Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3A954T63 Lonicera japonica HOM05D007005 ORTHO05D008799 1.3e-99 366.3 180 100.0
Haze_20998 Corylus avellana HOM05D007005 ORTHO05D008799 1.2e-42 177.2 178 57.3
Atru.chr8.2235 Acer truncatum HOM05D007005 ORTHO05D008799 1.8e-40 169.9 172 56.4
Dinv23100 Davidia involucrata HOM05D007005 ORTHO05D008799 2.4e-40 169.5 173 58.4
Actinidia11591 Actinidia chinensis HOM05D007005 ORTHO05D008799 1.6e-39 166.8 178 52.2
QL07p035783 Quercus lobata HOM05D007005 ORTHO05D008799 2.2e-38 162.9 180 55.6
Prupe.6G276600 Prunus persica HOM05D007005 ORTHO05D008799 1.2e-36 157.1 170 50.6
RcHm_v2.0_Chr3g0463211 Rosa chinensis HOM05D007005 ORTHO05D008799 1.6e-36 156.8 181 51.4
CiPaw.09G208900 Carya illinoinensis HOM05D007005 ORTHO05D008799 2.7e-36 156.0 173 54.9
Ciclev10013484m.g Citrus clementina HOM05D007005 ORTHO05D008799 8.0e-36 154.5 173 52.0
Nitab4.5_0000511g0110 Nicotiana tabacum HOM05D007005 ORTHO05D008799 5.2e-35 151.8 179 48.0
TAR623G0543 Trochodendron aralioides HOM05D007005 ORTHO05D008799 5.2e-35 151.8 170 53.5
Sed0008022 Sechium edule HOM05D007005 ORTHO05D008799 7.5e-34 147.9 174 50.0
Potri.006G099700 Populus trichocarpa HOM05D007005 ORTHO05D008799 4.8e-33 145.2 171 48.5
Thecc.05G016700 Theobroma cacao HOM05D007005 ORTHO05D008799 6.3e-33 144.8 170 51.2
DCAR_015423 Daucus carota HOM05D007005 ORTHO05D008799 5.4e-32 141.7 181 47.5
GSVIVG01033964001 Vitis vinifera HOM05D007005 ORTHO05D008799 7.0e-32 141.4 114 61.4
HanXRQChr11g0331611 Helianthus annuus HOM05D007005 ORTHO05D008799 9.1e-32 141.0 171 49.7
Sabra06G0076600 Salix brachista HOM05D007005 ORTHO05D008799 1.2e-31 140.6 171 46.2
SGA_v2.0_scaffold85G26741 Striga asiatica HOM05D007005 ORTHO05D008799 1.6e-31 140.2 172 50.0
Gorai.012G113400 Gossypium raimondii HOM05D007005 ORTHO05D008799 3.5e-31 139.0 134 56.7
Manes.09G104000 Manihot esculenta HOM05D007005 ORTHO05D008799 3.5e-31 139.0 170 48.8
TWI77G0287 Tripterygium wilfordii HOM05D007005 ORTHO05D008799 3.5e-31 139.0 165 48.5
Gohir.D04G129900 Gossypium hirsutum HOM05D007005 ORTHO05D008799 5.9e-31 138.3 137 55.5
Lsat_1_v5_gn_8_102220 Lactuca sativa HOM05D007005 ORTHO05D008799 5.9e-31 138.3 162 50.0
Psat3g129840 Pisum sativum HOM05D007005 ORTHO05D008799 5.9e-31 138.3 178 50.0
Duzib093G0110 Durio zibethinus HOM05D007005 ORTHO05D008799 1.0e-30 137.5 134 58.2
Glyma.07G149300 Glycine max HOM05D007005 ORTHO05D008799 1.0e-30 137.5 154 53.9
PGSC0003DMG400011791 Solanum tuberosum HOM05D007005 ORTHO05D008799 1.0e-30 137.5 170 47.1
MELO3C003296.2 Cucumis melo HOM05D007005 ORTHO05D008799 1.3e-30 137.1 175 46.9
CsaV3_4G026230 Cucumis sativus L. HOM05D007005 ORTHO05D008799 1.7e-30 136.7 175 47.4
Lalb_Chr19g0124511 Lupinus albus HOM05D007005 ORTHO05D008799 2.9e-30 136.0 168 50.6
