Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3A964T57 Lonicera japonica HOM05D005845 ORTHO05D007067 1.2e-59 233.0 122 100.0
Hma1.2p1_0936F.1_g238990 Hydrangea macrophylla HOM05D005845 ORTHO05D007067 5.4e-36 154.5 124 69.4
QL07p030115 Quercus lobata HOM05D005845 ORTHO05D007067 1.2e-35 153.3 121 70.2
QL07p030897 Quercus lobata HOM05D005845 ORTHO05D007067 1.2e-35 153.3 121 70.2
Rhsim05G0194900 Rhododendron simsii HOM05D005845 ORTHO05D007067 1.7e-34 149.4 115 67.0
CSS0047206 Camellia sinensis var. sinensis HOM05D005845 ORTHO05D007067 6.6e-34 147.5 116 72.4
TAR633G1228 Trochodendron aralioides HOM05D005845 ORTHO05D007067 1.1e-33 146.7 125 68.0
Haze_20829 Corylus avellana HOM05D005320 ORTHO05D007922 1.5e-33 146.4 120 66.7
vmacro20178 Vaccinium macrocarpon HOM05D005845 ORTHO05D007067 1.5e-33 146.4 114 68.4
Prupe.6G259200 Prunus persica HOM05D005845 ORTHO05D007067 1.9e-33 146.0 120 66.7
DCAR_028759 Daucus carota HOM05D005845 ORTHO05D007067 3.3e-33 145.2 123 66.7
CiPaw.10G147000 Carya illinoinensis HOM05D005845 ORTHO05D007067 5.6e-33 144.4 123 63.4
Ciclev10013078m.g Citrus clementina HOM05D005845 ORTHO05D007067 1.6e-32 142.9 123 61.0
Eucgr.K03081 Eucalyptus grandis HOM05D005845 ORTHO05D007067 1.6e-32 142.9 96 72.9
Gorai.009G405900 Gossypium raimondii HOM05D005845 ORTHO05D007067 2.8e-32 142.1 122 65.6
TAR633G1058 Trochodendron aralioides HOM05D005845 ORTHO05D007067 2.8e-32 142.1 123 65.0
GSVIVG01034129001 Vitis vinifera HOM05D005845 ORTHO05D007067 2.8e-32 142.1 126 65.1
Atru.chr8.2014 Acer truncatum HOM05D005320 ORTHO05D007922 6.2e-32 141.0 124 62.9
Potri.006G088200 Populus trichocarpa HOM05D005845 ORTHO05D007067 6.2e-32 141.0 122 62.3
TWI77G0787 Tripterygium wilfordii HOM05D005845 ORTHO05D007067 6.2e-32 141.0 124 62.9
Gohir.D07G011900 Gossypium hirsutum HOM05D005845 ORTHO05D007067 8.1e-32 140.6 122 63.9
Manes.09G092274 Manihot esculenta HOM05D005845 ORTHO05D007067 8.1e-32 140.6 118 61.0
ClCG10G021330 Citrullus lanatus HOM05D005845 ORTHO05D007067 1.4e-31 139.8 119 62.2
Gorai.001G012600 Gossypium raimondii HOM05D005845 ORTHO05D007067 1.4e-31 139.8 122 63.9
Gohir.D04G102600 Gossypium hirsutum HOM05D005845 ORTHO05D007067 1.8e-31 139.4 122 64.8
Psat3g137040 Pisum sativum HOM05D005845 ORTHO05D007067 1.8e-31 139.4 120 65.0
Cpa.g.sc3458.2 Carica papaya HOM05D005845 ORTHO05D007067 4.0e-31 138.3 99 70.7
Nn2g13425 Nelumbo nucifera HOM05D005845 ORTHO05D007067 4.0e-31 138.3 111 64.9
Eucgr.K03092 Eucalyptus grandis HOM05D005845 ORTHO05D007067 5.2e-31 137.9 91 73.6
Glyma.07G135300 Glycine max HOM05D005845 ORTHO05D007067 5.2e-31 137.9 122 63.1
Lalb_Chr03g0042411 Lupinus albus HOM05D005845 ORTHO05D007067 5.2e-31 137.9 105 71.4
ECA233G0482 Erigeron canadensis HOM05D005845 ORTHO05D007067 6.8e-31 137.5 115 62.6
FAN02G1947 Fragaria x ananassa HOM05D005845 ORTHO05D007067 6.8e-31 137.5 122 61.5
Gohir.A07G012100 Gossypium hirsutum HOM05D005845 ORTHO05D007067 6.8e-31 137.5 122 63.1
