Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3A975T70 Lonicera japonica HOM05D004973 ORTHO05D006119 2.7e-125 452.2 264 100.0
Dinv37236 Davidia involucrata HOM05D004973 ORTHO05D006119 1.2e-51 207.6 270 51.5
Dinv35683 Davidia involucrata HOM05D004973 ORTHO05D006119 2.2e-50 203.4 268 54.9
Hma1.2p1_0111F.1_g053560 Hydrangea macrophylla HOM05D004973 ORTHO05D006119 1.4e-44 184.1 266 47.0
CSS0008181 Camellia sinensis var. sinensis HOM05D004973 ORTHO05D006119 4.0e-44 182.6 271 43.5
CSS0000366 Camellia sinensis var. sinensis HOM05D004973 ORTHO05D006119 2.0e-43 180.3 271 43.5
CSS0037973 Camellia sinensis var. sinensis HOM05D004973 ORTHO05D006119 2.6e-43 179.9 279 48.7
Nitab4.5_0000202g0430 Nicotiana tabacum HOM05D004973 ORTHO05D006119 3.6e-37 159.5 290 43.1
QL07p045858 Quercus lobata HOM05D004973 ORTHO05D006119 6.9e-36 155.2 273 42.5
Nitab4.5_0016310g0010 Nicotiana tabacum HOM05D004973 ORTHO05D006119 2.9e-34 149.8 293 41.3
Ciclev10012401m.g Citrus clementina HOM05D004973 ORTHO05D006119 9.3e-33 144.8 262 41.2
DCAR_017742 Daucus carota HOM05D004973 ORTHO05D006119 7.9e-32 141.7 281 39.9
Cc06_g03330 Coffea canephora HOM05D004973 ORTHO05D006119 3.0e-31 139.8 300 39.7
GSVIVG01025573001 Vitis vinifera HOM05D004973 ORTHO05D009107 3.0e-31 139.8 266 40.6
Haze_20682 Corylus avellana HOM05D004973 ORTHO05D006119 5.6e-30 135.6 268 41.0
CiPaw.09G185000 Carya illinoinensis HOM05D004973 ORTHO05D006119 7.4e-30 135.2 267 40.8
PGSC0003DMG400011051 Solanum tuberosum HOM05D004973 ORTHO05D006119 3.6e-29 132.9 264 39.4
Nitab4.5_0000643g0210 Nicotiana tabacum HOM05D004973 ORTHO05D006119 2.4e-28 130.2 270 40.0
MSTRG.10290 Avicennia marina HOM05D004973 ORTHO05D006119 3.1e-28 129.8 317 40.1
Oeu060067.1 Olea europaea HOM05D004973 ORTHO05D006119 3.1e-28 129.8 303 37.6
Sopen10g033860 Solanum pennellii HOM05D004973 ORTHO05D006119 6.9e-28 128.6 265 40.0
Manes.08G000800 Manihot esculenta HOM05D004973 ORTHO05D006119 3.4e-27 126.3 274 36.5
HanXRQChr07g0195961 Helianthus annuus HOM05D004973 ORTHO05D006119 5.8e-27 125.6 290 36.6
Gohir.A04G077600 Gossypium hirsutum HOM05D004973 ORTHO05D006119 1.3e-26 124.4 264 45.1
Solyc10g084420.2 Solanum lycopersicum HOM05D004973 ORTHO05D006119 1.3e-26 124.4 263 37.6
Peaxi162Scf00472g00079 Petunia axillaris HOM05D004973 ORTHO05D006119 1.7e-26 124.0 262 37.4
Migut.L01647 Erythranthe guttata HOM05D004973 ORTHO05D006119 2.9e-26 123.2 271 37.6
Thecc.05G050500 Theobroma cacao HOM05D004973 ORTHO05D006119 6.4e-26 122.1 281 36.7
Oeu029113.1 Olea europaea HOM05D004973 ORTHO05D006119 1.1e-25 121.3 260 37.3
Prupe.6G245100 Prunus persica HOM05D004973 ORTHO05D009107 1.1e-25 121.3 281 38.1
