 74.2
PSO063G4670 Papaver somniferum HOM05D007024 ORTHO05D008865 4.2e-84 315.1 198 74.7
Medtr7g100540 Medicago truncatula HOM05D007024 ORTHO05D008865 5.5e-84 314.7 209 74.2
ClCG04G008760 Citrullus lanatus HOM05D007024 ORTHO05D008865 9.4e-84 313.9 209 72.2
HanXRQChr05g0129231 Helianthus annuus HOM05D007024 ORTHO05D008865 9.4e-84 313.9 205 73.7
Sabra06G0104600 Salix brachista HOM05D007024 ORTHO05D008865 9.4e-84 313.9 203 75.4
Atru.chr8.2534 Acer truncatum HOM05D007024 ORTHO05D008865 1.6e-83 313.2 211 74.4
Aqoxy4G03151 Aquilegia oxysepala HOM05D007024 ORTHO05D008865 2.1e-83 312.8 204 73.5
QL07p045588 Quercus lobata HOM05D007024 ORTHO05D008865 3.6e-83 312.0 208 73.1
ECA238G1489 Erigeron canadensis HOM05D007024 ORTHO05D008865 4.7e-83 311.6 209 71.8
Peaxi162Scf01517g00138 Petunia axillaris HOM05D007024 ORTHO05D008865 4.7e-83 311.6 206 74.3
Ca_08817_v3 Cicer arietinum L. HOM05D007024 ORTHO05D008865 6.1e-83 311.2 209 72.7
Duzib106G2062 Durio zibethinus HOM05D007024 ORTHO05D008865 6.1e-83 311.2 209 73.7
Glyma.19G177600 Glycine max HOM05D007024 ORTHO05D008865 6.1e-83 311.2 209 72.2
MD12G1128400 Malus domestica HOM05D007024 ORTHO05D008865 8.0e-83 310.8 207 73.4
Nn2g10613 Nelumbo nucifera HOM05D007024 ORTHO05D008865 8.0e-83 310.8 209 72.7
Phvul.001G173900 Phaseolus vulgaris HOM05D007024 ORTHO05D008865 8.0e-83 310.8 209 72.2
PGR004G2860 Punica granatum HOM05D007024 ORTHO05D008865 1.0e-82 310.5 199 75.4
Gohir.A09G160700 Gossypium hirsutum HOM05D007024 ORTHO05D008865 1.8e-82 309.7 209 72.2
Psat3g045960 Pisum sativum HOM05D007024 ORTHO05D008865 2.3e-82 309.3 211 72.0
Solyc09g007190.3 Solanum lycopersicum HOM05D007024 ORTHO05D008865 2.3e-82 309.3 200 74.0
CAN.G350.48 Capsicum annuum HOM05D007024 ORTHO05D008865 3.0e-82 308.9 208 71.6
Sopen09g002060 Solanum pennellii HOM05D007024 ORTHO05D008865 3.0e-82 308.9 207 72.0
Nitab4.5_0000848g0140 Nicotiana tabacum HOM05D007024 ORTHO05D008865 4.0e-82 308.5 207 72.0
FAN02G0668 Fragaria x ananassa HOM05D007024 ORTHO05D008865 5.2e-82 308.1 197 75.1
Gohir.D09G156400 Gossypium hirsutum HOM05D007024 ORTHO05D008865 5.2e-82 308.1 209 71.8
MBI18_g34970_MAGBIO Magnolia biondii HOM05D007024 ORTHO05D008865 5.2e-82 308.1 209 71.3
VMungo1383G1891 Vigna mungo HOM05D007024 ORTHO05D008865 8.8e-82 307.4 207 72.0
Thecc.05G052000 Theobroma cacao HOM05D007024 ORTHO05D008865 1.2e-81 307.0 209 72.2
TPR.G39424 Trifolium pratense HOM05D007024 ORTHO05D008865 1.2e-81 307.0 206 72.8
Sed0013795 Sechium edule HOM05D007024 ORTHO05D008865 1.5e-81 306.6 209 71.3
arahy.Tifrunner.gnm1.ann1.4131RS Arachis hypogaea HOM05D007024 ORTHO05D008865 2.6e-81 305.8 209 70.3