Lsat_1_v5_gn_6_22520 Lactuca sativa HOM05D005845 ORTHO05D007067 6.8e-31 137.5 100 67.0
MD04G1132800 Malus domestica HOM05D005845 ORTHO05D007067 8.9e-31 137.1 122 63.9
PSO339G6396 Papaver somniferum HOM05D005845 ORTHO05D007067 1.2e-30 136.7 119 62.2
FvH4_6g13240 Fragaria vesca HOM05D005845 ORTHO05D007067 1.5e-30 136.3 122 60.7
FAN14G4222 Fragaria x ananassa HOM05D005845 ORTHO05D007067 1.5e-30 136.3 122 60.7
HanXRQChr02g0050481 Helianthus annuus HOM05D005845 ORTHO05D007067 1.5e-30 136.3 95 72.6
Nitab4.5_0003394g0030 Nicotiana tabacum HOM05D005845 ORTHO05D007067 2.0e-30 136.0 119 63.0
PSO513G0176 Papaver somniferum HOM05D005845 ORTHO05D007067 2.0e-30 136.0 122 60.7
Sed0011119 Sechium edule HOM05D005845 ORTHO05D007067 2.0e-30 136.0 119 59.7
Cc06_g02340 Coffea canephora HOM05D005845 ORTHO05D007067 2.6e-30 135.6 122 59.8
Lj1g0012131 Lotus japonicus HOM05D005845 ORTHO05D007067 2.6e-30 135.6 123 65.9
Medtr7g062970 Medicago truncatula HOM05D005845 ORTHO05D007067 2.6e-30 135.6 120 61.7
PGR004G0892 Punica granatum HOM05D005845 ORTHO05D007067 2.6e-30 135.6 125 60.8
RcHm_v2.0_Chr3g0466071 Rosa chinensis HOM05D005845 ORTHO05D007067 2.6e-30 135.6 122 61.5
COL.COLO4_14759 Corchorus olitorius HOM05D005845 ORTHO05D007067 4.4e-30 134.8 122 65.6
MD12G1145500 Malus domestica HOM05D005845 ORTHO05D007067 4.4e-30 134.8 122 63.9
Nitab4.5_0000705g0030 Nicotiana tabacum HOM05D005845 ORTHO05D007067 5.8e-30 134.4 119 62.2
Duzib106G0947 Durio zibethinus HOM05D005845 ORTHO05D007067 7.6e-30 134.0 118 61.0
MBI05_g35632_MAGBIO Magnolia biondii HOM05D005845 ORTHO05D007067 7.6e-30 134.0 113 62.8
VMungo1383G2075 Vigna mungo HOM05D005845 ORTHO05D007067 7.6e-30 134.0 122 61.5
CAN.G597.2 Capsicum annuum HOM05D005845 ORTHO05D007067 9.9e-30 133.7 115 64.3
TWI74G0153 Tripterygium wilfordii HOM05D005845 ORTHO05D007067 9.9e-30 133.7 119 60.5
arahy.Tifrunner.gnm1.ann1.CX8U58 Arachis hypogaea HOM05D005845 ORTHO05D007067 1.3e-29 133.3 100 67.0
Ca_07339_v3 Cicer arietinum L. HOM05D005845 ORTHO05D007067 1.7e-29 132.9 124 63.7
arahy.Tifrunner.gnm1.ann1.1Q4DHH Arachis hypogaea HOM05D005845 ORTHO05D007067 2.2e-29 132.5 99 68.7
Gohir.A04G065200 Gossypium hirsutum HOM05D005845 ORTHO05D007067 2.2e-29 132.5 125 62.4
Peaxi162Scf00527g00733 Petunia axillaris HOM05D005845 ORTHO05D007067 2.2e-29 132.5 120 60.8
Sabra06G0067200 Salix brachista HOM05D000102 ORTHO05D004225 2.2e-29 132.5 115 62.6
Sc01g0004490 Simmondsia chinensis HOM05D005845 ORTHO05D007067 2.2e-29 132.5 80 77.5
CsaV3_3G034730 Cucumis sativus L. HOM05D005845 ORTHO05D007067 2.9e-29 132.1 121 62.0
Rhsim04G0158900 Rhododendron simsii HOM05D005845 ORTHO05D007067 2.9e-29 132.1 133 57.9
THA.LOC104816255 Tarenaya hassleriana HOM05D005845 ORTHO05D007067 2.9e-29 132.1 125 60.8
arahy.Tifrunner.gnm1.ann1.1BNP0N Arachis hypogaea HOM05D005845 ORTHO05D007067 3.8e-29 131.7 120 61.7
arahy.Tifrunner.gnm1.ann1.D19TT3 Arachis hypogaea HOM05D005845 ORTHO05D007067 4.9e-29 131.3 99 67.7