Gohir.D04G116800 Gossypium hirsutum HOM05D004973 ORTHO05D006119 1.4e-25 120.9 264 42.8
Gorai.009G421700 Gossypium raimondii HOM05D004973 ORTHO05D006119 3.2e-25 119.8 264 42.4
Potri.006G216300 Populus trichocarpa HOM05D004973 ORTHO05D006119 9.3e-25 118.2 284 39.1
FAN14G1622 Fragaria x ananassa HOM05D004973 ORTHO05D006119 1.2e-24 117.9 279 38.0
Sabra06G0166700 Salix brachista HOM05D004973 ORTHO05D006119 1.2e-24 117.9 284 37.3
Actinidia19731 Actinidia chinensis HOM05D004973 ORTHO05D006119 3.5e-24 116.3 271 37.6
Lsat_1_v5_gn_2_110141 Lactuca sativa HOM05D004973 ORTHO05D006119 6.0e-24 115.5 290 39.0
FAN09G0990 Fragaria x ananassa HOM05D004973 ORTHO05D006119 1.0e-23 114.8 281 37.4
HanXRQChr14g0453421 Helianthus annuus HOM05D004973 ORTHO05D006119 1.0e-23 114.8 255 42.0
vmacro20083 Vaccinium macrocarpon HOM05D004973 ORTHO05D006119 1.0e-23 114.8 258 40.7
CiPaw.10G138900 Carya illinoinensis HOM05D004973 ORTHO05D006119 1.3e-23 114.4 321 33.3
FAN05G3543 Fragaria x ananassa HOM05D004973 ORTHO05D006119 2.3e-23 113.6 279 37.3
MSTRG.26739 Avicennia marina HOM05D004973 ORTHO05D006119 6.7e-23 112.1 312 33.3
ECA238G2925 Erigeron canadensis HOM05D004973 ORTHO05D006119 1.5e-22 110.9 275 35.3
COL.COLO4_10304 Corchorus olitorius HOM05D004973 ORTHO05D006119 1.9e-22 110.5 267 37.5
Migut.J00395 Erythranthe guttata HOM05D004973 ORTHO05D006119 2.5e-22 110.2 265 34.3
SGA_v2.0_scaffold35G14182 Striga asiatica HOM05D004973 ORTHO05D006119 4.3e-22 109.4 291 36.4
Gohir.A09G160200 Gossypium hirsutum HOM05D004973 ORTHO05D006119 1.6e-21 107.5 266 36.5
Gorai.006G177300 Gossypium raimondii HOM05D004973 ORTHO05D006119 2.1e-21 107.1 270 35.9
Peaxi162Scf00597g00824 Petunia axillaris HOM05D004973 ORTHO05D006119 2.8e-21 106.7 261 36.0
Eucgr.A01206 Eucalyptus grandis HOM05D004973 ORTHO05D006119 3.7e-21 106.3 268 36.6
CANSAT80G1895 Cannabis sativa HOM05D004973 ORTHO05D006119 1.8e-20 104.0 267 35.6
Lj2A104T80 Lonicera japonica HOM05D004973 ORTHO05D006119 4.0e-20 102.8 200 43.5
Cpa.g.sc114.29 Carica papaya HOM05D004973 ORTHO05D006119 6.9e-20 102.1 262 36.6
Manes.09G071500 Manihot esculenta HOM05D004973 ORTHO05D006119 2.6e-19 100.1 264 35.2
DCAR_014954 Daucus carota HOM05D000267 ORTHO05D000298 7.6e-19 98.6 285 34.0
CAN.G867.2 Capsicum annuum HOM05D004973 ORTHO05D006119 1.3e-18 97.8 226 36.7
TAR623G0749 Trochodendron aralioides HOM05D004973 ORTHO05D006119 1.7e-18 97.4 174 39.1
Nitab4.5_0007045g0010 Nicotiana tabacum HOM05D004973 ORTHO05D006119 3.8e-18 96.3 231 36.8
RhsimUnG0120800 Rhododendron simsii HOM05D004973 ORTHO05D006119 3.8e-18 96.3 234 36.8
Potri.016G082700 Populus trichocarpa HOM05D004973 ORTHO05D006119 8.4e-18 95.1 241 35.3
