Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3A8T28 Lonicera japonica HOM05D006577 ORTHO05D008428 1.7e-22 110.2 51 100.0
Lj3C28T3 Lonicera japonica HOM05D006577 ORTHO05D008428 1.1e-21 107.5 51 98.0
CSS0014058 Camellia sinensis var. sinensis HOM05D006577 ORTHO05D008428 3.3e-18 95.9 48 89.6
Rhsim11G0036700 Rhododendron simsii HOM05D006577 ORTHO05D008428 5.6e-18 95.1 50 86.0
DCAR_030906 Daucus carota HOM05D006577 ORTHO05D008428 3.6e-17 92.4 51 82.4
GSVIVG01036870001 Vitis vinifera HOM05D006577 ORTHO05D008428 3.6e-17 92.4 49 87.8
vmacro00091 Vaccinium macrocarpon HOM05D006577 ORTHO05D008428 4.7e-17 92.0 50 84.0
Phvul.002G121300 Phaseolus vulgaris HOM05D006577 ORTHO05D008428 1.4e-16 90.5 51 86.3
PGR042G0863 Punica granatum HOM05D006577 ORTHO05D008428 1.4e-16 90.5 50 86.0
TWI73G0063 Tripterygium wilfordii HOM05D006577 ORTHO05D008428 1.4e-16 90.5 47 87.2
Cpa.g.sc90.36 Carica papaya HOM05D006577 ORTHO05D008428 2.3e-16 89.7 48 81.2
Oeu046783.1 Olea europaea HOM05D006577 ORTHO05D008428 2.3e-16 89.7 48 83.3
Prupe.1G353400 Prunus persica HOM05D006577 ORTHO05D008428 2.3e-16 89.7 51 80.4
QL12p004173 Quercus lobata HOM05D006577 ORTHO05D008428 2.3e-16 89.7 51 84.3
Atru.chr8.2629 Acer truncatum HOM05D006577 ORTHO05D008428 3.1e-16 89.4 50 80.0
VMungo1215G3406 Vigna mungo HOM05D006577 ORTHO05D008428 3.1e-16 89.4 51 84.3
Oeu015543.2 Olea europaea HOM05D006577 ORTHO05D008428 4.0e-16 89.0 48 83.3
Actinidia32789 Actinidia chinensis HOM05D006577 ORTHO05D008428 5.2e-16 88.6 51 84.3
Nn7g37388 Nelumbo nucifera HOM05D006577 ORTHO05D008428 5.2e-16 88.6 46 87.0
MSTRG.1757 Avicennia marina HOM05D006577 ORTHO05D008428 6.8e-16 88.2 46 89.1
CiPaw.11G075200 Carya illinoinensis HOM05D006577 ORTHO05D008428 6.8e-16 88.2 48 85.4
Dinv41806 Davidia involucrata HOM05D006577 ORTHO05D008428 6.8e-16 88.2 48 89.6
Sc24g0001520 Simmondsia chinensis HOM05D006577 ORTHO05D008428 6.8e-16 88.2 46 84.8
arahy.Tifrunner.gnm1.ann1.0U4NMV Arachis hypogaea HOM05D006577 ORTHO05D008428 8.9e-16 87.8 51 82.4
arahy.Tifrunner.gnm1.ann1.Y0J304 Arachis hypogaea HOM05D006577 ORTHO05D008428 8.9e-16 87.8 51 82.4
Aqoxy7G00896 Aquilegia oxysepala HOM05D006577 ORTHO05D008428 1.2e-15 87.4 52 78.8
TAR629G1131 Trochodendron aralioides HOM05D006577 ORTHO05D008428 1.5e-15 87.0 50 78.0
Gohir.A08G149500 Gossypium hirsutum HOM05D006577 ORTHO05D008428 2.6e-15 86.3 51 80.4
Gohir.D08G170500 Gossypium hirsutum HOM05D006577 ORTHO05D008428 2.6e-15 86.3 51 80.4
Gorai.004G178000 Gossypium raimondii HOM05D006577 ORTHO05D008428 2.6e-15 86.3 51 80.4
PSO675G5955 Papaver somniferum HOM05D006577 ORTHO05D008428 2.6e-15 86.3 48 79.2
ECA233G0973 Erigeron canadensis HOM05D006577 ORTHO05D008428 3.4e-15 85.9 50 78.0
PSO502G0007 Papaver somniferum HOM05D006577 ORTHO05D008428 3.4e-15 85.9 48 79.2
Potri.004G236300 Populus trichocarpa HOM05D006577 ORTHO05D008428 3.4e-15 85.9 48 79.2
Lsat_1_v5_gn_6_17281 Lactuca sativa HOM05D006577 ORTHO05D008428 4.4e-15 85.5 50 78.0
MD08G1001400 Malus domestica HOM05D006577 ORTHO05D008428 4.4e-15 85.5 49 85.7
Cc08_g05650 Coffea canephora HOM05D006577 ORTHO05D008428 5.8e-15 85.1 48 77.1
Eucgr.D02560 Eucalyptus grandis HOM05D006577 ORTHO05D008428 5.8e-15 85.1 48 81.2
Thecc.03G318900 Theobroma cacao HOM05D006577 ORTHO05D008428 5.8e-15 85.1 48 83.3
CDE01G0285 Ceratophyllum demersum HOM05D006577 ORTHO05D008428 7.6e-15 84.7 46 82.6
