Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3A921T38 Lonicera japonica HOM05D006565 ORTHO05D008717 1.1e-164 583.2 291 100.0
Actinidia34736 Actinidia chinensis HOM05D006565 ORTHO05D008717 4.3e-132 474.9 286 81.8
TAR636G0179 Trochodendron aralioides HOM05D006565 ORTHO05D008717 4.0e-130 468.4 285 80.4
ClCG05G021990 Citrullus lanatus HOM05D006565 ORTHO05D008717 1.4e-127 459.9 274 81.4
Eucgr.G02667 Eucalyptus grandis HOM05D006565 ORTHO05D008717 9.3e-127 457.2 274 81.0
Rhsim09G0140500 Rhododendron simsii HOM05D006565 ORTHO05D008717 1.6e-126 456.4 286 79.4
Thecc.10G119100 Theobroma cacao HOM05D006565 ORTHO05D008717 1.6e-126 456.4 271 81.2
vmacro10331 Vaccinium macrocarpon HOM05D006565 ORTHO05D008717 4.6e-126 454.9 291 78.7
CiPaw.14G036000 Carya illinoinensis HOM05D006565 ORTHO05D008717 1.3e-125 453.4 274 80.3
Dinv03812 Davidia involucrata HOM05D006565 ORTHO05D008717 2.3e-125 452.6 274 81.8
CsaV3_5G035170 Cucumis sativus L. HOM05D006565 ORTHO05D008717 3.0e-125 452.2 274 79.9
MELO3C012330.2 Cucumis melo HOM05D006565 ORTHO05D008717 1.1e-124 450.3 274 79.6
Atru.chr12.1084 Acer truncatum HOM05D006565 ORTHO05D008717 3.3e-124 448.7 271 80.1
Glyma.20G195000 Glycine max HOM05D006565 ORTHO05D008717 5.6e-124 448.0 285 76.1
Ciclev10015763m.g Citrus clementina HOM05D006565 ORTHO05D008717 9.6e-124 447.2 271 78.2
Lj5g0019410 Lotus japonicus HOM05D006565 ORTHO05D008717 9.6e-124 447.2 274 78.8
HanXRQChr08g0217341 Helianthus annuus HOM05D006565 ORTHO05D008717 1.6e-123 446.4 282 78.0
Duzib114G0050 Durio zibethinus HOM05D006565 ORTHO05D008717 2.1e-123 446.0 271 79.7
Cc02_g09290 Coffea canephora HOM05D006565 ORTHO05D008717 2.8e-123 445.7 274 78.1
Gohir.A05G286300 Gossypium hirsutum HOM05D006565 ORTHO05D008717 2.8e-123 445.7 272 77.9
ECA233G2794 Erigeron canadensis HOM05D006565 ORTHO05D008717 6.2e-123 444.5 282 76.6
Gohir.D05G287300 Gossypium hirsutum HOM05D006565 ORTHO05D008717 8.2e-123 444.1 272 77.9
Prupe.2G073700 Prunus persica HOM05D006565 ORTHO05D008717 1.1e-122 443.7 274 79.2
Aqoxy1G00616 Aquilegia oxysepala HOM05D006565 ORTHO05D008717 1.8e-122 443.0 272 80.1
Gorai.009G302300 Gossypium raimondii HOM05D006565 ORTHO05D008717 1.8e-122 443.0 272 77.9
HanXRQChr02g0049321 Helianthus annuus HOM05D006565 ORTHO05D008717 4.0e-122 441.8 272 78.7
QL04p048612 Quercus lobata HOM05D006565 ORTHO05D008717 5.3e-122 441.4 274 78.8
GSVIVG01034599001 Vitis vinifera HOM05D006565 ORTHO05D008717 1.2e-121 440.3 285 74.7
MD07G1062700 Malus domestica HOM05D006565 ORTHO05D008717 1.5e-121 439.9 271 79.3
Sed0004638 Sechium edule HOM05D006565 ORTHO05D008717 2.6e-121 439.1 274 78.8
Potri.010G243900 Populus trichocarpa HOM05D006565 ORTHO05D008717 3.4e-121 438.7 271 77.9
