Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3A923T60 Lonicera japonica HOM05D006018 ORTHO05D007545 1.2e-205 719.5 361 100.0
TAR623G0250 Trochodendron aralioides HOM05D006018 ORTHO05D007545 1.4e-119 433.7 262 81.3
Dinv08587 Davidia involucrata HOM05D006018 ORTHO05D007545 7.0e-116 421.4 265 78.1
Nn6g34699 Nelumbo nucifera HOM05D006018 ORTHO05D007545 4.6e-115 418.7 265 77.0
CSS0019594 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 1.1e-113 414.1 280 72.9
CSS0043702 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 2.5e-113 412.9 277 73.6
MD07G1062200 Malus domestica HOM05D006018 ORTHO05D007545 7.3e-113 411.4 248 78.6
CSS0004952 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 6.2e-112 408.3 278 73.0
PSO384G0865 Papaver somniferum HOM05D006018 ORTHO05D007545 1.0e-111 407.5 265 74.7
Lj6g0008960 Lotus japonicus HOM05D006018 ORTHO05D007545 6.8e-111 404.8 265 75.5
PGR044G0766 Punica granatum HOM05D006018 ORTHO05D007545 1.2e-110 404.1 277 72.6
Cfa010526 Carpinus fangiana HOM05D007060 ORTHO05D009087 2.0e-110 403.3 279 71.7
CiPaw.13G043500 Carya illinoinensis HOM05D006018 ORTHO05D007545 2.6e-110 402.9 279 71.0
PSO339G6589 Papaver somniferum HOM05D006018 ORTHO05D007545 4.4e-110 402.1 265 73.6
Psat6g049120 Pisum sativum HOM05D006018 ORTHO05D007545 5.8e-110 401.7 266 73.7
Prupe.2G072000 Prunus persica HOM05D006018 ORTHO05D007545 5.8e-110 401.7 248 76.6
TPR.G19796 Trifolium pratense HOM05D006018 ORTHO05D007545 5.8e-110 401.7 266 74.4
Atru.chr12.1071 Acer truncatum HOM05D006018 ORTHO05D007545 2.2e-109 399.8 261 75.1
Aqoxy1G00667 Aquilegia oxysepala HOM05D006018 ORTHO05D007545 2.2e-109 399.8 266 73.7
MD02G1258600 Malus domestica HOM05D006018 ORTHO05D007545 4.9e-109 398.7 248 75.8
PGSC0003DMG401001978 Solanum tuberosum HOM05D006018 ORTHO05D007545 4.9e-109 398.7 278 69.8
Nitab4.5_0007799g0030 Nicotiana tabacum HOM05D006018 ORTHO05D007545 8.3e-109 397.9 278 70.9
Migut.F00847 Erythranthe guttata HOM05D006018 ORTHO05D007545 1.1e-108 397.5 261 74.3
Lalb_Chr19g0128951 Lupinus albus HOM05D006018 ORTHO05D007545 1.4e-108 397.1 264 74.2
Ca_12272_v3 Cicer arietinum L. HOM05D006018 ORTHO05D007545 1.9e-108 396.7 266 74.1
HanXRQChr02g0053551 Helianthus annuus HOM05D006018 ORTHO05D007545 1.9e-108 396.7 278 72.3
Solyc11g006550.3 Solanum lycopersicum HOM05D006018 ORTHO05D007545 2.4e-108 396.4 287 67.9
Sopen11g002450 Solanum pennellii HOM05D006018 ORTHO05D007545 3.2e-108 396.0 287 68.3
DCAR_004552 Daucus carota HOM05D006018 ORTHO05D007545 4.1e-108 395.6 260 75.4
ECA238G1473 Erigeron canadensis HOM05D006018 ORTHO05D007545 5.4e-108 395.2 276 71.0
Ciclev10016037m.g Citrus clementina HOM05D006018 ORTHO05D007545 7.0e-108 394.8 262 74.0
Medtr1g048370 Medicago truncatula HOM05D006018 ORTHO05D007545 9.2e-108 394.4 283 69.6
TWI38G2380 Tripterygium wilfordii HOM05D006018 ORTHO05D007545 1.6e-107 393.7 283 70.3
