Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3A909T48 Lonicera japonica HOM05D000974 ORTHO05D007456 4.8e-128 461.5 283 100.0
Dinv28331 Davidia involucrata HOM05D000974 ORTHO05D007456 1.9e-84 316.6 253 67.2
Ciclev10005489m.g Citrus clementina HOM05D000974 ORTHO05D007456 1.2e-81 307.4 270 61.9
Manes.06G157800 Manihot esculenta HOM05D000974 ORTHO05D007456 2.0e-81 306.6 272 61.4
TWI39G1278 Tripterygium wilfordii HOM05D000974 ORTHO05D007456 9.8e-81 304.3 279 60.2
Potri.015G021400 Populus trichocarpa HOM05D000974 ORTHO05D007456 2.9e-80 302.8 272 63.6
Potri.015G021100 Populus trichocarpa HOM05D000974 ORTHO05D007456 3.2e-79 299.3 279 62.0
MD07G1285800 Malus domestica HOM05D000974 ORTHO05D007456 2.0e-78 296.6 280 59.6
Actinidia34202 Actinidia chinensis HOM05D000974 ORTHO05D007456 4.6e-78 295.4 270 60.7
Thecc.03G193600 Theobroma cacao HOM05D000974 ORTHO05D007456 6.0e-78 295.0 271 60.1
FAN06G4709 Fragaria x ananassa HOM05D000974 ORTHO05D007456 1.0e-77 294.3 282 56.7
FAN03G2436 Fragaria x ananassa HOM05D000974 ORTHO05D006000 2.3e-77 293.1 282 56.4
FAN10G1776 Fragaria x ananassa HOM05D000974 ORTHO05D007456 2.3e-77 293.1 282 56.4
Prupe.2G308000 Prunus persica HOM05D000974 ORTHO05D002201 2.3e-77 293.1 272 59.6
RcHm_v2.0_Chr1g0380171 Rosa chinensis HOM05D000974 ORTHO05D007456 2.3e-77 293.1 282 57.1
DCAR_020306 Daucus carota HOM05D000974 ORTHO05D007456 3.0e-77 292.7 274 58.8
FvH4_7g31090 Fragaria vesca HOM05D000974 ORTHO05D007456 5.0e-77 292.0 282 56.4
FAN06G0673 Fragaria x ananassa HOM05D000974 ORTHO05D007456 5.0e-77 292.0 282 56.4
COL.COLO4_35640 Corchorus olitorius HOM05D000974 ORTHO05D007456 6.6e-77 291.6 269 58.4
FAN10G1818 Fragaria x ananassa HOM05D000974 ORTHO05D006000 1.9e-76 290.0 282 56.0
Potri.012G031000 Populus trichocarpa HOM05D000974 ORTHO05D007456 1.9e-76 290.0 280 59.3
PGR142G2075 Punica granatum HOM05D000974 ORTHO05D007456 1.9e-76 290.0 277 57.4
GSVIVG01028702001 Vitis vinifera HOM05D000974 ORTHO05D007456 2.8e-75 286.2 272 56.2
vmacro06564 Vaccinium macrocarpon HOM05D000974 ORTHO05D007456 4.7e-75 285.4 306 52.9
Nitab4.5_0005625g0010 Nicotiana tabacum HOM05D000974 ORTHO05D007456 1.2e-73 280.8 266 57.5
Cc02_g01830 Coffea canephora HOM05D000974 ORTHO05D007456 1.5e-73 280.4 278 55.8
Sabra12G0020600 Salix brachista HOM05D000974 ORTHO05D007456 2.6e-73 279.6 286 57.0
Nitab4.5_0002589g0050 Nicotiana tabacum HOM05D000974 ORTHO05D007456 7.5e-73 278.1 266 57.5
AUR62006147 Chenopodium quinoa HOM05D000974 ORTHO05D007456 9.8e-73 277.7 267 58.1
Ca_16682_v3 Cicer arietinum L. HOM05D000974 ORTHO05D007456 2.2e-72 276.6 267 55.8
EL10Ac3g05342 Beta vulgaris HOM05D000974 ORTHO05D007456 3.7e-72 275.8 284 55.3
Gohir.D09G178500 Gossypium hirsutum HOM05D000974 ORTHO05D007456 6.4e-72 275.0 271 54.6
arahy.Tifrunner.gnm1.ann1.D5FDUQ Arachis hypogaea HOM05D000974 ORTHO05D007456 1.4e-71 273.9 273 53.8
