Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3A941G100 Lonicera japonica HOM05D004956 ORTHO05D006284 2.5e-98 362.5 232 100.0
Lj2A58T94 Lonicera japonica HOM05D004956 ORTHO05D006284 4.2e-45 185.7 195 56.9
Prupe.6G294000 Prunus persica HOM05D004956 ORTHO05D006284 2.1e-44 183.3 240 51.2
Dinv16973 Davidia involucrata HOM05D004956 ORTHO05D006284 3.5e-44 182.6 176 58.5
Medtr7g073340 Medicago truncatula HOM05D004956 ORTHO05D006284 3.5e-44 182.6 200 54.5
Dinv25347 Davidia involucrata HOM05D004956 ORTHO05D006284 3.0e-43 179.5 182 58.8
TAR633G0630 Trochodendron aralioides HOM05D004956 ORTHO05D006284 5.1e-43 178.7 176 56.8
CANSAT56G1492 Cannabis sativa HOM05D004956 ORTHO05D006284 1.5e-42 177.2 204 53.9
Atru.chr8.110 Acer truncatum HOM05D004956 ORTHO05D006284 2.5e-42 176.4 190 55.3
Rhsim05G0230900 Rhododendron simsii HOM05D004956 ORTHO05D006284 7.4e-42 174.9 184 58.2
CSS0023237 Camellia sinensis var. sinensis HOM05D004956 ORTHO05D006284 9.6e-42 174.5 197 53.8
Nn5g26844 Nelumbo nucifera HOM05D004956 ORTHO05D006284 9.6e-42 174.5 201 53.2
PSO384G1710 Papaver somniferum HOM05D004956 ORTHO05D006284 9.6e-42 174.5 223 54.3
CiPaw.09G221700 Carya illinoinensis HOM05D004956 ORTHO05D006284 1.3e-41 174.1 205 51.7
TPR.G14118 Trifolium pratense HOM05D004956 ORTHO05D006284 2.1e-41 173.3 203 51.2
Ciclev10012212m.g Citrus clementina HOM05D004956 ORTHO05D006284 3.7e-41 172.6 196 52.0
Migut.J00034 Erythranthe guttata HOM05D004956 ORTHO05D006284 8.1e-41 171.4 218 51.8
Eucgr.K01286 Eucalyptus grandis HOM05D004956 ORTHO05D006284 1.1e-40 171.0 196 51.0
Cc06_g00390 Coffea canephora HOM05D004956 ORTHO05D006284 1.4e-40 170.6 221 49.8
MBI15_g01605_MAGBIO Magnolia biondii HOM05D004956 ORTHO05D006284 1.4e-40 170.6 216 51.4
Psat3g119400 Pisum sativum HOM05D004956 ORTHO05D006284 1.4e-40 170.6 209 51.2
Cfa017027 Carpinus fangiana HOM05D004956 ORTHO05D006284 4.0e-40 169.1 212 49.1
Manes.08G170900 Manihot esculenta HOM05D004956 ORTHO05D006284 4.0e-40 169.1 174 54.6
arahy.Tifrunner.gnm1.ann1.GGR1PK Arachis hypogaea HOM05D004956 ORTHO05D006284 5.3e-40 168.7 194 53.1
Lalb_Chr19g0123941 Lupinus albus HOM05D004956 ORTHO05D006284 5.3e-40 168.7 208 48.6
arahy.Tifrunner.gnm1.ann1.J3KH6W Arachis hypogaea HOM05D004956 ORTHO05D006284 6.9e-40 168.3 194 53.1
FAN02G3876 Fragaria x ananassa HOM05D004956 ORTHO05D006284 6.9e-40 168.3 176 55.1
Oeu026947.1 Olea europaea HOM05D004956 ORTHO05D006284 6.9e-40 168.3 186 53.8
MSTRG.18940 Avicennia marina HOM05D004956 ORTHO05D006284 1.2e-39 167.5 210 53.3
Haze_21179 Corylus avellana HOM05D004956 ORTHO05D006284 1.2e-39 167.5 212 48.1
Manes.09G118300 Manihot esculenta HOM05D004956 ORTHO05D006284 1.2e-39 167.5 194 52.6
CAN.G120.2 Capsicum annuum HOM05D004956 ORTHO05D006284 1.5e-39 167.2 198 49.5
QL07p032047 Quercus lobata HOM05D004956 ORTHO05D006284 2.0e-39 166.8 217 49.8
Nitab4.5_0005145g0010 Nicotiana tabacum HOM05D004956 ORTHO05D006284 2.6e-39 166.4 197 51.8
TWI77G0812 Tripterygium wilfordii HOM05D004956 ORTHO05D006284 2.6e-39 166.4 203 51.2
Peaxi162Scf00732g00258 Petunia axillaris HOM05D004956 ORTHO05D006284 3.4e-39 166.0 244 45.9