Gorai.012G019800 Gossypium raimondii HOM05D006018 ORTHO05D007545 4.6e-107 392.1 266 74.1
CAN.G143.25 Capsicum annuum HOM05D006018 ORTHO05D007545 1.7e-106 390.2 259 72.6
Gohir.D04G017100 Gossypium hirsutum HOM05D006018 ORTHO05D007545 1.7e-106 390.2 266 73.3
CANSAT56G4342 Cannabis sativa HOM05D006018 ORTHO05D007545 1.1e-105 387.5 282 67.4
Eucgr.J00283 Eucalyptus grandis HOM05D006018 ORTHO05D007545 1.5e-105 387.1 280 69.3
FAN10G2047 Fragaria x ananassa HOM05D006018 ORTHO05D007545 1.9e-105 386.7 248 75.8
Gohir.A05G398800 Gossypium hirsutum HOM05D006018 ORTHO05D007545 1.9e-105 386.7 256 75.0
Peaxi162Scf00725g00522 Petunia axillaris HOM05D006018 ORTHO05D007545 1.9e-105 386.7 279 68.5
FvH4_7g03231 Fragaria vesca HOM05D006018 ORTHO05D007545 5.6e-105 385.2 281 68.3
Thecc.10G116100 Theobroma cacao HOM05D006018 ORTHO05D007545 7.3e-105 384.8 256 75.0
Cpa.g.sc54.21 Carica papaya HOM05D006018 ORTHO05D007545 1.2e-104 384.0 280 69.6
arahy.Tifrunner.gnm1.ann1.QNY1I5 Arachis hypogaea HOM05D006018 ORTHO05D007545 2.1e-104 383.3 250 73.2
Lsat_1_v5_gn_2_105841 Lactuca sativa HOM05D006018 ORTHO05D007545 3.6e-104 382.5 245 76.7
COL.COLO4_07822 Corchorus olitorius HOM05D006018 ORTHO05D007545 1.4e-103 380.6 283 68.6
Sabra10G0189600 Salix brachista HOM05D006018 ORTHO05D007545 1.4e-103 380.6 268 72.4
GSVIVG01034634001 Vitis vinifera HOM05D006018 ORTHO05D007545 1.8e-103 380.2 264 69.7
arahy.Tifrunner.gnm1.ann1.Z7U9ST Arachis hypogaea HOM05D006018 ORTHO05D007545 3.1e-103 379.4 273 68.9
MELO3C012335.2 Cucumis melo HOM05D006018 ORTHO05D007545 3.1e-103 379.4 261 73.6
arahy.Tifrunner.gnm1.ann1.Z71440 Arachis hypogaea HOM05D006018 ORTHO05D007545 6.8e-103 378.3 265 70.6
SalBow3G1532 Salvia bowleyana HOM05D006018 ORTHO05D007545 8.9e-103 377.9 270 68.5
Potri.010G242600 Populus trichocarpa HOM05D006018 ORTHO05D007545 1.2e-102 377.5 266 71.8
RcHm_v2.0_Chr1g0325281 Rosa chinensis HOM05D006018 ORTHO05D007545 1.5e-102 377.1 243 74.5
Duzib106G1265 Durio zibethinus HOM05D006018 ORTHO05D007545 2.6e-102 376.3 256 71.9
Phvul.007G234300 Phaseolus vulgaris HOM05D006018 ORTHO05D007545 2.6e-102 376.3 282 66.7
arahy.Tifrunner.gnm1.ann1.V4FSHN Arachis hypogaea HOM05D006018 ORTHO05D007545 3.4e-102 375.9 281 66.5
Glyma.10G121524 Glycine max HOM05D006018 ORTHO05D007545 9.8e-102 374.4 266 69.5
CsaV3_5G035210 Cucumis sativus L. HOM05D006018 ORTHO05D007545 1.7e-101 373.6 285 68.4
EL10Ac4g08718 Beta vulgaris HOM05D006018 ORTHO05D007545 2.2e-101 373.2 268 67.5
VMungo0720G2948 Vigna mungo HOM05D006018 ORTHO05D007545 2.2e-101 373.2 282 66.7
Nitab4.5_0001781g0180 Nicotiana tabacum HOM05D006018 ORTHO05D007545 2.9e-101 372.9 278 68.0
SGA_v2.0_scaffold2G01315 Striga asiatica HOM05D006018 ORTHO05D007545 3.7e-101 372.5 258 70.5
Hund06805 Selenicereus undatus HOM05D006018 ORTHO05D007545 4.1e-100 369.0 262 69.8