Ca_10426_v3 Cicer arietinum L. HOM05D006565 ORTHO05D008717 5.8e-121 438.0 279 76.7
Lalb_Chr06g0169851 Lupinus albus HOM05D006565 ORTHO05D008717 5.8e-121 438.0 274 77.0
Sc07g0003130 Simmondsia chinensis HOM05D006565 ORTHO05D008717 1.0e-120 437.2 281 75.8
TPR.G10259 Trifolium pratense HOM05D006565 ORTHO05D008717 1.3e-120 436.8 275 77.1
arahy.Tifrunner.gnm1.ann1.51BCJ8 Arachis hypogaea HOM05D006565 ORTHO05D008717 2.2e-120 436.0 279 76.7
Manes.10G059200 Manihot esculenta HOM05D006565 ORTHO05D008717 2.2e-120 436.0 271 78.2
arahy.Tifrunner.gnm1.ann1.V0HLME Arachis hypogaea HOM05D006565 ORTHO05D008717 3.8e-120 435.3 279 76.3
ATR0697G221 Amborella trichopoda HOM05D006565 ORTHO05D008717 4.9e-120 434.9 272 75.4
RhsimUnG0215000 Rhododendron simsii HOM05D006565 ORTHO05D008717 8.4e-120 434.1 345 67.0
PSO339G2240 Papaver somniferum HOM05D006565 ORTHO05D008717 2.5e-119 432.6 274 76.6
RcHm_v2.0_Chr1g0332191 Rosa chinensis HOM05D006565 ORTHO05D008717 3.2e-119 432.2 272 77.6
TWI15G0448 Tripterygium wilfordii HOM05D006565 ORTHO05D008717 1.6e-118 429.9 283 74.9
Lsat_1_v5_gn_8_21800 Lactuca sativa HOM05D006565 ORTHO05D008717 2.7e-118 429.1 285 74.0
Medtr1g090380 Medicago truncatula HOM05D006565 ORTHO05D008717 7.9e-118 427.6 276 76.1
MSTRG.9025 Avicennia marina HOM05D006565 ORTHO05D008717 1.0e-117 427.2 274 74.5
Migut.F00832 Erythranthe guttata HOM05D006565 ORTHO05D008717 1.3e-117 426.8 274 76.3
FvH4_7g05460 Fragaria vesca HOM05D006565 ORTHO05D008717 3.9e-117 425.2 273 75.5
Solyc11g006420.2 Solanum lycopersicum HOM05D006565 ORTHO05D008717 3.9e-117 425.2 274 75.5
SGA_v2.0_scaffold90G27708 Striga asiatica HOM05D006565 ORTHO05D008717 3.9e-117 425.2 288 74.7
CAN.G143.52 Capsicum annuum HOM05D006565 ORTHO05D008717 6.7e-117 424.5 285 72.6
Sopen11g002320 Solanum pennellii HOM05D006565 ORTHO05D008717 6.7e-117 424.5 274 75.2
VMungo0720G0186 Vigna mungo HOM05D006565 ORTHO05D008717 6.7e-117 424.5 307 70.0
Nn2g14368 Nelumbo nucifera HOM05D006565 ORTHO05D008717 8.7e-117 424.1 285 74.4
CANSAT56G1291 Cannabis sativa HOM05D006565 ORTHO05D008717 1.1e-116 423.7 281 73.7
PGSC0003DMG400014108 Solanum tuberosum HOM05D006565 ORTHO05D008717 1.5e-116 423.3 274 74.5
Os03g0648900 Oryza sativa ssp. japonica HOM05D006565 ORTHO05D008717 7.4e-116 421.0 271 74.2
Psat6g171600 Pisum sativum HOM05D006565 ORTHO05D008717 7.4e-116 421.0 279 73.1
COL.COLO4_10008 Corchorus olitorius HOM05D006565 ORTHO05D008717 1.6e-115 419.9 271 76.4
HPP92_013938 Vanilla planifolia HOM05D006565 ORTHO05D008717 1.6e-115 419.9 273 74.0
Peaxi162Scf00120g01317 Petunia axillaris HOM05D006565 ORTHO05D008717 8.2e-115 417.5 309 68.0