Sc20g0007000 Simmondsia chinensis HOM05D004956 ORTHO05D006284 4.5e-39 165.6 209 49.3
Ca_02264_v3 Cicer arietinum L. HOM05D004956 ORTHO05D002183 5.8e-39 165.2 212 50.5
Actinidia11507 Actinidia chinensis HOM05D004956 ORTHO05D006284 7.6e-39 164.9 216 50.0
PGSC0003DMG400030019 Solanum tuberosum HOM05D004956 ORTHO05D006284 7.6e-39 164.9 182 52.2
HanXRQChr16g0510491 Helianthus annuus HOM05D004956 ORTHO05D006284 9.9e-39 164.5 183 55.2
TWI53G0108 Tripterygium wilfordii HOM05D004956 ORTHO05D006284 1.3e-38 164.1 212 49.5
HanXRQChr06g0181041 Helianthus annuus HOM05D004956 ORTHO05D006284 1.7e-38 163.7 198 52.0
ECA236G0648 Erigeron canadensis HOM05D004956 ORTHO05D006284 2.2e-38 163.3 200 51.5
Solyc09g015650.4 Solanum lycopersicum HOM05D004956 ORTHO05D006284 2.2e-38 163.3 224 46.0
Potri.006G108700 Populus trichocarpa HOM05D004956 ORTHO05D006284 3.8e-38 162.5 181 53.6
RcHm_v2.0_Chr3g0460431 Rosa chinensis HOM05D004956 ORTHO05D006284 3.8e-38 162.5 167 56.9
SalBow5G3051 Salvia bowleyana HOM05D004956 ORTHO05D006284 4.9e-38 162.2 197 50.8
Sc07g0005940 Simmondsia chinensis HOM05D004956 ORTHO05D006284 1.1e-37 161.0 176 53.4
Nn2g10294 Nelumbo nucifera HOM05D004956 ORTHO05D006284 1.4e-37 160.6 199 53.3
Hund03697 Selenicereus undatus HOM05D004956 ORTHO05D006284 1.4e-37 160.6 177 52.5
FAN09G4599 Fragaria x ananassa HOM05D004956 ORTHO05D006284 2.4e-37 159.8 194 51.0
Phvul.008G082300 Phaseolus vulgaris HOM05D004956 ORTHO05D006284 2.4e-37 159.8 208 46.2
Duzib268G1093 Durio zibethinus HOM05D004956 ORTHO05D006284 9.3e-37 157.9 217 49.8
Lalb_Chr03g0043881 Lupinus albus HOM05D004956 ORTHO05D006284 9.3e-37 157.9 225 47.1
FAN05G3806 Fragaria x ananassa HOM05D004956 ORTHO05D006284 1.2e-36 157.5 167 53.9
MD12G1188700 Malus domestica HOM05D004956 ORTHO05D006284 1.6e-36 157.1 176 67.6
Hma1.2p1_0174F.1_g076810 Hydrangea macrophylla HOM05D004956 ORTHO05D006284 2.1e-36 156.8 195 55.4
Nitab4.5_0000048g0050 Nicotiana tabacum HOM05D004956 ORTHO05D006284 2.7e-36 156.4 243 49.8
EL10Ac7g17106 Beta vulgaris HOM05D004956 ORTHO05D006284 3.5e-36 156.0 189 48.1
Lj1g0007503 Lotus japonicus HOM05D004956 ORTHO05D006284 6.0e-36 155.2 198 49.0
VMungo1383G1190 Vigna mungo HOM05D004956 ORTHO05D006284 6.0e-36 155.2 208 45.2
AUR62006421 Chenopodium quinoa HOM05D004956 ORTHO05D006284 1.0e-35 154.5 202 46.5
AUR62029770 Chenopodium quinoa HOM05D004956 ORTHO05D006284 1.3e-35 154.1 202 47.0
Cpa.g.sc0.102 Carica papaya HOM05D004956 ORTHO05D006284 2.3e-35 153.3 197 49.7
Lsat_1_v5_gn_8_110501 Lactuca sativa HOM05D004956 ORTHO05D006284 3.0e-35 152.9 177 53.1
THA.LOC104823353 Tarenaya hassleriana HOM05D004956 ORTHO05D006284 3.0e-35 152.9 182 52.2
Glyma.18G213500 Glycine max HOM05D004956 ORTHO05D006284 5.1e-35 152.1 208 45.2
Sabra06G0084700 Salix brachista HOM05D004956 ORTHO05D006284 8.7e-35 151.4 216 47.2
HPP92_018086 Vanilla planifolia HOM05D004956 ORTHO05D006284 8.7e-35 151.4 205 47.8
DCAR_015337 Daucus carota HOM05D004956 ORTHO05D006284 1.1e-34 151.0 196 54.6
Sabra04G0153800 Salix brachista HOM05D004956 ORTHO05D006284 2.5e-34 149.8 179 49.7