Sed0014972 Sechium edule HOM05D006018 ORTHO05D007545 7.1e-100 368.2 274 69.0
Carub.0002s0907 Capsella rubella HOM05D006018 ORTHO05D007545 2.1e-99 366.7 281 65.8
Glyma.20G072400 Glycine max HOM05D006018 ORTHO05D007545 2.1e-99 366.7 282 64.9
AL1G64680 Arabidopsis lyrata HOM05D006018 ORTHO05D007545 3.5e-99 365.9 281 66.2
CARHR103400 Cardamine hirsuta HOM05D006018 ORTHO05D007545 6.0e-99 365.2 281 65.1
Manes.10G059900 Manihot esculenta HOM05D006018 ORTHO05D007545 6.0e-99 365.2 261 67.8
AUR62034490 Chenopodium quinoa HOM05D006018 ORTHO05D007545 7.8e-99 364.8 261 67.8
MSTRG.9035 Avicennia marina HOM05D006018 ORTHO05D007545 1.3e-98 364.0 258 68.2
Aa31LG2G1810 Aethionema arabicum HOM05D006018 ORTHO05D007545 6.6e-98 361.7 282 64.9
AT2G26230 Arabidopsis thaliana HOM05D006018 ORTHO05D007545 8.6e-98 361.3 281 64.8
Cc02_g09390 Coffea canephora HOM05D006018 ORTHO05D007545 8.6e-98 361.3 277 66.1
Haze_03464 Corylus avellana HOM05D006018 ORTHO05D007545 1.5e-97 360.5 357 55.7
Thhalv10021194m.g Eutrema salsugineum HOM05D006018 ORTHO05D007545 5.6e-97 358.6 279 64.2
Ah.06g186820 Amaranthus hybridus HOM05D006018 ORTHO05D007545 3.1e-95 352.8 290 60.3
C07p13770 Brassica napus HOM05D006018 ORTHO05D007545 3.1e-95 352.8 276 64.5
CDE02G2990 Ceratophyllum demersum HOM05D006018 ORTHO05D007545 3.1e-95 352.8 270 64.1
BraA07t28684Z Brassica rapa HOM05D006018 ORTHO05D007545 5.2e-95 352.1 275 64.7
BcaC06g35533 Brassica carinata HOM05D006018 ORTHO05D007545 6.8e-95 351.7 276 64.1
THA.LOC104801755 Tarenaya hassleriana HOM05D006018 ORTHO05D007545 8.9e-95 351.3 281 61.2
THA.LOC104804947 Tarenaya hassleriana HOM05D006018 ORTHO05D007545 8.9e-95 351.3 281 61.2
BcaB06g26497 Brassica carinata HOM05D006018 ORTHO05D007545 1.2e-94 350.9 282 63.1
BolC7t41872H Brassica oleracea HOM05D006018 ORTHO05D007545 1.2e-94 350.9 276 64.5
FAN01G2803 Fragaria x ananassa HOM05D006018 ORTHO05D007545 1.2e-94 350.9 250 70.4
A07p08930 Brassica napus HOM05D006018 ORTHO05D007545 1.5e-94 350.5 275 64.4
RcHm_v2.0_Chr1g0325311 Rosa chinensis HOM05D006018 ORTHO05D007545 3.4e-94 349.4 289 61.9
Sp3g21150 Schrenkiella parvula HOM05D006018 ORTHO05D007545 5.8e-94 348.6 282 62.8
SpUn0047_0030 Schrenkiella parvula HOM05D006018 ORTHO05D007545 5.8e-94 348.6 282 62.8
THA.LOC104823771 Tarenaya hassleriana HOM05D006018 ORTHO05D007545 5.8e-94 348.6 281 60.1
ClCG05G021930 Citrullus lanatus HOM05D006018 ORTHO05D007545 4.1e-92 342.4 274 66.8
vmacro10321 Vaccinium macrocarpon HOM05D006018 ORTHO05D007545 4.1e-92 342.4 302 59.9
unitig_899.g14460 Utricularia gibba HOM05D006018 ORTHO05D007545 4.3e-89 332.4 285 59.3
ATR0772G096 Amborella trichopoda HOM05D006018 ORTHO05D007545 1.1e-87 327.8 260 62.3
Zm00001eb146880 Zea mays HOM05D006018 ORTHO05D007545 1.1e-87 327.8 278 57.2
Rhsim09G0141100 Rhododendron simsii HOM05D006018 ORTHO05D007545 1.3e-85 320.9 235 67.2