arahy.Tifrunner.gnm1.ann1.BVC6L3 Arachis hypogaea HOM05D007005 ORTHO05D008799 5.0e-30 135.2 180 48.9
Nitab4.5_0000335g0230 Nicotiana tabacum HOM05D007005 ORTHO05D008799 5.0e-30 135.2 165 44.2
Peaxi162Scf00141g00921 Petunia axillaris HOM05D007005 ORTHO05D008799 5.0e-30 135.2 142 50.0
Migut.J00176 Erythranthe guttata HOM05D007005 ORTHO05D008799 1.1e-29 134.0 164 48.8
Solyc09g005230.3 Solanum lycopersicum HOM05D007005 ORTHO05D008799 1.1e-29 134.0 160 47.5
FvH4_6g11500 Fragaria vesca HOM05D007005 ORTHO05D008799 1.5e-29 133.7 173 46.8
PSO339G1757 Papaver somniferum HOM05D007005 ORTHO05D008799 1.9e-29 133.3 168 48.8
vmacro20260 Vaccinium macrocarpon HOM05D007005 ORTHO05D008799 1.9e-29 133.3 166 47.6
ClCG04G007040 Citrullus lanatus HOM05D007005 ORTHO05D008799 2.5e-29 132.9 178 47.8
CARHR211870 Cardamine hirsuta HOM05D007005 ORTHO05D008799 3.2e-29 132.5 176 47.2
FAN14G1027 Fragaria x ananassa HOM05D007005 ORTHO05D008799 3.2e-29 132.5 173 46.2
Medtr7g068310 Medicago truncatula HOM05D007005 ORTHO05D008799 4.2e-29 132.1 171 45.6
Cpa.g.sc11.163 Carica papaya HOM05D007005 ORTHO05D008799 7.2e-29 131.3 112 59.8
ECA236G2421 Erigeron canadensis HOM05D007005 ORTHO05D008799 9.5e-29 131.0 146 51.4
Thhalv10013293m.g Eutrema salsugineum HOM05D007005 ORTHO05D008799 9.5e-29 131.0 158 49.4
COL.COLO4_14541 Corchorus olitorius HOM05D007005 ORTHO05D004733 1.2e-28 130.6 109 59.6
Glyma.18G200200 Glycine max HOM05D007005 ORTHO05D008799 1.6e-28 130.2 153 52.9
Sp6g40790 Schrenkiella parvula HOM05D007005 ORTHO05D008799 2.8e-28 129.4 177 45.8
BcaB01g06231 Brassica carinata HOM05D007005 ORTHO05D008799 1.4e-27 127.1 178 44.9
Rhsim05G0214600 Rhododendron simsii HOM05D007005 ORTHO05D008799 5.2e-27 125.2 173 44.5
VMungo1383G2262 Vigna mungo HOM05D007005 ORTHO05D008799 5.2e-27 125.2 134 54.5
BcaB01g06100 Brassica carinata HOM05D007005 ORTHO05D008799 6.8e-27 124.8 182 44.0
PSO384G0643 Papaver somniferum HOM05D007005 ORTHO05D008799 8.8e-27 124.4 168 46.4
AT5G01510 Arabidopsis thaliana HOM05D007005 ORTHO05D008799 1.5e-26 123.6 176 44.3
AUR62030448 Chenopodium quinoa HOM05D007005 ORTHO05D008799 2.0e-26 123.2 158 46.2
arahy.Tifrunner.gnm1.ann1.T1PXLY Arachis hypogaea HOM05D007005 ORTHO05D008799 2.6e-26 122.9 172 46.5
THA.LOC104823299 Tarenaya hassleriana HOM05D007005 ORTHO05D008799 7.5e-26 121.3 112 55.4
AL6G10540 Arabidopsis lyrata HOM05D007005 ORTHO05D008799 9.8e-26 120.9 161 47.8
Aa31LG1G23130 Aethionema arabicum HOM05D007005 ORTHO05D008799 1.7e-25 120.2 168 45.2
FAN14G1400 Fragaria x ananassa HOM05D007005 ORTHO05D008799 1.7e-25 120.2 192 41.1
MBI14_g31684_MAGBIO Magnolia biondii HOM05D007005 ORTHO05D008799 1.7e-25 120.2 117 53.8
BolC3t12610H Brassica oleracea HOM05D007005 ORTHO05D008799 2.2e-25 119.8 183 44.3
Carub.0006s0032 Capsella rubella HOM05D007005 ORTHO05D008799 6.3e-25 118.2 176 42.6