Lj5g0023317 Lotus japonicus HOM05D004973 ORTHO05D006119 1.4e-17 94.4 267 35.2
FvH4_6g14910 Fragaria vesca HOM05D004973 ORTHO05D006119 5.5e-17 92.4 164 39.6
MD12G1129800 Malus domestica HOM05D004973 ORTHO05D006119 5.5e-17 92.4 267 36.3
Glyma.10G047400 Glycine max HOM05D004973 ORTHO05D006119 7.1e-17 92.0 265 35.5
arahy.Tifrunner.gnm1.ann1.P2DQEA Arachis hypogaea HOM05D004973 ORTHO05D006119 3.5e-16 89.7 257 29.2
CAN.G867.6 Capsicum annuum HOM05D004973 ORTHO05D006119 3.5e-16 89.7 262 35.9
FAN02G2240 Fragaria x ananassa HOM05D004973 ORTHO05D006119 3.5e-16 89.7 214 36.9
MSTRG.19121 Avicennia marina HOM05D004973 ORTHO05D006119 6.0e-16 89.0 149 40.9
arahy.Tifrunner.gnm1.ann1.C8BSPY Arachis hypogaea HOM05D004973 ORTHO05D006119 7.9e-16 88.6 257 29.6
Nn2g12943 Nelumbo nucifera HOM05D004973 ORTHO05D006119 1.0e-15 88.2 281 31.3
Nn2g10587 Nelumbo nucifera HOM05D004973 ORTHO05D006119 1.3e-15 87.8 90 53.3
SalBow4G1465 Salvia bowleyana HOM05D004973 ORTHO05D006119 1.3e-15 87.8 320 30.6
Medtr1g067220 Medicago truncatula HOM05D004973 ORTHO05D006119 2.3e-15 87.0 259 32.4
Sc01g0003720 Simmondsia chinensis HOM05D004973 ORTHO05D006119 3.0e-15 86.7 268 33.6
Atru.chr8.2512 Acer truncatum HOM05D004973 ORTHO05D006119 5.1e-15 85.9 78 61.5
Phvul.007G161600 Phaseolus vulgaris HOM05D004973 ORTHO05D006119 6.7e-15 85.5 257 38.5
RcHm_v2.0_Chr3g0468111 Rosa chinensis HOM05D004973 ORTHO05D006119 1.5e-14 84.3 220 39.5
ClCG04G008700 Citrullus lanatus HOM05D004973 ORTHO05D006119 1.9e-14 84.0 78 59.0
PSO384G3176 Papaver somniferum HOM05D004973 ORTHO05D006119 3.3e-14 83.2 88 54.5
Gohir.D09G155800 Gossypium hirsutum HOM05D004973 ORTHO05D006119 4.3e-14 82.8 79 59.5
CsaV3_4G024460 Cucumis sativus L. HOM05D004973 ORTHO05D006119 1.3e-13 81.3 67 62.7
Hund12070 Selenicereus undatus HOM05D004973 ORTHO05D006119 1.6e-13 80.9 270 32.6
VMungo0720G0246 Vigna mungo HOM05D004973 ORTHO05D006119 2.1e-13 80.5 284 31.7
TWI53G0396 Tripterygium wilfordii HOM05D004973 ORTHO05D006119 6.3e-13 79.0 71 63.4
EL10Ac7g17266 Beta vulgaris HOM05D004973 ORTHO05D006119 8.2e-13 78.6 266 30.5
Lalb_Chr06g0171201 Lupinus albus HOM05D004973 ORTHO05D006119 8.2e-13 78.6 83 54.2
THA.LOC104823441 Tarenaya hassleriana HOM05D004973 ORTHO05D006119 1.8e-12 77.4 87 54.0
Glyma.03G176000 Glycine max HOM05D004973 ORTHO05D006119 2.4e-12 77.0 70 58.6
BcaNung06611 Brassica carinata HOM05D004973 ORTHO05D006119 4.1e-12 76.3 90 55.6
C04p65800 Brassica napus HOM05D004973 ORTHO05D006119 4.1e-12 76.3 90 55.6
BolC4t28082H Brassica oleracea HOM05D004973 ORTHO05D006119 4.1e-12 76.3 90 55.6
Os03g0283400 Oryza sativa ssp. japonica HOM05D004973 ORTHO05D006119 4.1e-12 76.3 233 31.8