Dinv06042 Davidia involucrata HOM05D006565 ORTHO05D008717 2.4e-114 416.0 259 79.9
Sabra10G0190700 Salix brachista HOM05D006565 ORTHO05D008717 4.1e-114 415.2 313 66.5
AUR62034160 Chenopodium quinoa HOM05D006565 ORTHO05D008717 2.6e-113 412.5 273 72.5
EL10Ac4g08734 Beta vulgaris HOM05D006565 ORTHO05D008717 3.4e-113 412.1 272 74.6
THA.LOC104801973 Tarenaya hassleriana HOM05D006565 ORTHO05D008717 7.7e-113 411.0 278 72.3
A03p21520 Brassica napus HOM05D006565 ORTHO05D008717 1.3e-112 410.2 286 71.0
BraA03t11388Z Brassica rapa HOM05D006565 ORTHO05D008717 1.3e-112 410.2 286 71.0
CARHR133350 Cardamine hirsuta HOM05D006565 ORTHO05D008717 2.2e-112 409.5 278 72.3
BolC3t14938H Brassica oleracea HOM05D006565 ORTHO05D008717 6.5e-112 407.9 286 69.9
Carub.0004s2066 Capsella rubella HOM05D006565 ORTHO05D008717 1.9e-111 406.4 275 72.4
AUR62014278 Chenopodium quinoa HOM05D006565 ORTHO05D008717 3.2e-111 405.6 272 72.8
C03p25510 Brassica napus HOM05D006565 ORTHO05D008717 1.2e-110 403.7 286 69.6
Zm00001eb218510 Zea mays HOM05D006565 ORTHO05D008717 1.2e-110 403.7 271 70.8
Sp4g21020 Schrenkiella parvula HOM05D006565 ORTHO05D008717 1.6e-110 403.3 267 74.5
Nitab4.5_0001781g0210 Nicotiana tabacum HOM05D006565 ORTHO05D008717 1.8e-109 399.8 252 77.8
Thhalv10016992m.g Eutrema salsugineum HOM05D006565 ORTHO05D008717 3.3e-108 395.6 286 68.5
Phvul.007G137100 Phaseolus vulgaris HOM05D006565 ORTHO05D008717 8.2e-107 391.0 285 68.8
AT2G38680 Arabidopsis thaliana HOM05D006565 ORTHO05D008717 1.4e-106 390.2 276 69.9
CDE06G1733 Ceratophyllum demersum HOM05D006565 ORTHO05D008717 1.8e-106 389.8 271 70.8
Hund06810 Selenicereus undatus HOM05D006565 ORTHO05D008717 3.1e-106 389.0 285 69.5
Oeu009252.1 Olea europaea HOM05D006565 ORTHO05D008717 1.3e-104 383.6 294 68.0
FAN01G3085 Fragaria x ananassa HOM05D006565 ORTHO05D008717 2.0e-100 369.8 282 67.4
AagrBONN_evm.TU.Sc2ySwM_228.2835 Anthoceros agrestis HOM05D006565 ORTHO05D008717 6.3e-99 364.8 275 65.1
Prupe.2G074100 Prunus persica HOM05D006565 ORTHO05D008717 8.2e-99 364.4 218 81.2
FAN06G1903 Fragaria x ananassa HOM05D006565 ORTHO05D008717 1.1e-98 364.0 275 68.4
SMO367G1082 Selaginella moellendorffii HOM05D006565 ORTHO05D008717 1.2e-97 360.5 275 63.6
SEGI_36612 Sequoiadendron giganteum HOM05D006565 ORTHO05D008717 7.2e-95 351.3 249 67.9
Pp3c1_24570 Physcomitrium patens HOM05D006565 ORTHO05D008717 3.6e-94 349.0 273 63.4
FAN10G4168 Fragaria x ananassa HOM05D006565 ORTHO05D008717 6.1e-94 348.2 300 62.3
FAN21G0259 Fragaria x ananassa HOM05D006565 ORTHO05D008717 2.5e-87 326.2 232 70.7
Mapoly0082s0075 Marchantia polymorpha HOM05D006565 ORTHO05D008717 4.2e-87 325.5 250 62.8
Lj3A922G54 Lonicera japonica HOM05D006565 ORTHO05D008717 1.4e-85 320.5 157 100.0