Phvul.008G118000 Phaseolus vulgaris HOM05D005845 ORTHO05D007067 4.9e-29 131.3 122 59.8
Sopen09g005730 Solanum pennellii HOM05D005845 ORTHO05D007067 4.9e-29 131.3 115 62.6
Aqoxy1G00879 Aquilegia oxysepala HOM05D005845 ORTHO05D007067 6.4e-29 131.0 122 63.1
AUR62018118 Chenopodium quinoa HOM05D005845 ORTHO05D007067 6.4e-29 131.0 76 81.6
Solyc09g011010.3 Solanum lycopersicum HOM05D005845 ORTHO05D007067 8.4e-29 130.6 115 62.6
CANSAT35G1952 Cannabis sativa HOM05D005845 ORTHO05D007067 1.1e-28 130.2 82 78.0
AUR62034449 Chenopodium quinoa HOM05D005845 ORTHO05D007067 5.4e-28 127.9 76 80.3
SalBow1G4544 Salvia bowleyana HOM05D005845 ORTHO05D007067 5.4e-28 127.9 107 58.9
SalBow7G2664 Salvia bowleyana HOM05D005845 ORTHO05D007067 5.4e-28 127.9 107 58.9
PGSC0003DMG400008901 Solanum tuberosum HOM05D005845 ORTHO05D007067 5.4e-28 127.9 115 61.7
FAN05G4617 Fragaria x ananassa HOM05D005845 ORTHO05D007067 7.1e-28 127.5 122 59.0
Migut.L01960 Erythranthe guttata HOM05D005845 ORTHO05D007067 2.7e-27 125.6 81 72.8
Thecc.05G035600 Theobroma cacao HOM05D005845 ORTHO05D007067 7.8e-27 124.0 122 59.0
Hund14261 Selenicereus undatus HOM05D006267 ORTHO05D007490 1.0e-26 123.6 84 71.4
ATR0559G337 Amborella trichopoda HOM05D005845 ORTHO05D007067 2.3e-26 122.5 73 78.1
BcaC05g29521 Brassica carinata HOM05D005845 ORTHO05D007067 8.7e-26 120.6 120 59.2
CARHR083690 Cardamine hirsuta HOM05D005845 ORTHO05D007067 1.9e-25 119.4 124 55.6
Eucgr.G01508 Eucalyptus grandis HOM05D005845 ORTHO05D007067 1.9e-25 119.4 118 54.2
SEGI_39626 Sequoiadendron giganteum HOM05D005845 ORTHO05D007067 1.9e-25 119.4 76 73.7
BcaC05g29660 Brassica carinata HOM05D005845 ORTHO05D007067 2.5e-25 119.0 117 56.4
C05p58690 Brassica napus HOM05D005845 ORTHO05D007067 2.5e-25 119.0 117 56.4
BolC5t34518H Brassica oleracea HOM05D005845 ORTHO05D007067 2.5e-25 119.0 117 56.4
CARHR211240 Cardamine hirsuta HOM05D005845 ORTHO05D007067 2.5e-25 119.0 117 55.6
Zm00001eb299980 Zea mays HOM05D005845 ORTHO05D007067 3.3e-25 118.6 119 53.8
MELO3C009241.2 Cucumis melo HOM05D005845 ORTHO05D007067 4.3e-25 118.2 151 48.3
Sp3g07700 Schrenkiella parvula HOM05D005845 ORTHO05D007067 4.3e-25 118.2 116 56.9
Lalb_Chr01g0022631 Lupinus albus HOM05D005845 ORTHO05D007067 5.6e-25 117.9 88 67.0
EL10Ac2g03022 Beta vulgaris HOM05D005845 ORTHO05D007067 7.3e-25 117.5 111 59.5
Os05g0292800 Oryza sativa ssp. japonica HOM05D005845 ORTHO05D007067 7.3e-25 117.5 122 53.3
BraA05t22747Z Brassica rapa HOM05D005845 ORTHO05D007067 9.6e-25 117.1 119 57.1
Carub.0006s0096 Capsella rubella HOM05D005845 ORTHO05D007067 9.6e-25 117.1 80 70.0
Sp6g40320 Schrenkiella parvula HOM05D005845 ORTHO05D007067 9.6e-25 117.1 118 55.1
Carub.0003s0843 Capsella rubella HOM05D005845 ORTHO05D007067 1.6e-24 116.3 118 57.6
Thhalv10015070m.g Eutrema salsugineum HOM05D005845 ORTHO05D007067 1.6e-24 116.3 119 57.1
A05p39650 Brassica napus HOM05D005845 ORTHO05D007067 2.1e-24 115.9 120 57.5