Ah.08g209270 Amaranthus hybridus HOM05D004956 ORTHO05D006284 5.6e-34 148.7 191 45.0
Ah.15g089990 Amaranthus hybridus HOM05D004956 ORTHO05D006284 7.4e-34 148.3 223 41.3
Gohir.D10G115200 Gossypium hirsutum HOM05D004956 ORTHO05D006284 9.6e-34 147.9 180 50.6
Gorai.011G126900 Gossypium raimondii HOM05D004956 ORTHO05D006284 1.3e-33 147.5 180 50.6
TAR267G0003 Trochodendron aralioides HOM05D004956 ORTHO05D006284 1.3e-33 147.5 213 46.9
Gohir.A10G151100 Gossypium hirsutum HOM05D004956 ORTHO05D006284 2.1e-33 146.7 180 50.0
Sp4g20880 Schrenkiella parvula HOM05D004956 ORTHO05D006284 6.2e-33 145.2 184 47.8
BcaB02g09182 Brassica carinata HOM05D004956 ORTHO05D006284 8.2e-33 144.8 180 48.3
Thhalv10016889m.g Eutrema salsugineum HOM05D004956 ORTHO05D006284 1.1e-32 144.4 190 47.9
AT2G38550 Arabidopsis thaliana HOM05D004956 ORTHO05D006284 1.4e-32 144.1 176 50.6
CARHR133230 Cardamine hirsuta HOM05D004956 ORTHO05D006284 1.4e-32 144.1 176 50.0
THA.LOC104806171 Tarenaya hassleriana HOM05D004956 ORTHO05D006284 1.4e-32 144.1 188 48.9
Carub.0004s2054 Capsella rubella HOM05D004956 ORTHO05D006284 5.3e-32 142.1 176 50.0
AL4G35830 Arabidopsis lyrata HOM05D004956 ORTHO05D006284 9.0e-32 141.4 176 50.6
BcaC02g12007 Brassica carinata HOM05D004956 ORTHO05D006284 1.5e-31 140.6 229 43.2
C04p08990 Brassica napus HOM05D004956 ORTHO05D006284 1.5e-31 140.6 229 43.2
BolC4t22488H Brassica oleracea HOM05D004956 ORTHO05D006284 1.5e-31 140.6 229 43.2
Sopen09g009840 Solanum pennellii HOM05D004956 ORTHO05D006284 1.5e-31 140.6 224 42.4
Sopen11g017880 Solanum pennellii HOM05D004956 ORTHO05D006284 2.6e-31 139.8 181 47.0
A05p07510 Brassica napus HOM05D004956 ORTHO05D006284 3.4e-31 139.4 184 47.3
BraA05t19716Z Brassica rapa HOM05D004956 ORTHO05D006284 3.4e-31 139.4 184 47.3
GSVIVG01030178001 Vitis vinifera HOM05D004956 ORTHO05D006284 3.4e-31 139.4 242 40.1
Aa31LG5G23380 Aethionema arabicum HOM05D004956 ORTHO05D006284 4.5e-31 139.0 180 47.8
Sopen03g003180 Solanum pennellii HOM05D004956 ORTHO05D006284 4.5e-31 139.0 184 46.2
SGA_v2.0_scaffold85G26605 Striga asiatica HOM05D004956 ORTHO05D006284 4.5e-31 139.0 195 43.1
MELO3C025223.2 Cucumis melo HOM05D004956 ORTHO05D006284 1.7e-30 137.1 195 43.1
Gohir.A02G003100 Gossypium hirsutum HOM05D004956 ORTHO05D006284 2.9e-30 136.3 199 57.3
Sed0012391 Sechium edule HOM05D004956 ORTHO05D006284 3.8e-30 136.0 200 52.0
Aqoxy1G01266 Aquilegia oxysepala HOM05D004956 ORTHO05D006284 4.9e-30 135.6 221 55.7
unitig_749.g14093 Utricularia gibba HOM05D004956 ORTHO05D006284 4.9e-30 135.6 171 47.4
Gorai.005G004000 Gossypium raimondii HOM05D004956 ORTHO05D006284 3.2e-29 132.9 183 58.5
DCAR_023974 Daucus carota HOM05D004956 ORTHO05D006284 4.2e-29 132.5 202 45.5
Sed0014033 Sechium edule HOM05D004956 ORTHO05D006284 4.2e-29 132.5 190 50.0
ClCG04G006350 Citrullus lanatus HOM05D004956 ORTHO05D006284 9.3e-29 131.3 224 44.6
MD04G1175000 Malus domestica HOM05D004956 ORTHO05D006284 9.3e-29 131.3 164 51.2
CSS0017588 Camellia sinensis var. sinensis HOM05D004956 ORTHO05D006284 1.6e-28 130.6 143 53.8
