Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3A951T30 Lonicera japonica HOM05D004149 ORTHO05D005028 3.3e-144 515.0 252 100.0
Lsat_1_v5_gn_5_149460 Lactuca sativa HOM05D004149 ORTHO05D005028 4.3e-88 328.6 262 63.4
Cc06_g01230 Coffea canephora HOM05D004149 ORTHO05D005028 7.4e-88 327.8 252 66.3
Dinv14509 Davidia involucrata HOM05D004149 ORTHO05D005028 3.4e-85 318.9 263 63.9
GSVIVG01011172001 Vitis vinifera HOM05D004149 ORTHO05D005028 4.5e-85 318.5 262 63.0
Hma1.2p1_0479F.1_g161390 Hydrangea macrophylla HOM05D004149 ORTHO05D005028 1.3e-84 317.0 262 62.6
QL07p035253 Quercus lobata HOM05D004149 ORTHO05D005028 1.7e-84 316.6 250 63.2
Migut.J00152 Erythranthe guttata HOM05D004149 ORTHO05D005028 3.8e-84 315.5 243 67.1
DCAR_018696 Daucus carota HOM05D004149 ORTHO05D005028 8.4e-84 314.3 261 62.5
SGA_v2.0_scaffold75G25021 Striga asiatica HOM05D004149 ORTHO05D005028 1.9e-83 313.2 251 62.5
HanXRQChr13g0406611 Helianthus annuus HOM05D004149 ORTHO05D005028 2.5e-83 312.8 257 64.2
CAN.G740.4 Capsicum annuum HOM05D004149 ORTHO05D005028 4.2e-83 312.0 257 62.6
Nitab4.5_0000261g0010 Nicotiana tabacum HOM05D004149 ORTHO05D005028 4.2e-83 312.0 261 62.1
TAR633G0450 Trochodendron aralioides HOM05D004149 ORTHO05D005028 1.2e-82 310.5 261 62.8
Nn2g10866 Nelumbo nucifera HOM05D004149 ORTHO05D005028 2.7e-82 309.3 255 62.0
CiPaw.09G210500 Carya illinoinensis HOM05D004149 ORTHO05D005028 7.9e-82 307.8 261 60.9
Nitab4.5_0002020g0030 Nicotiana tabacum HOM05D004149 ORTHO05D005028 1.3e-81 307.0 260 61.2
Sopen09g001490 Solanum pennellii HOM05D004149 ORTHO05D005028 6.7e-81 304.7 263 60.5
CSS0009567 Camellia sinensis var. sinensis HOM05D004149 ORTHO05D005028 8.7e-81 304.3 262 61.8
PSO339G1238 Papaver somniferum HOM05D004149 ORTHO05D005028 1.9e-80 303.1 262 60.7
PSO384G4313 Papaver somniferum HOM05D004149 ORTHO05D005028 2.5e-80 302.8 262 60.7
Potri.016G117600 Populus trichocarpa HOM05D004149 ORTHO05D005028 3.3e-80 302.4 238 66.8
ClCG10G022210 Citrullus lanatus HOM05D004149 ORTHO05D005028 4.3e-80 302.0 260 60.0
Aa31LG4G16110 Aethionema arabicum HOM05D004149 ORTHO05D005028 7.4e-80 301.2 250 62.8
Sabra16G0113700 Salix brachista HOM05D004149 ORTHO05D005028 7.4e-80 301.2 240 66.2
Rhsim05G0216800 Rhododendron simsii HOM05D004149 ORTHO05D005028 9.7e-80 300.8 255 61.2
PGSC0003DMG400004449 Solanum tuberosum HOM05D004149 ORTHO05D005028 9.7e-80 300.8 264 59.8
Haze_21017 Corylus avellana HOM05D004149 ORTHO05D005028 1.3e-79 300.4 263 59.3
Duzib168G0285 Durio zibethinus HOM05D004149 ORTHO05D005028 1.6e-79 300.1 265 61.5
Cfa017194 Carpinus fangiana HOM05D004149 ORTHO05D005028 3.7e-79 298.9 263 58.9
Actinidia11575 Actinidia chinensis HOM05D004149 ORTHO05D005028 6.3e-79 298.1 267 60.3
ECA248G2679 Erigeron canadensis HOM05D000014 ORTHO05D000093 2.4e-78 296.2 245 61.6
CsaV3_3G033680 Cucumis sativus L. HOM05D004149 ORTHO05D005028 1.2e-77 293.9 250 60.4