Dinv35574 Davidia involucrata HOM05D005845 ORTHO05D007067 2.8e-24 115.5 97 64.9
Actinidia11275 Actinidia chinensis HOM05D005845 ORTHO05D007067 3.6e-24 115.2 93 66.7
Eucgr.K03089 Eucalyptus grandis HOM05D005845 ORTHO05D007067 4.8e-24 114.8 80 67.5
AL6G11350 Arabidopsis lyrata HOM05D005845 ORTHO05D007067 6.2e-24 114.4 99 62.6
AL3G20470 Arabidopsis lyrata HOM05D005845 ORTHO05D007067 8.1e-24 114.0 119 53.8
Aa31LG3G1810 Aethionema arabicum HOM05D005845 ORTHO05D007067 1.1e-23 113.6 123 54.5
A03p00540 Brassica napus HOM05D005845 ORTHO05D007067 1.1e-23 113.6 119 53.8
BraA03t09444Z Brassica rapa HOM05D005845 ORTHO05D007067 1.1e-23 113.6 119 53.8
BcaB01g06068 Brassica carinata HOM05D005845 ORTHO05D007067 1.8e-23 112.8 118 52.5
BcaB01g06213 Brassica carinata HOM05D005845 ORTHO05D007067 1.8e-23 112.8 74 71.6
C03p00800 Brassica napus HOM05D005845 ORTHO05D007067 1.8e-23 112.8 118 52.5
BolC3t12643H Brassica oleracea HOM05D005845 ORTHO05D007067 1.8e-23 112.8 118 52.5
AT5G02120 Arabidopsis thaliana HOM05D005845 ORTHO05D007067 2.4e-23 112.5 117 53.0
Os12g0480100 Oryza sativa ssp. japonica HOM05D005845 ORTHO05D007067 1.2e-22 110.2 89 58.4
CDE06G2558 Ceratophyllum demersum HOM05D000816 ORTHO05D009154 5.8e-22 107.8 109 53.2
Eucgr.K03094 Eucalyptus grandis HOM05D005845 ORTHO05D007067 9.9e-22 107.1 66 77.3
Zm00001eb090340 Zea mays HOM05D005845 ORTHO05D007067 1.3e-21 106.7 64 73.4
TAR369G0629 Trochodendron aralioides HOM05D005845 ORTHO05D007067 1.7e-21 106.3 100 66.0
Oeu023072.1 Olea europaea HOM05D005845 ORTHO05D007067 7.1e-20 100.9 59 78.0
Pp3c18_21050 Physcomitrium patens HOM05D005845 ORTHO05D007067 2.7e-19 99.0 73 64.4
AagrBONN_evm.TU.Sc2ySwM_344.1593 Anthoceros agrestis HOM05D005845 ORTHO05D007067 6.0e-19 97.8 75 64.0
Pp3c22_8010 Physcomitrium patens HOM05D005845 ORTHO05D007067 6.0e-19 97.8 72 62.5
HPP92_019240 Vanilla planifolia HOM05D005845 ORTHO05D007067 1.5e-17 93.2 90 55.6
Eucgr.G00292 Eucalyptus grandis HOM05D005845 ORTHO05D007067 4.3e-17 91.7 51 84.3
Mapoly0151s0005 Marchantia polymorpha HOM05D005845 ORTHO05D007067 5.6e-17 91.3 100 48.0
Eucgr.K03086 Eucalyptus grandis HOM05D005845 ORTHO05D007067 1.6e-16 89.7 66 65.2
Zm00001eb372120 Zea mays HOM05D005845 ORTHO05D007067 2.1e-16 89.4 54 72.2
Glyma.18G185300 Glycine max HOM05D005845 ORTHO05D007067 3.6e-16 88.6 121 47.1
SEGI_14936 Sequoiadendron giganteum HOM05D005845 ORTHO05D007067 4.8e-16 88.2 55 72.7
CBR_g4596 Chara braunii HOM05D005845 ORTHO05D007067 3.1e-15 85.5 87 55.2
TPR.G22204 Trifolium pratense HOM05D000026 ORTHO05D007067 3.4e-14 82.0 112 51.8
Rhsim04G0160800 Rhododendron simsii HOM05D005845 ORTHO05D007067 9.9e-14 80.5 134 42.5
TPR.G34843 Trifolium pratense HOM05D005845 ORTHO05D007067 1.3e-13 80.1 42 88.1
Cre02.g109950 Chlamydomonas reinhardtii HOM05D005845 ORTHO05D007067 3.4e-06 55.5 83 36.1


User provided reference genes

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