Hma1.2p1_0381F.1_g139980 Hydrangea macrophylla HOM05D006018 ORTHO05D007545 1.2e-83 314.3 197 77.7
Nn2g14297 Nelumbo nucifera HOM05D006018 ORTHO05D007545 3.5e-83 312.8 262 62.2
Actinidia34731 Actinidia chinensis HOM05D006018 ORTHO05D007545 1.3e-82 310.8 218 71.1
FAN03G1346 Fragaria x ananassa HOM05D006018 ORTHO05D007545 3.3e-81 306.2 224 68.8
HPP92_027461 Vanilla planifolia HOM05D006018 ORTHO05D007545 9.3e-76 288.1 213 64.8
SMO134G0227 Selaginella moellendorffii HOM05D006018 ORTHO05D007545 1.9e-73 280.4 268 56.0
AUR62034169 Chenopodium quinoa HOM05D006018 ORTHO05D007545 8.1e-72 275.0 197 67.0
Mapoly0079s0008 Marchantia polymorpha HOM05D006018 ORTHO05D007545 1.7e-69 267.3 251 53.8
Pp3c14_15560 Physcomitrium patens HOM05D006018 ORTHO05D007545 3.0e-66 256.5 260 51.2
Sc09g0005130 Simmondsia chinensis HOM05D006018 ORTHO05D007545 4.3e-65 252.7 181 66.9
QL04p047894 Quercus lobata HOM05D006018 ORTHO05D007545 2.4e-63 246.9 166 73.5
AagrBONN_evm.TU.Sc2ySwM_344.453 Anthoceros agrestis HOM05D006018 ORTHO05D007545 1.3e-58 231.1 266 47.7
CBR_g20325 Chara braunii HOM05D006018 ORTHO05D007545 6.3e-56 222.2 179 58.1
Cre12.g504950 Chlamydomonas reinhardtii HOM05D006018 ORTHO05D007545 4.5e-54 216.1 254 45.3
Os01g0865100 Oryza sativa ssp. japonica HOM05D006018 ORTHO05D007545 1.9e-49 200.7 163 59.5
MCO08G151 Micromonas commoda HOM05D006018 ORTHO05D007545 1.5e-41 174.5 238 39.5
PRCOL_00005817 Prasinoderma coloniale HOM05D006018 ORTHO05D007545 2.2e-37 160.6 303 38.3
CSS0009212 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 3.6e-35 153.3 116 69.0
CSS0030296 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 8.8e-34 148.7 114 69.3
arahy.Tifrunner.gnm1.ann1.WX42FR Arachis hypogaea HOM05D006018 ORTHO05D007545 1.7e-32 144.4 123 62.6
arahy.Tifrunner.gnm1.ann1.BN00BV Arachis hypogaea HOM05D006018 ORTHO05D007545 3.1e-31 140.2 96 70.8
Eucgr.J00287 Eucalyptus grandis HOM05D006018 ORTHO05D007545 3.6e-19 100.1 58 75.9
SEGI_30163 Sequoiadendron giganteum HOM05D006018 ORTHO05D007545 1.8e-18 97.8 94 53.2
Hma1.2p1_0381F.1_g139990 Hydrangea macrophylla HOM05D006018 ORTHO05D007545 4.0e-18 96.7 58 72.4
SEGI_33218 Sequoiadendron giganteum HOM05D006018 ORTHO05D007545 4.4e-17 93.2 69 63.8
SEGI_30780 Sequoiadendron giganteum HOM05D006018 ORTHO05D007545 1.7e-16 91.3 64 65.6
Cfa010524 Carpinus fangiana HOM05D006018 ORTHO05D007545 2.2e-16 90.9 58 65.5
Oeu009248.1 Olea europaea HOM05D006018 ORTHO05D007545 5.4e-15 86.3 158 40.5
SEGI_29992 Sequoiadendron giganteum HOM05D006018 ORTHO05D007545 9.8e-09 65.5 62 56.5
Hma1.2p1_0381F.1_g139970 Hydrangea macrophylla HOM05D006018 ORTHO05D007545 1.6e-06 58.2 33 75.8
DCAR_021657 Daucus carota HOM05D000572 ORTHO05D002399 5.9e-06 56.2 76 50.0


User provided reference genes

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