CARHR272500 Cardamine hirsuta HOM05D004149 ORTHO05D005028 1.5e-77 293.5 253 59.7
MELO3C009158.2 Cucumis melo HOM05D004149 ORTHO05D005028 2.0e-77 293.1 261 57.5
unitig_578.g15899 Utricularia gibba HOM05D004149 ORTHO05D005028 3.4e-77 292.4 256 58.6
BolC9t57922H Brassica oleracea HOM05D004149 ORTHO05D005028 4.5e-77 292.0 256 58.2
BcaB01g04503 Brassica carinata HOM05D004149 ORTHO05D005028 5.9e-77 291.6 255 58.0
AT5G58640 Arabidopsis thaliana HOM05D004149 ORTHO05D005028 1.0e-76 290.8 256 58.6
C03p14190 Brassica napus HOM05D004149 ORTHO05D005028 1.3e-76 290.4 257 58.0
Prupe.6G279000 Prunus persica HOM05D004149 ORTHO05D005028 1.3e-76 290.4 253 59.3
Sed0021100 Sechium edule HOM05D004149 ORTHO05D005028 1.7e-76 290.0 252 59.1
BolC3t13864H Brassica oleracea HOM05D004149 ORTHO05D005028 2.2e-76 289.7 257 58.0
Eucgr.B02246 Eucalyptus grandis HOM05D004149 ORTHO05D005028 2.2e-76 289.7 260 58.5
AT3G47300 Arabidopsis thaliana HOM05D004149 ORTHO05D005028 2.9e-76 289.3 232 62.1
Aqoxy4G02534 Aquilegia oxysepala HOM05D004149 ORTHO05D005028 6.5e-76 288.1 265 57.0
A10p15620 Brassica napus HOM05D004149 ORTHO05D005028 1.1e-75 287.3 257 58.8
BraA10t43671Z Brassica rapa HOM05D004149 ORTHO05D005028 1.1e-75 287.3 257 58.8
Carub.0008s1926 Capsella rubella HOM05D004149 ORTHO05D005028 1.4e-75 287.0 255 58.0
Ciclev10029239m.g Citrus clementina HOM05D004149 ORTHO05D005028 1.4e-75 287.0 261 59.8
Thhalv10010643m.g Eutrema salsugineum HOM05D004149 ORTHO05D005028 2.5e-75 286.2 245 59.6
Thhalv10014590m.g Eutrema salsugineum HOM05D004149 ORTHO05D005028 2.5e-75 286.2 256 58.6
Sp6g20340 Schrenkiella parvula HOM05D004149 ORTHO05D005028 5.5e-75 285.0 256 57.8
arahy.Tifrunner.gnm1.ann1.43A4DE Arachis hypogaea HOM05D004149 ORTHO05D005028 7.2e-75 284.6 249 60.2
A03p12090 Brassica napus HOM05D004149 ORTHO05D005028 1.6e-74 283.5 255 56.9
C09p50720 Brassica napus HOM05D004149 ORTHO05D005028 1.6e-74 283.5 256 57.4
BraA03t10521Z Brassica rapa HOM05D004149 ORTHO05D005028 1.6e-74 283.5 255 56.9
Thecc.09G299600 Theobroma cacao HOM05D004149 ORTHO05D005028 2.7e-74 282.7 260 60.4
arahy.Tifrunner.gnm1.ann1.AG3942 Arachis hypogaea HOM05D004149 ORTHO05D005028 3.6e-74 282.3 249 59.4
Lj2C73G10 Lonicera japonica HOM05D004149 ORTHO05D005028 3.6e-74 282.3 294 54.8
LjContig00155g0022980 Lotus japonicus HOM05D004149 ORTHO05D005028 3.6e-74 282.3 241 60.6
Gorai.006G105900 Gossypium raimondii HOM05D004149 ORTHO05D005028 6.1e-74 281.6 248 61.3
AL8G34910 Arabidopsis lyrata HOM05D004149 ORTHO05D005028 7.9e-74 281.2 257 57.2
EL10Ac5g12549 Beta vulgaris HOM05D004149 ORTHO05D005028 1.4e-73 280.4 262 56.9
Gohir.D09G089700 Gossypium hirsutum HOM05D004149 ORTHO05D005028 1.4e-73 280.4 263 58.2
Ah.12g058720 Amaranthus hybridus HOM05D004149 ORTHO05D005028 1.8e-73 280.0 266 56.0