COL.COLO4_10283 Corchorus olitorius HOM05D007024 ORTHO05D008865 2.6e-81 305.8 206 72.3
FAN14G4602 Fragaria x ananassa HOM05D007024 ORTHO05D007145 2.6e-81 305.8 215 70.7
RcHm_v2.0_Chr3g0468261 Rosa chinensis HOM05D007024 ORTHO05D008865 3.4e-81 305.4 205 72.2
Sc20g0004190 Simmondsia chinensis HOM05D007024 ORTHO05D008865 3.4e-81 305.4 208 70.7
FAN09G4212 Fragaria x ananassa HOM05D007024 ORTHO05D008865 4.4e-81 305.1 197 74.6
Nitab4.5_0010883g0010 Nicotiana tabacum HOM05D007024 ORTHO05D008865 5.7e-81 304.7 206 71.4
THA.LOC104805324 Tarenaya hassleriana HOM05D007024 ORTHO05D008865 1.7e-80 303.1 207 71.0
Lalb_Chr20g0112901 Lupinus albus HOM05D007024 ORTHO05D008865 2.2e-80 302.8 209 70.3
Migut.L01652 Erythranthe guttata HOM05D007024 ORTHO05D008865 2.8e-80 302.4 205 70.2
Gorai.006G177900 Gossypium raimondii HOM05D007024 ORTHO05D008865 2.8e-80 302.4 199 73.4
Cc06_g03440 Coffea canephora HOM05D007024 ORTHO05D008865 4.9e-80 301.6 188 76.1
Eucgr.K03198 Eucalyptus grandis HOM05D007024 ORTHO05D008865 5.4e-79 298.1 207 70.5
Aa31LG5G22570 Aethionema arabicum HOM05D007024 ORTHO05D008865 5.9e-78 294.7 211 66.8
BcaC02g11844 Brassica carinata HOM05D007024 ORTHO05D008865 7.3e-76 287.7 198 69.7
BraA05t19834Z Brassica rapa HOM05D007024 ORTHO05D008865 7.3e-76 287.7 198 69.7
CARHR132350 Cardamine hirsuta HOM05D007024 ORTHO05D008865 9.5e-76 287.3 212 66.0
A05p08660 Brassica napus HOM05D007024 ORTHO05D008865 1.6e-75 286.6 198 69.2
Thhalv10017137m.g Eutrema salsugineum HOM05D007024 ORTHO05D008865 1.6e-75 286.6 199 68.8
unitig_746.g26783 Utricularia gibba HOM05D007024 ORTHO05D008865 1.6e-75 286.6 206 67.5
AL4G33620 Arabidopsis lyrata HOM05D007024 ORTHO05D008865 2.1e-75 286.2 212 65.1
Actinidia05279 Actinidia chinensis HOM05D007024 ORTHO05D008865 2.8e-75 285.8 174 79.9
ATR0582G226 Amborella trichopoda HOM05D007024 ORTHO05D008865 2.8e-75 285.8 202 67.3
C04p10750 Brassica napus HOM05D007024 ORTHO05D008865 3.6e-75 285.4 198 69.2
BolC4t22670H Brassica oleracea HOM05D007024 ORTHO05D008865 3.6e-75 285.4 198 69.2
BcaB02g09297 Brassica carinata HOM05D007024 ORTHO05D008865 4.7e-75 285.0 198 68.7
Sp4g19560 Schrenkiella parvula HOM05D007024 ORTHO05D008865 6.1e-75 284.6 199 67.8
Carub.0004s1915 Capsella rubella HOM05D007024 ORTHO05D008865 1.8e-74 283.1 212 65.1
Os03g0284600 Oryza sativa ssp. japonica HOM05D007024 ORTHO05D008865 1.8e-74 283.1 213 62.9
AT2G37240 Arabidopsis thaliana HOM05D007024 ORTHO05D008865 3.0e-74 282.3 197 68.5
HPP92_003601 Vanilla planifolia HOM05D007024 ORTHO05D008865 5.2e-74 281.6 198 65.7