FAN09G3623 Fragaria x ananassa HOM05D007005 ORTHO05D008799 6.3e-25 118.2 204 39.7
Hund11016 Selenicereus undatus HOM05D007005 ORTHO05D008799 6.3e-25 118.2 170 42.9
Cc06_g01420 Coffea canephora HOM05D007005 ORTHO05D008799 1.1e-24 117.5 160 46.9
CDE02G1196 Ceratophyllum demersum HOM05D007005 ORTHO05D008799 2.4e-24 116.3 111 54.1
BraA03t09419Z Brassica rapa HOM05D007005 ORTHO05D008799 3.1e-24 115.9 171 43.3
Eucgr.A00504 Eucalyptus grandis HOM05D007005 ORTHO05D008799 3.1e-24 115.9 133 50.4
SalBow5G0518 Salvia bowleyana HOM05D007005 ORTHO05D008799 3.1e-24 115.9 162 46.9
FAN02G1380 Fragaria x ananassa HOM05D007005 ORTHO05D008799 1.6e-23 113.6 161 44.1
Ah.02g115880 Amaranthus hybridus HOM05D007005 ORTHO05D008799 2.0e-23 113.2 151 45.0
Sc01g0006480 Simmondsia chinensis HOM05D007005 ORTHO05D008799 3.5e-23 112.5 153 47.1
C03p00450 Brassica napus HOM05D007005 ORTHO05D008799 5.9e-23 111.7 204 39.7
AUR62010465 Chenopodium quinoa HOM05D007005 ORTHO05D008799 3.8e-22 109.0 128 47.7
FAN05G3292 Fragaria x ananassa HOM05D007005 ORTHO05D008799 1.1e-21 107.5 106 54.7
FAN05G3789 Fragaria x ananassa HOM05D007005 ORTHO05D008799 1.1e-21 107.5 106 54.7
unitig_8.g3230 Utricularia gibba HOM05D007005 ORTHO05D008799 1.1e-21 107.5 125 45.6
Os01g0141600 Oryza sativa ssp. japonica HOM05D007005 ORTHO05D008799 1.5e-21 107.1 116 50.0
SEGI_37921 Sequoiadendron giganteum HOM05D007005 ORTHO05D008799 7.3e-21 104.8 113 50.4
Sopen09g001210 Solanum pennellii HOM05D007005 ORTHO05D008799 9.5e-21 104.4 158 40.5
EL10Ac5g12569 Beta vulgaris HOM05D007005 ORTHO05D008799 2.8e-20 102.8 111 49.5
Ca_07634_v3 Cicer arietinum L. HOM05D007005 ORTHO05D008799 6.1e-20 101.7 157 44.6
ATR0618G035 Amborella trichopoda HOM05D007005 ORTHO05D008799 3.0e-19 99.4 144 41.7
A03p00280 Brassica napus HOM05D007005 ORTHO05D008799 8.9e-19 97.8 190 37.9
HPP92_005562 Vanilla planifolia HOM05D007005 ORTHO05D008799 1.2e-18 97.4 147 39.5
arahy.Tifrunner.gnm1.ann1.Y2B821 Arachis hypogaea HOM05D007005 ORTHO05D008799 1.9e-13 80.1 88 51.1
Lsat_1_v5_gn_3_30860 Lactuca sativa HOM05D007005 ORTHO05D008799 2.8e-12 76.3 60 60.0
Gohir.A04G089800 Gossypium hirsutum HOM05D007005 ORTHO05D008799 1.2e-10 70.9 55 67.3
Nn2g11475 Nelumbo nucifera HOM05D007005 ORTHO05D008799 1.5e-10 70.5 42 81.0
Mapoly0076s0023 Marchantia polymorpha HOM05D007005 ORTHO05D008799 2.0e-10 70.1 159 34.6
CSS0015389 Camellia sinensis var. sinensis HOM05D007005 ORTHO05D008799 5.8e-10 68.6 35 91.4
Phvul.008G104800 Phaseolus vulgaris HOM05D007005 ORTHO05D008799 5.8e-10 68.6 35 91.4
CBR_g48395 Chara braunii HOM05D002321 ORTHO05D008799 6.0e-07 58.5 63 46.0
SMO367G1276 Selaginella moellendorffii HOM05D007005 ORTHO05D008799 1.0e-06 57.8 35 74.3
CAN.G5.36 Capsicum annuum HOM05D007005 ORTHO05D008799 1.7e-06 57.0 50 42.0


User provided reference genes

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