TPR.G34577 Trifolium pratense HOM05D004149 ORTHO05D005028 2.3e-73 279.6 251 59.4
Gohir.A09G089600 Gossypium hirsutum HOM05D004149 ORTHO05D005028 5.1e-73 278.5 245 60.8
Lalb_Chr07g0193651 Lupinus albus HOM05D004149 ORTHO05D005028 2.5e-72 276.2 250 57.2
Sc22g0002520 Simmondsia chinensis HOM05D004149 ORTHO05D005028 5.7e-72 275.0 257 55.6
Manes.01G160400 Manihot esculenta HOM05D004149 ORTHO05D005028 7.4e-72 274.6 245 59.6
QL01p038648 Quercus lobata HOM05D004149 ORTHO05D005028 7.4e-72 274.6 263 56.3
ATR0681G135 Amborella trichopoda HOM05D004149 ORTHO05D005028 9.7e-72 274.2 249 55.8
Medtr5g071240 Medicago truncatula HOM05D004149 ORTHO05D005028 1.7e-71 273.5 241 60.6
COL.COLO4_19178 Corchorus olitorius HOM05D004149 ORTHO05D005028 2.2e-71 273.1 248 60.5
Glyma.03G056500 Glycine max HOM05D004149 ORTHO05D005028 2.2e-71 273.1 245 58.4
Lalb_Chr10g0103381 Lupinus albus HOM05D004149 ORTHO05D005028 3.7e-71 272.3 249 59.0
Manes.09G107600 Manihot esculenta HOM05D004149 ORTHO05D005028 8.2e-71 271.2 224 66.1
MD03G1067200 Malus domestica HOM05D004149 ORTHO05D005028 1.1e-70 270.8 250 57.6
TWI31G0142 Tripterygium wilfordii HOM05D004149 ORTHO05D005028 1.1e-70 270.8 263 56.7
VMungo0331G2046 Vigna mungo HOM05D004149 ORTHO05D005028 1.4e-70 270.4 253 56.1
Phvul.010G076100 Phaseolus vulgaris HOM05D004149 ORTHO05D005028 2.4e-70 269.6 250 57.2
Prupe.6G055700 Prunus persica HOM05D004149 ORTHO05D005028 2.4e-70 269.6 258 56.2
VMungo0647G1724 Vigna mungo HOM05D004149 ORTHO05D005028 5.3e-70 268.5 247 58.3
Psat2g057600 Pisum sativum HOM05D004149 ORTHO05D005028 6.9e-70 268.1 243 59.3
Haze_24342 Corylus avellana HOM05D004149 ORTHO05D005028 9.1e-70 267.7 263 56.3
Lalb_Chr04g0252201 Lupinus albus HOM05D004149 ORTHO05D005028 9.1e-70 267.7 241 58.5
MD12G1168700 Malus domestica HOM05D004149 ORTHO05D005028 9.1e-70 267.7 237 56.5
Ca_20283_v3 Cicer arietinum L. HOM05D004149 ORTHO05D005028 2.0e-69 266.5 257 56.0
AL5G26480 Arabidopsis lyrata HOM05D004149 ORTHO05D005028 2.6e-69 266.2 231 59.3
Hund14286 Selenicereus undatus HOM05D004149 ORTHO05D005028 4.5e-69 265.4 263 56.3
arahy.Tifrunner.gnm1.ann1.CPEN6V Arachis hypogaea HOM05D004149 ORTHO05D005028 7.7e-69 264.6 254 56.7
PGR102G2658 Punica granatum HOM05D004149 ORTHO05D005028 1.0e-68 264.2 258 54.7
Lj3g0002740 Lotus japonicus HOM05D004149 ORTHO05D005028 2.9e-68 262.7 257 54.9
arahy.Tifrunner.gnm1.ann1.JHY1NE Arachis hypogaea HOM05D004149 ORTHO05D005028 3.8e-68 262.3 250 57.2
Glyma.14G194500 Glycine max HOM05D004149 ORTHO05D005028 3.8e-68 262.3 251 57.4
Potri.009G047000 Populus trichocarpa HOM05D004149 ORTHO05D005028 3.8e-68 262.3 255 54.5
Zm00001eb368380 Zea mays HOM05D004149 ORTHO05D005028 8.5e-68 261.2 256 53.5
FAN25G1984 Fragaria x ananassa HOM05D004149 ORTHO05D005028 2.5e-67 259.6 254 54.7
Phvul.008G260400 Phaseolus vulgaris HOM05D004149 ORTHO05D005028 2.5e-67 259.6 254 55.5