arahy.Tifrunner.gnm1.ann1.LG8YER Arachis hypogaea HOM05D000974 ORTHO05D007456 1.4e-71 273.9 273 53.8
Glyma.06G125900 Glycine max HOM05D000974 ORTHO05D007456 3.2e-71 272.7 268 54.1
Rhsim09G0204100 Rhododendron simsii HOM05D000974 ORTHO05D007456 3.2e-71 272.7 279 56.3
CANSAT21G0519 Cannabis sativa HOM05D000974 ORTHO05D007456 4.1e-71 272.3 272 55.5
Thhalv10005277m.g Eutrema salsugineum HOM05D000974 ORTHO05D007456 4.1e-71 272.3 273 54.2
ClCG01G000560 Citrullus lanatus HOM05D000974 ORTHO05D007456 5.4e-71 271.9 282 52.8
Gohir.A09G183700 Gossypium hirsutum HOM05D000974 ORTHO05D007456 5.4e-71 271.9 272 54.8
MD01G1215900 Malus domestica HOM05D000974 ORTHO05D007456 1.2e-70 270.8 281 55.5
Rhsim03G0199900 Rhododendron simsii HOM05D000974 ORTHO05D007456 2.1e-70 270.0 271 55.7
CSS0027071 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D007456 2.7e-70 269.6 278 54.3
CsaV3_5G000660 Cucumis sativus L. HOM05D000974 ORTHO05D007456 3.5e-70 269.2 283 52.7
Gorai.006G200500 Gossypium raimondii HOM05D000974 ORTHO05D007456 3.5e-70 269.2 271 53.5
Oeu060978.1 Olea europaea HOM05D000974 ORTHO05D007456 4.6e-70 268.9 272 55.9
C07p43580 Brassica napus HOM05D000974 ORTHO05D007456 7.8e-70 268.1 278 53.6
BolC7t44885H Brassica oleracea HOM05D000974 ORTHO05D007456 7.8e-70 268.1 278 53.6
Peaxi162Scf00904g00123 Petunia axillaris HOM05D000974 ORTHO05D007456 1.0e-69 267.7 266 55.6
BcaNung01815 Brassica carinata HOM05D000974 ORTHO05D007456 1.7e-69 266.9 278 53.2
vmacro10108 Vaccinium macrocarpon HOM05D000974 ORTHO05D007456 1.7e-69 266.9 279 55.2
A06p34970 Brassica napus HOM05D000974 ORTHO05D007456 2.3e-69 266.5 278 53.2
BraA06t26421Z Brassica rapa HOM05D000974 ORTHO05D007456 2.3e-69 266.5 278 53.2
BcaNung01212 Brassica carinata HOM05D000974 ORTHO05D007456 3.0e-69 266.2 278 54.0
Sp2g23180 Schrenkiella parvula HOM05D000974 ORTHO05D007456 6.6e-69 265.0 274 54.0
AL6G35490 Arabidopsis lyrata HOM05D000974 ORTHO05D007456 1.5e-68 263.8 282 52.8
Glyma.04G238050 Glycine max HOM05D000974 ORTHO05D007456 1.9e-68 263.5 268 52.6
THA.LOC104821367 Tarenaya hassleriana HOM05D000974 ORTHO05D007456 1.9e-68 263.5 277 53.4
CARHR189450 Cardamine hirsuta HOM05D000974 ORTHO05D007456 2.5e-68 263.1 273 53.5
Medtr3g090955 Medicago truncatula HOM05D000974 ORTHO05D007456 9.5e-68 261.2 265 54.7
Haze_00118 Corylus avellana HOM05D000974 ORTHO05D007456 3.6e-67 259.2 279 52.3
TAR636G3288 Trochodendron aralioides HOM05D000974 ORTHO05D007456 3.6e-67 259.2 276 54.0
AT5G24130 Arabidopsis thaliana HOM05D000974 ORTHO05D007456 4.7e-67 258.8 279 52.3
Lj1g0000480 Lotus japonicus HOM05D000974 ORTHO05D007456 4.7e-67 258.8 268 56.0
Sed0023834 Sechium edule HOM05D000974 ORTHO05D007456 4.7e-67 258.8 282 51.4
TPR.G17305 Trifolium pratense HOM05D000974 ORTHO05D007456 8.1e-67 258.1 270 52.2