AL4G33680 Arabidopsis lyrata HOM05D004973 ORTHO05D006119 5.3e-12 75.9 78 57.7
MBI05_g16176_MAGBIO Magnolia biondii HOM05D004973 ORTHO05D006119 5.3e-12 75.9 62 64.5
MELO3C003079.2 Cucumis melo HOM05D004973 ORTHO05D006119 6.9e-12 75.5 268 29.9
unitig_60.g25816 Utricularia gibba HOM05D004973 ORTHO05D006119 9.0e-12 75.1 94 52.1
MD04G1111000 Malus domestica HOM05D004973 ORTHO05D006119 1.5e-11 74.3 71 57.7
Zm00001eb012960 Zea mays HOM05D004973 ORTHO05D006119 1.5e-11 74.3 72 56.9
Sp4g19620 Schrenkiella parvula HOM05D004973 ORTHO05D006119 2.6e-11 73.6 87 52.9
A04p28480 Brassica napus HOM05D004973 ORTHO05D006119 3.4e-11 73.2 87 51.7
C03p24200 Brassica napus HOM05D000861 ORTHO05D001799 4.5e-11 72.8 66 60.6
BolC3t14814H Brassica oleracea HOM05D004973 ORTHO05D006119 4.5e-11 72.8 66 60.6
BraA03t11302Z Brassica rapa HOM05D000861 ORTHO05D001799 4.5e-11 72.8 66 60.6
Sed0023997 Sechium edule HOM05D004973 ORTHO05D006119 5.9e-11 72.4 77 57.1
HPP92_001696 Vanilla planifolia HOM05D004973 ORTHO05D006119 5.9e-11 72.4 81 50.6
BcaNung06612 Brassica carinata HOM05D004973 ORTHO05D006119 7.6e-11 72.0 87 51.7
AT2G37300 Arabidopsis thaliana HOM05D004973 ORTHO05D006119 1.0e-10 71.6 87 55.2
TPR.G35656 Trifolium pratense HOM05D004973 ORTHO05D006119 1.0e-10 71.6 66 57.6
A03p20600 Brassica napus HOM05D000861 ORTHO05D001799 1.3e-10 71.2 79 51.9
BraA04t18326Z Brassica rapa HOM05D004973 ORTHO05D006119 1.7e-10 70.9 87 51.7
CAN.G608.34 Capsicum annuum HOM05D004973 ORTHO05D006119 1.7e-10 70.9 240 31.7
Thhalv10017275m.g Eutrema salsugineum HOM05D004973 ORTHO05D006119 1.7e-10 70.9 86 52.3
Aqoxy4G03126 Aquilegia oxysepala HOM05D004973 ORTHO05D006119 2.9e-10 70.1 260 30.4
Carub.0004s1921 Capsella rubella HOM05D004973 ORTHO05D006119 2.9e-10 70.1 64 60.9
CDE04G2944 Ceratophyllum demersum HOM05D005673 ORTHO05D007081 5.0e-10 69.3 271 28.0
PGR004G2597 Punica granatum HOM05D004973 ORTHO05D006119 5.0e-10 69.3 79 46.8
Psat6g069760 Pisum sativum HOM05D004973 ORTHO05D006119 6.5e-10 68.9 63 57.1
Glyma.19G176500 Glycine max HOM05D004973 ORTHO05D006119 8.5e-10 68.6 211 30.8
Lalb_Chr02g0153461 Lupinus albus HOM05D004973 ORTHO05D006119 1.9e-09 67.4 88 48.9
A05p08610 Brassica napus HOM05D004973 ORTHO05D006119 2.5e-09 67.0 62 59.7
MELO3C009296.2 Cucumis melo HOM05D004973 ORTHO05D006119 2.5e-09 67.0 252 29.8
CsaV3_3G035290 Cucumis sativus L. HOM05D004973 ORTHO05D006119 2.5e-09 67.0 251 30.7
BcaC02g07519 Brassica carinata HOM05D004973 ORTHO05D006119 7.2e-09 65.5 62 59.7
C04p10700 Brassica napus HOM05D004973 ORTHO05D006119 9.3e-09 65.1 62 59.7
Eucgr.K03187 Eucalyptus grandis HOM05D004973 ORTHO05D006119 1.2e-08 64.7 263 29.7