CSS0023047 Camellia sinensis var. sinensis HOM05D004956 ORTHO05D006284 1.6e-28 130.6 143 53.8
PSO339G2830 Papaver somniferum HOM05D004956 ORTHO05D006284 1.6e-28 130.6 223 42.2
Gohir.D02G003500 Gossypium hirsutum HOM05D004956 ORTHO05D006284 2.7e-28 129.8 159 62.9
ATR1127G197 Amborella trichopoda HOM05D004956 ORTHO05D006284 6.0e-28 128.6 194 42.8
CsaV3_4G027190 Cucumis sativus L. HOM05D004956 ORTHO05D006284 2.3e-27 126.7 169 52.7
vmacro20371 Vaccinium macrocarpon HOM05D004956 ORTHO05D006284 3.0e-27 126.3 182 58.2
THA.LOC104806644 Tarenaya hassleriana HOM05D004956 ORTHO05D006284 1.9e-26 123.6 143 53.8
Glyma.09G274500 Glycine max HOM05D004956 ORTHO05D006284 4.3e-26 122.5 208 40.9
PSO017G3746 Papaver somniferum HOM05D004956 ORTHO05D006284 4.3e-26 122.5 216 42.1
FvH4_6g09820 Fragaria vesca HOM05D004956 ORTHO05D006284 1.3e-25 120.9 164 45.1
FAN14G5820 Fragaria x ananassa HOM05D004956 ORTHO05D006284 1.3e-25 120.9 164 45.1
TAR636G3595 Trochodendron aralioides HOM05D004956 ORTHO05D006284 4.8e-25 119.0 150 46.7
CDE07G0884 Ceratophyllum demersum HOM05D004956 ORTHO05D006284 4.1e-24 115.9 176 43.2
SalBow5G5006 Salvia bowleyana HOM05D004956 ORTHO05D006284 9.0e-24 114.8 197 41.1
Glyma.07G108500 Glycine max HOM05D004956 ORTHO05D006284 1.2e-23 114.4 177 41.8
Zm00001eb058540 Zea mays HOM05D005147 ORTHO05D006132 1.2e-23 114.4 183 40.4
Zm00001eb149540 Zea mays HOM05D004956 ORTHO05D006284 5.9e-23 112.1 172 40.7
Os01g0821700 Oryza sativa ssp. japonica HOM05D004956 ORTHO05D006284 1.3e-22 110.9 196 37.8
Duzib151G0737 Durio zibethinus HOM05D004956 ORTHO05D006284 2.2e-22 110.2 217 39.2
PSO170G1670 Papaver somniferum HOM05D004956 ORTHO05D006284 2.2e-22 110.2 209 40.2
Zm00001eb368840 Zea mays HOM05D004956 ORTHO05D006284 3.8e-22 109.4 163 41.7
Thecc.04G151200 Theobroma cacao HOM05D004956 ORTHO05D006284 6.5e-22 108.6 183 43.2
Potri.016G137200 Populus trichocarpa HOM05D004956 ORTHO05D006284 4.8e-17 92.4 216 35.6
Mapoly0006s0095 Marchantia polymorpha HOM05D004956 ORTHO05D006284 3.8e-14 82.8 198 33.8
Actinidia29031 Actinidia chinensis HOM05D004956 ORTHO05D006284 5.5e-13 79.0 59 64.4
CDE06G1356 Ceratophyllum demersum HOM05D004956 ORTHO05D006284 1.2e-12 77.8 218 33.9
TPR.G14115 Trifolium pratense HOM05D004956 ORTHO05D006284 1.6e-12 77.4 121 40.5
COL.COLO4_09227 Corchorus olitorius HOM05D004956 ORTHO05D006284 1.4e-11 74.3 154 37.0
HPP92_007533 Vanilla planifolia HOM05D004956 ORTHO05D006284 2.6e-10 70.1 143 37.1
SMO356G0722 Selaginella moellendorffii HOM05D004956 ORTHO05D006284 2.2e-09 67.0 164 31.7
SEGI_23067 Sequoiadendron giganteum HOM05D004956 ORTHO05D006284 4.8e-09 65.9 175 29.1
Pp3c21_18160 Physcomitrium patens HOM05D004956 ORTHO05D005235 5.9e-07 58.9 48 60.4
CBR_g47126 Chara braunii HOM05D004956 ORTHO05D006284 1.3e-06 57.8 186 29.6
AagrBONN_evm.TU.Sc2ySwM_362.797 Anthoceros agrestis HOM05D004956 ORTHO05D006284 2.9e-06 56.6 182 26.9
Pp3c19_13340 Physcomitrium patens HOM05D004956 ORTHO05D006284 5.0e-06 55.8 48 60.4


User provided reference genes

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