TAR633G0628 Trochodendron aralioides HOM05D007024 ORTHO05D008865 6.8e-74 281.2 189 72.5
Haze_20672 Corylus avellana HOM05D007024 ORTHO05D008865 2.0e-73 279.6 182 74.7
Zm00001eb013030 Zea mays HOM05D007024 ORTHO05D008865 1.1e-71 273.9 215 61.4
Manes.08G001700 Manihot esculenta HOM05D007024 ORTHO05D008865 1.0e-69 267.3 202 67.8
CDE04G0730 Ceratophyllum demersum HOM05D007024 ORTHO05D008865 6.6e-69 264.6 229 59.0
Hund12062 Selenicereus undatus HOM05D007024 ORTHO05D008865 6.6e-69 264.6 188 67.6
Prupe.6G244000 Prunus persica HOM05D007024 ORTHO05D008865 7.3e-68 261.2 207 64.7
SMO353G0397 Selaginella moellendorffii HOM05D007024 ORTHO05D008865 1.0e-66 257.3 186 61.8
PGSC0003DMG400027897 Solanum tuberosum HOM05D007024 ORTHO05D008865 3.2e-63 245.7 169 72.2
TWI74G0989 Tripterygium wilfordii HOM05D007024 ORTHO05D008865 1.5e-60 236.9 174 67.2
FvH4_6g15080 Fragaria vesca HOM05D007024 ORTHO05D008865 3.3e-60 235.7 159 72.3
SGA_v2.0_scaffold94G28656 Striga asiatica HOM05D007024 ORTHO05D008865 3.3e-60 235.7 167 69.5
Cpa.g.sc45.24 Carica papaya HOM05D007024 ORTHO05D008865 3.6e-59 232.3 150 74.7
CiPaw.09G182200 Carya illinoinensis HOM05D007024 ORTHO05D008865 7.8e-54 214.5 142 73.2
arahy.Tifrunner.gnm1.ann1.GN5EPC Arachis hypogaea HOM05D007024 ORTHO05D008865 1.1e-52 210.7 146 68.5
Ah.15g092040 Amaranthus hybridus HOM05D006367 ORTHO05D007942 1.5e-52 210.3 143 69.9
Mapoly0154s0013 Marchantia polymorpha HOM05D007024 ORTHO05D008865 4.4e-49 198.7 193 50.3
CANSAT80G1842 Cannabis sativa HOM05D007024 ORTHO05D008865 7.1e-47 191.4 148 64.9
AagrBONN_evm.TU.Sc2ySwM_344.3825 Anthoceros agrestis HOM05D007024 ORTHO05D008865 4.6e-46 188.7 159 59.7
Manes.09G070900 Manihot esculenta HOM05D007024 ORTHO05D008865 2.3e-45 186.4 141 68.1
PGSC0003DMG400031729 Solanum tuberosum HOM05D007024 ORTHO05D008865 1.5e-44 183.7 124 72.6
COL.COLO4_27104 Corchorus olitorius HOM05D007024 ORTHO05D008865 1.2e-43 180.6 125 72.0
AUR62040525 Chenopodium quinoa HOM05D006367 ORTHO05D007942 4.7e-43 178.7 114 74.6
CBR_g9017 Chara braunii HOM05D001161 ORTHO05D000497 1.5e-41 173.7 195 43.6
Glyma.03G176900 Glycine max HOM05D007024 ORTHO05D008865 2.1e-35 153.3 115 65.2
MELO3C003072.2 Cucumis melo HOM05D007024 ORTHO05D008865 2.8e-35 152.9 139 59.7
Hma1.2p1_0111F.1_g053680 Hydrangea macrophylla HOM05D007024 ORTHO05D008865 1.8e-29 133.7 80 78.8
SMO353G0028 Selaginella moellendorffii HOM05D007024 ORTHO05D008865 6.7e-29 131.7 111 55.9
SMO171G0126 Selaginella moellendorffii HOM05D007024 ORTHO05D008865 1.6e-27 127.1 146 45.2
SEGI_25621 Sequoiadendron giganteum HOM05D007024 ORTHO05D008865 2.4e-23 113.2 78 64.1
