Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3A925T73 Lonicera japonica HOM05D006601 ORTHO05D008281 3.3e-86 322.0 206 100.0
CSS0000414 Camellia sinensis var. sinensis HOM05D006601 ORTHO05D008281 3.9e-63 245.4 155 77.4
Cfa010329 Carpinus fangiana HOM05D006601 ORTHO05D008281 3.9e-63 245.4 149 81.9
vmacro10311 Vaccinium macrocarpon HOM05D006601 ORTHO05D008281 3.9e-63 245.4 174 73.6
Rhsim09G0141800 Rhododendron simsii HOM05D006601 ORTHO05D008281 2.6e-62 242.7 150 82.0
CiPaw.13G041000 Carya illinoinensis HOM05D006601 ORTHO05D008281 7.4e-62 241.1 147 80.3
QL04p046797 Quercus lobata HOM05D006601 ORTHO05D008281 7.4e-62 241.1 151 80.1
QL04p047245 Quercus lobata HOM05D006601 ORTHO05D008281 7.4e-62 241.1 151 80.1
Lsat_1_v5_gn_0_8161 Lactuca sativa HOM05D006601 ORTHO05D008281 9.7e-62 240.7 144 80.6
Atru.chr12.1047 Acer truncatum HOM05D006601 ORTHO05D008281 4.8e-61 238.4 154 76.6
Prupe.5G030400 Prunus persica HOM05D006601 ORTHO05D008281 4.8e-61 238.4 155 75.5
RcHm_v2.0_Chr6g0269151 Rosa chinensis HOM05D006601 ORTHO05D008281 1.4e-60 236.9 154 74.0
GSVIVG01010682001 Vitis vinifera HOM05D006601 ORTHO05D008281 1.4e-60 236.9 150 79.3
Dinv12840 Davidia involucrata HOM05D006601 ORTHO05D008281 1.8e-60 236.5 153 76.5
TAR633G2162 Trochodendron aralioides HOM05D006601 ORTHO05D008281 1.2e-59 233.8 153 75.2
ECA232G0968 Erigeron canadensis HOM05D006601 ORTHO05D008281 3.4e-59 232.3 138 81.9
Lalb_Chr10g0098441 Lupinus albus HOM05D006601 ORTHO05D008281 3.4e-59 232.3 154 77.3
MD06G1038200 Malus domestica HOM05D006601 ORTHO05D008281 5.9e-59 231.5 154 73.4
HanXRQChr11g0321661 Helianthus annuus HOM05D006601 ORTHO05D008281 1.3e-58 230.3 151 77.5
Phvul.002G091600 Phaseolus vulgaris HOM05D006601 ORTHO05D008281 1.3e-58 230.3 154 74.7
Duzib114G0052 Durio zibethinus HOM05D006601 ORTHO05D008281 2.2e-58 229.6 144 75.7
Gohir.A05G287400 Gossypium hirsutum HOM05D006601 ORTHO05D008281 2.9e-58 229.2 144 76.4
Glyma.01G052400 Glycine max HOM05D006601 ORTHO05D008281 3.8e-58 228.8 154 74.0
Nitab4.5_0009484g0010 Nicotiana tabacum HOM05D006601 ORTHO05D008281 3.8e-58 228.8 156 73.7
CAN.G1417.5 Capsicum annuum HOM05D006601 ORTHO05D008281 5.0e-58 228.4 156 73.7
Potri.010G240300 Populus trichocarpa HOM05D006601 ORTHO05D008281 5.0e-58 228.4 152 74.3
RcHm_v2.0_Chr2g0160691 Rosa chinensis HOM05D006601 ORTHO05D008281 1.1e-57 227.3 151 72.2
DCAR_006335 Daucus carota HOM05D006601 ORTHO05D008281 1.4e-57 226.9 138 76.8
Glyma.02G110700 Glycine max HOM05D006601 ORTHO05D008281 1.4e-57 226.9 154 72.7