MD11G1071900 Malus domestica HOM05D004149 ORTHO05D005028 3.2e-67 259.2 271 53.1
FAN16G0525 Fragaria x ananassa HOM05D004149 ORTHO05D005028 4.2e-67 258.8 249 55.0
Glyma.02G227600 Glycine max HOM05D004149 ORTHO05D005028 4.2e-67 258.8 249 55.8
Zm00001eb351750 Zea mays HOM05D004149 ORTHO05D005028 5.5e-67 258.5 241 56.4
Cpa.g.sc112.1 Carica papaya HOM05D004149 ORTHO05D005028 1.2e-66 257.3 162 75.9
Psat7g245760 Pisum sativum HOM05D004149 ORTHO05D005028 2.1e-66 256.5 245 57.6
FvH4_3g38810 Fragaria vesca HOM05D004149 ORTHO05D005028 4.7e-66 255.4 249 54.2
FvH4_6g11300 Fragaria vesca HOM05D004149 ORTHO05D005028 4.7e-66 255.4 239 54.0
FAN14G0231 Fragaria x ananassa HOM05D004149 ORTHO05D005028 4.7e-66 255.4 239 54.0
FAN14G3883 Fragaria x ananassa HOM05D004149 ORTHO05D005028 4.7e-66 255.4 239 54.0
RcHm_v2.0_Chr3g0462841 Rosa chinensis HOM05D004149 ORTHO05D005028 4.7e-66 255.4 239 54.8
Atru.chr3.4194 Acer truncatum HOM05D004149 ORTHO05D005028 6.1e-66 255.0 159 74.8
CDE04G2602 Ceratophyllum demersum HOM05D004149 ORTHO05D005028 6.1e-66 255.0 241 56.0
Potri.001G253000 Populus trichocarpa HOM05D004149 ORTHO05D005028 7.9e-66 254.6 240 56.2
TPR.G13346 Trifolium pratense HOM05D004149 ORTHO05D005028 7.9e-66 254.6 253 55.3
HPP92_017934 Vanilla planifolia HOM05D004149 ORTHO05D005028 1.8e-65 253.4 254 55.5
CDE03G0191 Ceratophyllum demersum HOM05D004149 ORTHO05D005028 2.3e-65 253.1 247 53.4
Sp5g14550 Schrenkiella parvula HOM05D004149 ORTHO05D005028 5.1e-65 251.9 256 53.1
RcHm_v2.0_Chr5g0070001 Rosa chinensis HOM05D004149 ORTHO05D005028 1.1e-64 250.8 249 52.2
FAN05G2859 Fragaria x ananassa HOM05D004149 ORTHO05D005028 1.5e-64 250.4 239 53.1
Os05g0467300 Oryza sativa ssp. japonica HOM05D004149 ORTHO05D005028 3.3e-64 249.2 257 51.8
Peaxi162Scf00170g00124 Petunia axillaris HOM05D004149 ORTHO05D005028 7.4e-64 248.1 145 80.7
Os01g0832200 Oryza sativa ssp. japonica HOM05D004149 ORTHO05D005028 2.8e-63 246.1 244 52.9
FAN09G2001 Fragaria x ananassa HOM05D004149 ORTHO05D005028 1.1e-62 244.2 239 53.1
Medtr4g015610 Medicago truncatula HOM05D004149 ORTHO05D005028 7.0e-62 241.5 249 55.0
Cfa011711 Carpinus fangiana HOM05D004149 ORTHO05D005028 9.1e-62 241.1 168 69.0
Sabra09G0034400 Salix brachista HOM05D004149 ORTHO05D005028 2.0e-61 240.0 286 46.5
BcaC04g19825 Brassica carinata HOM05D004149 ORTHO05D005028 1.7e-60 236.9 218 56.0
AUR62030801 Chenopodium quinoa HOM05D004149 ORTHO05D005028 8.5e-60 234.6 254 51.2
CANSAT54G2318 Cannabis sativa HOM05D004149 ORTHO05D005028 1.6e-58 230.3 263 47.5
SEGI_37457 Sequoiadendron giganteum HOM05D004149 ORTHO05D005028 1.0e-57 227.6 242 49.6
Dinv14507 Davidia involucrata HOM05D011585 ORTHO05D005028 1.4e-57 227.3 137 80.3
AUR62030494 Chenopodium quinoa HOM05D004149 ORTHO05D005028 1.1e-56 224.2 146 71.9
MBI15_g14842_MAGBIO Magnolia biondii HOM05D004149 ORTHO05D005028 1.5e-56 223.8 142 72.5