Lalb_Chr11g0066601 Lupinus albus HOM05D000974 ORTHO05D007456 4.0e-66 255.8 279 51.6
Migut.F00239 Erythranthe guttata HOM05D000974 ORTHO05D007456 2.0e-65 253.4 277 50.5
Carub.0006s2186 Capsella rubella HOM05D000974 ORTHO05D007456 1.3e-64 250.8 273 50.9
PSO135G0499 Papaver somniferum HOM05D000974 ORTHO05D007456 1.3e-64 250.8 280 51.8
Phvul.009G137800 Phaseolus vulgaris HOM05D000974 ORTHO05D007456 1.3e-64 250.8 268 49.3
Duzib084G1361 Durio zibethinus HOM05D000974 ORTHO05D007456 1.7e-64 250.4 276 52.5
PSO384G1506 Papaver somniferum HOM05D000974 ORTHO05D007456 1.7e-64 250.4 275 52.0
VMungo1309G2916 Vigna mungo HOM05D000974 ORTHO05D007456 1.7e-64 250.4 268 48.9
Cpa.g.sc34.147 Carica papaya HOM05D000974 ORTHO05D007456 2.2e-64 250.0 277 51.6
AUR62019342 Chenopodium quinoa HOM05D000974 ORTHO05D007456 2.2e-64 250.0 283 53.0
SGA_v2.0_scaffold192G40573 Striga asiatica HOM05D000974 ORTHO05D007456 2.2e-64 250.0 278 56.5
Aqoxy7G00132 Aquilegia oxysepala HOM05D000974 ORTHO05D007456 4.9e-64 248.8 280 51.4
Aa31LG11G3400 Aethionema arabicum HOM05D000974 ORTHO05D007456 4.1e-63 245.7 273 49.5
unitig_747.g21851 Utricularia gibba HOM05D000974 ORTHO05D007456 2.1e-62 243.4 259 53.7
Lj1A1013G39 Lonicera japonica HOM05D000974 ORTHO05D007456 4.6e-62 242.3 277 54.2
HanXRQChr14g0462881 Helianthus annuus HOM05D000974 ORTHO05D007456 3.0e-61 239.6 259 51.0
SalBow4G2102 Salvia bowleyana HOM05D000974 ORTHO05D007456 3.3e-60 236.1 272 49.3
Lsat_1_v5_gn_2_134181 Lactuca sativa HOM05D000974 ORTHO05D007456 5.6e-60 235.3 266 49.2
ECA232G4254 Erigeron canadensis HOM05D000974 ORTHO05D007456 3.6e-59 232.6 271 50.2
Lsat_1_v5_gn_9_57980 Lactuca sativa HOM05D000974 ORTHO05D007456 1.4e-58 230.7 278 48.9
Psat5g079560 Pisum sativum HOM05D000974 ORTHO05D007456 2.4e-58 229.9 269 50.9
Potri.015G021300 Populus trichocarpa HOM05D000974 ORTHO05D007456 9.9e-57 224.6 204 61.3
Rhsim09G0204200 Rhododendron simsii HOM05D000974 ORTHO05D007456 3.8e-56 222.6 258 50.0
Atru.chr1.258 Acer truncatum HOM05D000974 ORTHO05D007456 4.9e-56 222.2 266 49.6
TAR375G0325 Trochodendron aralioides HOM05D000974 ORTHO05D007456 1.2e-54 217.6 281 48.0
HanXRQChr09g0253031 Helianthus annuus HOM05D000974 ORTHO05D007456 1.6e-54 217.2 265 47.5
Cfa016368 Carpinus fangiana HOM05D000974 ORTHO05D007456 4.6e-54 215.7 278 48.2
MBI07_g34227_MAGBIO Magnolia biondii HOM05D000974 ORTHO05D007456 1.2e-49 201.1 278 45.7
Oeu060979.1 Olea europaea HOM05D000974 ORTHO05D007456 4.4e-49 199.1 203 54.2
DCAR_014533 Daucus carota HOM05D000974 ORTHO05D007456 9.9e-49 198.0 278 46.8
SalBow4G1511 Salvia bowleyana HOM05D000974 ORTHO05D007456 9.3e-47 191.4 272 43.0
HPP92_005207 Vanilla planifolia HOM05D000974 ORTHO05D007456 1.0e-45 188.0 280 44.3
ECA238G2040 Erigeron canadensis HOM05D005084 ORTHO05D006254 1.3e-45 187.6 234 45.7