Hma1.2p1_0111F.1_g053690 Hydrangea macrophylla HOM05D007024 ORTHO05D008865 1.3e-21 107.5 53 88.7
EL10Ac7g17324 Beta vulgaris HOM05D006367 ORTHO05D007942 8.1e-19 98.2 74 59.5
PSO170G3322 Papaver somniferum HOM05D004917 ORTHO05D005954 6.9e-18 95.1 203 28.1
Pp3c27_7100 Physcomitrium patens HOM05D004917 ORTHO05D005954 6.9e-18 95.1 211 30.8
Gohir.D10G098900 Gossypium hirsutum HOM05D004917 ORTHO05D005954 2.0e-17 93.6 197 30.5
Gohir.A10G089200 Gossypium hirsutum HOM05D004917 ORTHO05D005954 4.5e-17 92.4 197 29.9
Gorai.011G108500 Gossypium raimondii HOM05D004917 ORTHO05D005954 1.3e-16 90.9 195 30.3
PSO017G2694 Papaver somniferum HOM05D004917 ORTHO05D005954 1.1e-15 87.8 201 27.4
MD02G1189600 Malus domestica HOM05D004917 ORTHO05D005954 6.0e-14 82.0 195 29.2
RcHm_v2.0_Chr2g0108771 Rosa chinensis HOM05D004917 ORTHO05D005954 1.8e-13 80.5 190 30.5
AagrBONN_evm.TU.Sc2ySwM_368.1530 Anthoceros agrestis HOM05D004917 ORTHO05D005954 2.3e-13 80.1 182 29.1
Zm00001eb110150 Zea mays HOM05D007024 ORTHO05D008865 1.1e-12 77.8 56 62.5
CDE07G1737 Ceratophyllum demersum HOM05D007024 ORTHO05D008865 1.3e-11 74.3 69 56.5
EL10Ac7g17323 Beta vulgaris HOM05D007024 ORTHO05D008865 1.6e-11 73.9 40 80.0
CiPaw.09G182700 Carya illinoinensis HOM05D007024 ORTHO05D008865 4.8e-11 72.4 45 71.1
BolC6t37885H Brassica oleracea HOM05D007024 ORTHO05D008865 3.4e-09 66.2 40 75.0
BcaC08g45103 Brassica carinata HOM05D007024 ORTHO05D008865 4.5e-09 65.9 40 75.0
C06p27120 Brassica napus HOM05D007024 ORTHO05D008865 4.5e-09 65.9 40 75.0
CiPaw.06G095800 Carya illinoinensis HOM05D006847 ORTHO05D008685 4.5e-09 65.9 183 29.0
Nitab4.5_0000259g0050 Nicotiana tabacum HOM05D006847 ORTHO05D008685 1.7e-08 63.9 183 26.8
Gorai.005G148200 Gossypium raimondii HOM05D006847 ORTHO05D008685 2.2e-08 63.5 183 26.2
Nitab4.5_0002309g0040 Nicotiana tabacum HOM05D006847 ORTHO05D008685 2.2e-08 63.5 183 26.8
Sopen05g006440 Solanum pennellii HOM05D006847 ORTHO05D008685 2.9e-08 63.2 175 25.7
CAN.G869.31 Capsicum annuum HOM05D006847 ORTHO05D008685 3.8e-08 62.8 174 27.6
Gohir.A03G107200 Gossypium hirsutum HOM05D006847 ORTHO05D008685 3.8e-08 62.8 182 25.8
Gohir.D02G132300 Gossypium hirsutum HOM05D006847 ORTHO05D008685 5.0e-08 62.4 183 25.1
PGSC0003DMG400019650 Solanum tuberosum HOM05D006847 ORTHO05D008685 6.5e-08 62.0 174 25.9
Duzib268G0361 Durio zibethinus HOM05D006847 ORTHO05D008685 8.5e-08 61.6 183 25.7
PGSC0003DMG400001803 Solanum tuberosum HOM05D006847 ORTHO05D008685 8.5e-08 61.6 183 26.8
Cfa008830 Carpinus fangiana HOM05D006847 ORTHO05D008685 1.1e-07 61.2 183 25.7