SHI31752 Sapria himalayana HOM05D004149 ORTHO05D005028 2.0e-56 223.4 265 48.7
FAN11G2604 Fragaria x ananassa HOM05D004149 ORTHO05D005028 8.2e-55 218.0 277 47.7
Dinv03100 Davidia involucrata HOM05D004149 ORTHO05D005028 1.4e-54 217.2 140 73.6
CiPaw.14G058300 Carya illinoinensis HOM05D004149 ORTHO05D005028 1.7e-52 210.3 223 52.5
Ca_05615_v3 Cicer arietinum L. HOM05D004149 ORTHO05D005028 2.7e-50 203.0 131 74.8
Actinidia29092 Actinidia chinensis HOM05D004149 ORTHO05D005028 4.0e-49 199.1 251 47.4
CSS0016200 Camellia sinensis var. sinensis HOM05D004149 ORTHO05D005028 6.8e-49 198.4 130 75.4
FAN21G1905 Fragaria x ananassa HOM05D004149 ORTHO05D005028 1.6e-45 187.2 139 64.0
Carub.0005s1339 Capsella rubella HOM05D004149 ORTHO05D005028 2.0e-45 186.8 122 72.1
Ciclev10013383m.g Citrus clementina HOM05D004149 ORTHO05D005028 1.0e-44 184.5 148 59.5
Psat7g245800 Pisum sativum HOM05D004149 ORTHO05D005028 9.4e-43 177.9 122 73.0
SMO358G0328 Selaginella moellendorffii HOM05D004149 ORTHO05D005028 8.0e-42 174.9 147 53.7
Solyc09g005590.3 Solanum lycopersicum HOM05D004149 ORTHO05D005028 4.1e-38 162.5 97 75.3
vmacro20289 Vaccinium macrocarpon HOM05D004149 ORTHO05D005028 2.5e-35 153.3 134 60.4
FAN02G4186 Fragaria x ananassa HOM05D004149 ORTHO05D005028 2.8e-34 149.8 250 39.6
Atru.chr8.2258 Acer truncatum HOM05D004149 ORTHO05D005028 4.7e-34 149.1 98 67.3
MD03G1067500 Malus domestica HOM05D004149 ORTHO05D005028 2.3e-25 120.2 97 64.9
MD04G1155500 Malus domestica HOM05D004149 ORTHO05D005028 8.9e-25 118.2 116 50.9
Aqoxy2G00865 Aquilegia oxysepala HOM05D004149 ORTHO05D005028 1.9e-22 110.5 171 39.2
Sed0020125 Sechium edule HOM05D004149 ORTHO05D005028 3.0e-20 103.2 246 28.0
Cre14.g616950 Chlamydomonas reinhardtii HOM05D004149 ORTHO05D005028 2.8e-18 96.7 123 37.4
C07p23840 Brassica napus HOM05D004149 ORTHO05D005028 1.8e-17 94.0 79 58.2
Solyc09g005580.4 Solanum lycopersicum HOM05D004149 ORTHO05D005028 2.2e-15 87.0 132 44.7
PRCOL_00001680 Prasinoderma coloniale HOM05D004149 ORTHO05D005028 2.4e-14 83.6 169 30.2
MCO12G475 Micromonas commoda HOM05D004149 ORTHO05D005028 1.6e-13 80.9 145 30.3
CBR_g34707 Chara braunii HOM05D004149 ORTHO05D005028 1.3e-12 77.8 117 33.3
BcaB01g01543 Brassica carinata HOM05D004149 ORTHO05D039425 1.7e-12 77.4 80 52.5
MSTRG.19005 Avicennia marina HOM05D004149 ORTHO05D005028 1.1e-11 74.7 113 45.1
BcaC02g09351 Brassica carinata HOM05D004149 ORTHO05D094654 5.6e-11 72.4 73 50.7
GSVIVG01030787001 Vitis vinifera HOM05D004149 ORTHO05D005028 1.8e-09 67.4 115 39.1
GSVIVG01032328001 Vitis vinifera HOM05D004149 ORTHO05D005028 2.3e-09 67.0 123 38.2
GSVIVG01000345001 Vitis vinifera HOM05D000200 ORTHO05D011629 7.6e-08 62.0 115 39.1
BcaB06g29604 Brassica carinata HOM05D004149 ORTHO05D039425 1.1e-06 58.2 56 50.0


User provided reference genes

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