PGR004G0295 Punica granatum HOM05D004973 ORTHO05D006119 1.2e-08 64.7 260 36.2
THA.LOC104805339 Tarenaya hassleriana HOM05D004973 ORTHO05D006119 1.6e-08 64.3 72 54.2
VMungo1383G2298 Vigna mungo HOM05D004973 ORTHO05D006119 2.7e-08 63.5 62 54.8
arahy.Tifrunner.gnm1.ann1.X85SHR Arachis hypogaea HOM05D004973 ORTHO05D006119 7.9e-08 62.0 78 43.6
PGSC0003DMG400027309 Solanum tuberosum HOM05D005926 ORTHO05D007001 1.3e-07 61.2 84 46.4
CAN.G1550.12 Capsicum annuum HOM05D005926 ORTHO05D007001 1.8e-07 60.8 85 44.7
arahy.Tifrunner.gnm1.ann1.4HMS3J Arachis hypogaea HOM05D004973 ORTHO05D006119 2.3e-07 60.5 78 42.3
Solyc11g007510.2 Solanum lycopersicum HOM05D005926 ORTHO05D007001 3.9e-07 59.7 84 46.4
Glyma.20G187800 Glycine max HOM05D005926 ORTHO05D007001 6.7e-07 58.9 77 48.1
PGSC0003DMG400023487 Solanum tuberosum HOM05D005926 ORTHO05D007001 8.7e-07 58.5 85 42.4
Solyc05g055360.4 Solanum lycopersicum HOM05D005926 ORTHO05D007001 1.5e-06 57.8 85 42.4
Rhsim03G0105700 Rhododendron simsii HOM05D005926 ORTHO05D007001 1.9e-06 57.4 81 43.2
Sopen11g003350 Solanum pennellii HOM05D005926 ORTHO05D007001 1.9e-06 57.4 84 45.2
Atru.chr12.975 Acer truncatum HOM05D005926 ORTHO05D007001 2.5e-06 57.0 85 44.7
ATR0594G102 Amborella trichopoda HOM05D004973 ORTHO05D006119 2.5e-06 57.0 78 43.6
ClCG10G020720 Citrullus lanatus HOM05D004973 ORTHO05D006119 2.5e-06 57.0 264 29.5
Dinv30648 Davidia involucrata HOM05D005926 ORTHO05D007001 2.5e-06 57.0 77 46.8
Glyma.10G202600 Glycine max HOM05D005926 ORTHO05D007001 2.5e-06 57.0 79 45.6
Cc02_g10060 Coffea canephora HOM05D005926 ORTHO05D007001 3.3e-06 56.6 86 44.2
Nn2g14047 Nelumbo nucifera HOM05D005926 ORTHO05D007001 4.3e-06 56.2 77 45.5
Phvul.007G104500 Phaseolus vulgaris HOM05D005926 ORTHO05D007001 4.3e-06 56.2 77 45.5
SGA_v2.0_scaffold62G21348 Striga asiatica HOM05D005926 ORTHO05D007001 4.3e-06 56.2 84 42.9
HPP92_002057 Vanilla planifolia HOM05D005926 ORTHO05D007001 4.3e-06 56.2 82 42.7
Actinidia18581 Actinidia chinensis HOM05D005926 ORTHO05D007001 5.7e-06 55.8 82 40.2
Ciclev10030805m.g Citrus clementina HOM05D005926 ORTHO05D007001 5.7e-06 55.8 82 41.5
Lj2C28T9 Lonicera japonica HOM05D005926 ORTHO05D007001 5.7e-06 55.8 82 42.7
Sed0025194 Sechium edule HOM05D004973 ORTHO05D006119 5.7e-06 55.8 78 44.9
COL.COLO4_06813 Corchorus olitorius HOM05D005926 ORTHO05D007001 7.4e-06 55.5 82 41.5
RhsimUnG0120900 Rhododendron simsii HOM05D004973 ORTHO05D006119 7.4e-06 55.5 38 68.4
Sopen05g033810 Solanum pennellii HOM05D005926 ORTHO05D007001 7.4e-06 55.5 85 41.2
Peaxi162Scf00004g00119 Petunia axillaris HOM05D005926 ORTHO05D007001 9.7e-06 55.1 86 39.5


User provided reference genes

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