Gohir.D05G288500 Gossypium hirsutum HOM05D006601 ORTHO05D008281 1.4e-57 226.9 144 75.0
Gorai.009G303600 Gossypium raimondii HOM05D006601 ORTHO05D008281 1.4e-57 226.9 144 75.0
Thecc.10G114200 Theobroma cacao HOM05D006601 ORTHO05D008281 1.9e-57 226.5 144 76.4
Potri.008G019100 Populus trichocarpa HOM05D006601 ORTHO05D008281 2.5e-57 226.1 139 77.0
Cc02_g09570 Coffea canephora HOM05D006601 ORTHO05D008281 7.2e-57 224.6 155 72.9
Lj2g0012177 Lotus japonicus HOM05D006601 ORTHO05D008281 7.2e-57 224.6 154 74.7
Solyc11g006760.3 Solanum lycopersicum HOM05D006601 ORTHO05D008281 7.2e-57 224.6 155 72.9
arahy.Tifrunner.gnm1.ann1.VBS9AQ Arachis hypogaea HOM05D006601 ORTHO05D008281 2.1e-56 223.0 155 72.3
FvH4_2g10940 Fragaria vesca HOM05D006601 ORTHO05D008281 2.1e-56 223.0 154 71.4
FAN24G1745 Fragaria x ananassa HOM05D006601 ORTHO05D008281 2.1e-56 223.0 154 71.4
Manes.10G062700 Manihot esculenta HOM05D006601 ORTHO05D008281 2.1e-56 223.0 151 74.2
Peaxi162Scf00125g00234 Petunia axillaris HOM05D006601 ORTHO05D008281 2.1e-56 223.0 129 81.4
Sopen11g002690 Solanum pennellii HOM05D006601 ORTHO05D008281 2.7e-56 222.6 155 72.3
PGSC0003DMG400023966 Solanum tuberosum HOM05D006601 ORTHO05D008281 2.7e-56 222.6 150 74.7
ClCG08G008320 Citrullus lanatus HOM05D006601 ORTHO05D008281 3.6e-56 222.2 147 76.2
PSO339G2358 Papaver somniferum HOM05D006601 ORTHO05D008281 3.6e-56 222.2 155 71.0
Eucgr.J00269 Eucalyptus grandis HOM05D006601 ORTHO05D008281 4.7e-56 221.9 148 76.4
MBI17_g13115_MAGBIO Magnolia biondii HOM05D006601 ORTHO05D008281 6.1e-56 221.5 152 73.7
Medtr5g042160 Medicago truncatula HOM05D006601 ORTHO05D008281 6.1e-56 221.5 146 74.7
Oeu030223.2 Olea europaea HOM05D006601 ORTHO05D008281 7.9e-56 221.1 150 74.7
SGA_v2.0_scaffold62G21313 Striga asiatica HOM05D006601 ORTHO05D008281 1.8e-55 219.9 142 80.3
Oeu026608.1 Olea europaea HOM05D006601 ORTHO05D008281 3.0e-55 219.2 150 74.7
Psat2g116120 Pisum sativum HOM05D006601 ORTHO05D008281 3.9e-55 218.8 154 72.1
TWI38G1517 Tripterygium wilfordii HOM05D006601 ORTHO05D008281 3.9e-55 218.8 149 71.1
MSTRG.9054 Avicennia marina HOM05D006601 ORTHO05D008281 6.7e-55 218.0 155 70.3
COL.COLO4_03655 Corchorus olitorius HOM05D006601 ORTHO05D008281 6.7e-55 218.0 139 77.0
Ca_04833_v3 Cicer arietinum L. HOM05D006601 ORTHO05D008281 8.8e-55 217.6 145 73.1
CsaV3_6G004290 Cucumis sativus L. HOM05D006601 ORTHO05D008281 5.7e-54 214.9 150 72.0
Migut.F00866 Erythranthe guttata HOM05D006601 ORTHO05D008281 5.7e-54 214.9 155 72.3