Sopen01g032850 Solanum pennellii HOM05D006847 ORTHO05D008685 1.1e-07 61.2 183 26.2
TAR374G0132 Trochodendron aralioides HOM05D006847 ORTHO05D008685 1.1e-07 61.2 183 24.6
COL.COLO4_27774 Corchorus olitorius HOM05D006847 ORTHO05D008685 1.4e-07 60.8 183 24.6
Pp3c27_4530 Physcomitrium patens HOM05D006847 ORTHO05D008685 2.5e-07 60.1 175 23.4
Lj6C772T8 Lonicera japonica HOM05D006847 ORTHO05D008685 3.2e-07 59.7 183 25.1
Actinidia24040 Actinidia chinensis HOM05D006847 ORTHO05D008685 4.2e-07 59.3 175 23.4
Actinidia31921 Actinidia chinensis HOM05D006847 ORTHO05D008685 4.2e-07 59.3 182 25.3
Migut.N00803 Erythranthe guttata HOM05D006847 ORTHO05D008685 4.2e-07 59.3 183 26.2
Thecc.02G320200 Theobroma cacao HOM05D006847 ORTHO05D008685 4.2e-07 59.3 183 25.7
TPR.G20006 Trifolium pratense HOM05D006847 ORTHO05D008685 4.2e-07 59.3 183 24.0
Actinidia19898 Actinidia chinensis HOM05D006847 ORTHO05D008685 5.5e-07 58.9 183 24.0
Dinv33999 Davidia involucrata HOM05D006847 ORTHO05D008685 5.5e-07 58.9 183 25.1
Lj3C1026T6 Lonicera japonica HOM05D006847 ORTHO05D008685 5.5e-07 58.9 178 24.7
Potri.008G113000 Populus trichocarpa HOM05D006847 ORTHO05D008685 5.5e-07 58.9 183 26.8
CANSAT64G2316 Cannabis sativa HOM05D006847 ORTHO05D008685 9.3e-07 58.2 182 25.8
DCAR_023729 Daucus carota HOM05D006847 ORTHO05D008685 9.3e-07 58.2 175 24.6
GSVIVG01010124001 Vitis vinifera HOM05D006847 ORTHO05D008685 9.3e-07 58.2 183 25.1
Aqoxy3G03766 Aquilegia oxysepala HOM05D006847 ORTHO05D008685 1.2e-06 57.8 183 24.0
Potri.010G136300 Populus trichocarpa HOM05D006847 ORTHO05D008685 1.2e-06 57.8 182 24.7
Medtr0328s0040 Medicago truncatula HOM05D006847 ORTHO05D008685 1.6e-06 57.4 183 24.6
Oeu021813.1 Olea europaea HOM05D006847 ORTHO05D008685 1.6e-06 57.4 182 23.6
HanXRQChr08g0215061 Helianthus annuus HOM05D006847 ORTHO05D008685 2.1e-06 57.0 183 24.0
MD13G1054900 Malus domestica HOM05D006847 ORTHO05D008685 2.1e-06 57.0 183 26.2
MD16G1053800 Malus domestica HOM05D006847 ORTHO05D008685 2.7e-06 56.6 183 26.2
Lsat_1_v5_gn_8_36700 Lactuca sativa HOM05D006847 ORTHO05D008685 3.6e-06 56.2 182 24.2
Hma1.2p1_1348F.1_g277280 Hydrangea macrophylla HOM05D006847 ORTHO05D008685 4.6e-06 55.8 182 24.7
Pp3c6_17060 Physcomitrium patens HOM05D006847 ORTHO05D008685 4.6e-06 55.8 184 24.5
ATR0691G250 Amborella trichopoda HOM05D006847 ORTHO05D008685 6.1e-06 55.5 174 26.4
AagrBONN_evm.TU.Sc2ySwM_368.2780 Anthoceros agrestis HOM05D006847 ORTHO05D008685 6.1e-06 55.5 186 23.7
Nn4g23575 Nelumbo nucifera HOM05D006847 ORTHO05D008685 7.9e-06 55.1 172 26.7


User provided reference genes

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