Zm00001eb238160 Zea mays HOM05D000974 ORTHO05D007456 1.6e-43 180.6 285 42.1
QL09p010742 Quercus lobata HOM05D000974 ORTHO05D007456 4.0e-42 176.0 241 44.8
Nn1g01835 Nelumbo nucifera HOM05D000974 ORTHO05D007456 1.5e-41 174.1 276 41.3
PGSC0003DMG400009074 Solanum tuberosum HOM05D000974 ORTHO05D007456 3.8e-40 169.5 145 61.4
Sopen03g003300 Solanum pennellii HOM05D000974 ORTHO05D007456 5.4e-39 165.6 145 60.7
Mapoly0123s0011 Marchantia polymorpha HOM05D000974 ORTHO05D007456 1.9e-36 157.1 265 39.6
AagrBONN_evm.TU.Sc2ySwM_117.3541 Anthoceros agrestis HOM05D000974 ORTHO05D007456 9.0e-34 148.3 261 37.9
Zm00001eb345000 Zea mays HOM05D000974 ORTHO05D007456 1.2e-30 137.9 273 37.7
CiPaw.05G257300 Carya illinoinensis HOM05D000974 ORTHO05D007456 2.1e-30 137.1 112 67.0
Rhsim02G0197500 Rhododendron simsii HOM05D000974 ORTHO05D007456 7.9e-30 135.2 177 44.6
CDE10G0850 Ceratophyllum demersum HOM05D000974 ORTHO05D007456 1.3e-29 134.4 280 35.7
Rhsim04G0082700 Rhododendron simsii HOM05D000974 ORTHO05D007456 3.9e-29 132.9 177 44.1
Os05g0586700 Oryza sativa ssp. japonica HOM05D000974 ORTHO05D007456 9.6e-28 128.3 307 32.6
Pp3c2_19140 Physcomitrium patens HOM05D000974 ORTHO05D007456 4.0e-26 122.9 265 32.5
CiPaw.05G257400 Carya illinoinensis HOM05D000974 ORTHO05D007456 1.5e-25 120.9 134 50.0
Lalb_Chr08g0240551 Lupinus albus HOM05D000974 ORTHO05D007456 8.4e-24 115.2 96 57.3
Hma1.2p1_1655F.1_g295980 Hydrangea macrophylla HOM05D000974 ORTHO05D007456 1.1e-23 114.8 158 45.6
Os02g0257200 Oryza sativa ssp. japonica HOM05D000974 ORTHO05D007456 3.2e-23 113.2 279 33.3
SMO347G0394 Selaginella moellendorffii HOM05D000974 ORTHO05D007456 5.5e-23 112.5 281 31.0
FAN01G0307 Fragaria x ananassa HOM05D000974 ORTHO05D007456 9.7e-20 101.7 282 31.2
TAR629G1462 Trochodendron aralioides HOM05D000974 ORTHO05D007456 1.1e-18 98.2 115 46.1
vmacro10109 Vaccinium macrocarpon HOM05D000974 ORTHO05D007456 1.2e-17 94.7 149 40.3
Oeu060977.1 Olea europaea HOM05D000974 ORTHO05D007456 1.7e-16 90.9 119 45.4
Actinidia08630 Actinidia chinensis HOM05D000974 ORTHO05D007456 1.9e-15 87.4 139 43.2
MBI07_g45742_MAGBIO Magnolia biondii HOM05D000974 ORTHO05D007456 1.0e-13 81.6 278 29.1
Atru.chr1.262 Acer truncatum HOM05D000974 ORTHO05D007456 2.3e-13 80.5 63 71.4
Lalb_Chr08g0240561 Lupinus albus HOM05D000974 ORTHO05D007456 5.1e-13 79.3 126 38.9
CDE10G0750 Ceratophyllum demersum HOM05D000974 ORTHO05D007456 2.5e-12 77.0 96 49.0
Lalb_Chr08g0240541 Lupinus albus HOM05D000974 ORTHO05D007456 1.7e-08 64.3 75 48.0
ATR0589G055 Amborella trichopoda HOM05D000974 ORTHO05D007456 5.0e-08 62.8 120 34.2
Pp3c3_31670 Physcomitrium patens HOM05D000974 ORTHO05D007456 1.9e-07 60.8 158 30.4
ATR0589G008 Amborella trichopoda HOM05D000974 ORTHO05D007456 9.4e-07 58.5 85 47.1


User provided reference genes

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