THA.LOC104823558 Tarenaya hassleriana HOM05D006601 ORTHO05D008281 5.7e-54 214.9 152 69.7
MELO3C019900.2 Cucumis melo HOM05D006601 ORTHO05D008281 7.4e-54 214.5 150 72.7
TWI63G1188 Tripterygium wilfordii HOM05D006601 ORTHO05D008281 9.7e-54 214.2 135 75.6
AL5G32810 Arabidopsis lyrata HOM05D006601 ORTHO05D008281 4.8e-53 211.8 138 72.5
AT3G52220 Arabidopsis thaliana HOM05D006601 ORTHO05D008281 4.8e-53 211.8 138 72.5
Thhalv10010678m.g Eutrema salsugineum HOM05D006601 ORTHO05D008281 4.8e-53 211.8 138 73.2
SalBow3G0796 Salvia bowleyana HOM05D006601 ORTHO05D008281 4.8e-53 211.8 141 74.5
Sp5g10040 Schrenkiella parvula HOM05D006601 ORTHO05D008281 4.8e-53 211.8 138 73.2
Sed0022988 Sechium edule HOM05D006601 ORTHO05D008281 4.8e-53 211.8 151 73.5
Hund22273 Selenicereus undatus HOM05D006601 ORTHO05D008281 4.8e-53 211.8 140 72.1
TPR.G31604 Trifolium pratense HOM05D006601 ORTHO05D008281 8.2e-53 211.1 119 85.7
Aqoxy2G01120 Aquilegia oxysepala HOM05D006601 ORTHO05D008281 1.1e-52 210.7 157 70.1
Carub.0005s1858 Capsella rubella HOM05D006601 ORTHO05D008281 1.4e-52 210.3 138 71.7
A09p45280 Brassica napus HOM05D006601 ORTHO05D008281 3.1e-52 209.1 162 64.2
BraA09t39991Z Brassica rapa HOM05D006601 ORTHO05D008281 3.1e-52 209.1 162 64.2
CARHR161980 Cardamine hirsuta HOM05D006601 ORTHO05D008281 3.1e-52 209.1 138 71.7
Ciclev10016593m.g Citrus clementina HOM05D006601 ORTHO05D008281 3.1e-52 209.1 143 73.4
PGR044G2546 Punica granatum HOM05D006601 ORTHO05D008281 4.1e-52 208.8 131 74.0
C08p27460 Brassica napus HOM05D006601 ORTHO05D008281 9.1e-52 207.6 163 63.2
BolC8t50363H Brassica oleracea HOM05D006601 ORTHO05D008281 9.1e-52 207.6 163 63.2
AUR62041519 Chenopodium quinoa HOM05D006601 ORTHO05D008281 1.2e-51 207.2 132 77.3
HPP92_000012 Vanilla planifolia HOM05D006601 ORTHO05D008281 7.7e-51 204.5 141 72.3
Os08g0558700 Oryza sativa ssp. japonica HOM05D006601 ORTHO05D008281 1.3e-50 203.8 150 68.0
FAN15G0841 Fragaria x ananassa HOM05D006601 ORTHO05D008281 1.5e-49 200.3 155 67.1
Sabra10G0188100 Salix brachista HOM05D006601 ORTHO05D008281 4.2e-49 198.7 214 50.5
FAN20G1775 Fragaria x ananassa HOM05D006601 ORTHO05D008281 1.6e-48 196.8 154 67.5
Aa31LG10G7330 Aethionema arabicum HOM05D006601 ORTHO05D008281 2.1e-48 196.4 120 77.5
unitig_899.g14469 Utricularia gibba HOM05D006601 ORTHO05D008281 2.7e-48 196.1 122 79.5
Nn6g34864 Nelumbo nucifera HOM05D006601 ORTHO05D008281 3.6e-48 195.7 117 80.3