AL4G35960 Arabidopsis lyrata HOM05D006565 ORTHO05D008717 5.2e-85 318.5 280 60.0
FvH4_1g27810 Fragaria vesca HOM05D006565 ORTHO05D008717 2.3e-77 293.1 253 62.8
PGSC0003DMG400001988 Solanum tuberosum HOM05D006565 ORTHO05D008717 4.0e-77 292.4 186 75.8
Nitab4.5_0016854g0010 Nicotiana tabacum HOM05D006565 ORTHO05D008717 3.4e-76 289.3 182 77.5
CBR_g36829 Chara braunii HOM05D006565 ORTHO05D001468 4.4e-76 288.9 383 42.6
Haze_03436 Corylus avellana HOM05D006565 ORTHO05D008717 2.7e-65 253.1 265 54.0
MBI05_g36782_MAGBIO Magnolia biondii HOM05D006565 ORTHO05D008717 2.9e-59 233.0 141 79.4
Sabra13G0091500 Salix brachista HOM05D006565 ORTHO05D008717 9.2e-58 228.0 150 73.3
Potri.008G015201 Populus trichocarpa HOM05D006565 ORTHO05D008717 1.6e-57 227.3 144 75.7
PSO384G3661 Papaver somniferum HOM05D006565 ORTHO05D008717 4.4e-52 209.1 133 75.9
Lj3A922G55 Lonicera japonica HOM05D006565 ORTHO05D008717 4.3e-47 192.6 111 87.4
FAN10G3234 Fragaria x ananassa HOM05D006565 ORTHO05D008717 1.1e-45 188.0 253 45.8
Glyma.10G195001 Glycine max HOM05D006565 ORTHO05D008717 2.2e-43 180.3 107 75.7
FAN03G2487 Fragaria x ananassa HOM05D006565 ORTHO05D008717 2.8e-38 163.3 186 51.1
FAN10G0629 Fragaria x ananassa HOM05D006565 ORTHO05D008717 3.6e-38 162.9 186 51.1
Hma1.2p1_0098F.1_g048200 Hydrangea macrophylla HOM05D006565 ORTHO05D008717 9.9e-36 154.8 90 81.1
Cpa.g.sc33.129 Carica papaya HOM05D006565 ORTHO05D008717 3.9e-32 142.9 89 73.0
Cpa.g.sc33.128 Carica papaya HOM05D006565 ORTHO05D008717 2.1e-30 137.1 82 78.0
CSS0040424 Camellia sinensis var. sinensis HOM05D006565 ORTHO05D008717 2.2e-27 127.1 66 84.8
Aqoxy6G01578 Aquilegia oxysepala HOM05D006565 ORTHO05D008717 9.0e-21 105.1 187 39.0
CSS0049814 Camellia sinensis var. sinensis HOM05D006565 ORTHO05D008717 9.9e-20 101.7 60 80.0
MBI15_g31580_MAGBIO Magnolia biondii HOM05D001433 ORTHO05D011977 3.0e-16 90.1 60 71.7
MBI08_g05402_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 8.7e-16 88.6 56 75.0
RhsimUnG0214900 Rhododendron simsii HOM05D006565 ORTHO05D008717 6.9e-13 79.0 61 65.6
MBI05_g33289_MAGBIO Magnolia biondii HOM05D006565 ORTHO05D008717 9.0e-13 78.6 57 66.7
MBI17_g02193_MAGBIO Magnolia biondii HOM05D006565 ORTHO05D011977 2.2e-11 73.9 44 79.5
Aqoxy6G01581 Aquilegia oxysepala HOM05D006565 ORTHO05D000596 7.1e-10 68.9 52 69.2
Psat7g239080 Pisum sativum HOM05D005767 ORTHO05D006785 6.0e-09 65.9 81 45.7
MBI06_g14037_MAGBIO Magnolia biondii HOM05D001433 ORTHO05D011977 6.7e-08 62.4 42 69.0
COL.COLO4_26864 Corchorus olitorius HOM05D002341 ORTHO05D003165 1.6e-06 57.8 34 70.6


User provided reference genes

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