ATR0776G086 Amborella trichopoda HOM05D006601 ORTHO05D008281 5.2e-47 191.8 141 65.2
arahy.Tifrunner.gnm1.ann1.0XG3CD Arachis hypogaea HOM05D006601 ORTHO05D008281 2.0e-46 189.9 154 65.6
Haze_03300 Corylus avellana HOM05D006601 ORTHO05D008281 5.3e-44 181.8 120 79.2
SEGI_26123 Sequoiadendron giganteum HOM05D006601 ORTHO05D008281 1.6e-43 180.3 121 70.2
Nitab4.5_0002586g0010 Nicotiana tabacum HOM05D006601 ORTHO05D008281 6.8e-39 164.9 128 69.5
Sc09g0005300 Simmondsia chinensis HOM05D006601 ORTHO05D008281 1.7e-37 160.2 128 66.4
BcaC07g39592 Brassica carinata HOM05D006601 ORTHO05D008281 3.1e-36 156.0 183 48.6
Pp3c1_22490 Physcomitrium patens HOM05D006601 ORTHO05D008281 9.1e-36 154.5 124 62.9
Mapoly0044s0087 Marchantia polymorpha HOM05D006601 ORTHO05D008281 2.3e-34 149.8 156 49.4
SMO367G0990 Selaginella moellendorffii HOM05D006601 ORTHO05D008281 1.1e-33 147.5 151 55.6
AUR62042084 Chenopodium quinoa HOM05D006601 ORTHO05D008281 7.2e-33 144.8 115 66.1
CDE04G0959 Ceratophyllum demersum HOM05D006601 ORTHO05D008281 6.1e-32 141.7 155 49.7
Actinidia31106 Actinidia chinensis HOM05D006601 ORTHO05D008281 8.0e-32 141.4 76 88.2
PSO692G0001 Papaver somniferum HOM05D006601 ORTHO05D008281 4.9e-29 132.1 109 65.1
PSO801G0555 Papaver somniferum HOM05D006601 ORTHO05D008281 4.9e-29 132.1 109 65.1
Ah.06g186680 Amaranthus hybridus HOM05D006601 ORTHO05D008281 5.2e-23 112.1 70 78.6
MCO05G050 Micromonas commoda HOM05D006601 ORTHO05D008281 5.2e-23 112.1 121 53.7
CiPaw.14G033700 Carya illinoinensis HOM05D006601 ORTHO05D008281 5.8e-22 108.6 65 86.2
Cre18.g749347 Chlamydomonas reinhardtii HOM05D006601 ORTHO05D008281 2.9e-21 106.3 135 45.9
Aqoxy2G01116 Aquilegia oxysepala HOM05D006601 ORTHO05D008281 8.3e-21 104.8 85 68.2
Zm00001eb039400 Zea mays HOM05D006601 ORTHO05D008281 2.7e-19 99.8 83 62.7
Lsat_1_v5_gn_4_8660 Lactuca sativa HOM05D006601 ORTHO05D008281 3.1e-15 86.3 55 78.2
Cfa024623 Carpinus fangiana HOM05D006601 ORTHO05D008281 9.8e-14 81.3 100 43.0
Hma1.2p1_1491F.1_g286720 Hydrangea macrophylla HOM05D006601 ORTHO05D008281 2.3e-10 70.1 37 89.2
BcaC02g09271 Brassica carinata HOM05D006601 ORTHO05D008281 6.6e-10 68.6 85 54.1
EL10Ac7g17292 Beta vulgaris HOM05D006601 ORTHO05D008281 4.3e-09 65.9 30 86.7
Aqoxy2G01117 Aquilegia oxysepala HOM05D006601 ORTHO05D008281 3.6e-08 62.8 30 80.0
AagrBONN_evm.TU.Sc2ySwM_228.2727 Anthoceros agrestis HOM05D006601 ORTHO05D008281 4.7e-08 62.4 77 46.8


User provided reference genes

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