Glyma.11G090300 Glycine max HOM05D006577 ORTHO05D008428 7.6e-15 84.7 52 82.7
Sabra01G0180600 Salix brachista HOM05D006577 ORTHO05D008428 7.6e-15 84.7 48 79.2
Hund17692 Selenicereus undatus HOM05D006577 ORTHO05D008428 7.6e-15 84.7 51 76.5
ATR0568G043 Amborella trichopoda HOM05D006577 ORTHO05D008428 9.9e-15 84.3 48 75.0
COL.COLO4_11282 Corchorus olitorius HOM05D006577 ORTHO05D008428 9.9e-15 84.3 51 78.4
Glyma.01G154300 Glycine max HOM05D006577 ORTHO05D008428 1.3e-14 84.0 51 82.4
CDE12G0431 Ceratophyllum demersum HOM05D006577 ORTHO05D008428 1.7e-14 83.6 46 80.4
SEGI_36653 Sequoiadendron giganteum HOM05D006577 ORTHO05D008428 1.7e-14 83.6 52 75.0
RcHm_v2.0_Chr6g0304321 Rosa chinensis HOM05D006577 ORTHO05D008428 2.2e-14 83.2 49 83.7
CsaV3_4G027910 Cucumis sativus L. HOM05D006577 ORTHO05D008428 2.9e-14 82.8 52 78.8
Lj2g0006155 Lotus japonicus HOM05D006577 ORTHO05D008428 2.9e-14 82.8 51 80.4
HanXRQChr07g0198411 Helianthus annuus HOM05D006577 ORTHO05D008428 3.7e-14 82.4 46 80.4
Lalb_Chr16g0380351 Lupinus albus HOM05D006577 ORTHO05D008428 3.7e-14 82.4 48 81.2
Manes.17G000100 Manihot esculenta HOM05D006577 ORTHO05D008428 4.9e-14 82.0 48 79.2
Cfa012291 Carpinus fangiana HOM05D000435 ORTHO05D000430 6.4e-14 81.6 43 83.7
Ciclev10011516m.g Citrus clementina HOM05D006577 ORTHO05D008428 1.1e-13 80.9 45 75.6
MELO3C010522.2 Cucumis melo HOM05D006577 ORTHO05D008428 1.1e-13 80.9 49 81.6
HPP92_002488 Vanilla planifolia HOM05D006577 ORTHO05D008428 1.1e-13 80.9 50 72.0
Zm00001eb227500 Zea mays HOM05D006577 ORTHO05D008428 1.4e-13 80.5 48 75.0
Migut.E01373 Erythranthe guttata HOM05D006577 ORTHO05D008428 1.9e-13 80.1 46 80.4
Peaxi162Scf00193g00730 Petunia axillaris HOM05D006577 ORTHO05D008428 1.9e-13 80.1 48 77.1
CANSAT35G0698 Cannabis sativa HOM05D006577 ORTHO05D008428 3.2e-13 79.3 52 78.8
FvH4_2g37380 Fragaria vesca HOM05D006577 ORTHO05D008428 3.2e-13 79.3 49 81.6
FAN21G2299 Fragaria x ananassa HOM05D006577 ORTHO05D008428 3.2e-13 79.3 49 81.6
FAN27G1697 Fragaria x ananassa HOM05D006577 ORTHO05D008428 3.2e-13 79.3 49 81.6
FAN20G0322 Fragaria x ananassa HOM05D006577 ORTHO05D008428 4.1e-13 79.0 49 81.6
Sopen08g024050 Solanum pennellii HOM05D006577 ORTHO05D008428 4.1e-13 79.0 48 77.1
Haze_08434 Corylus avellana HOM05D006577 ORTHO05D008428 5.4e-13 78.6 48 72.9
Nitab4.5_0000030g0480 Nicotiana tabacum HOM05D006577 ORTHO05D008428 5.4e-13 78.6 48 75.0
Ca_13135_v3 Cicer arietinum L. HOM05D006577 ORTHO05D008428 9.2e-13 77.8 52 76.9
FAN21G2282 Fragaria x ananassa HOM05D006577 ORTHO05D011051 9.2e-13 77.8 49 79.6
Solyc08g075420.4 Solanum lycopersicum HOM05D006577 ORTHO05D008428 9.2e-13 77.8 48 75.0
CAN.G1026.7 Capsicum annuum HOM05D006577 ORTHO05D008428 1.2e-12 77.4 48 75.0
Aa31LG6G1900 Aethionema arabicum HOM05D006577 ORTHO05D008428 1.6e-12 77.0 47 78.7
EL10Ac8g19602 Beta vulgaris HOM05D006577 ORTHO05D008428 2.1e-12 76.6 45 75.6
ClCG11G016060 Citrullus lanatus HOM05D006577 ORTHO05D008428 2.1e-12 76.6 45 80.0
Ah.09g232390 Amaranthus hybridus HOM05D006577 ORTHO05D008428 2.7e-12 76.3 46 78.3
AL7G34890 Arabidopsis lyrata HOM05D006577 ORTHO05D008428 2.7e-12 76.3 48 72.9
Sp7g17900 Schrenkiella parvula HOM05D006577 ORTHO05D008428 2.7e-12 76.3 48 72.9
BcaC09g51429 Brassica carinata HOM05D006577 ORTHO05D008428 3.5e-12 75.9 48 72.9
A01p11160 Brassica napus HOM05D006577 ORTHO05D008428 3.5e-12 75.9 48 72.9
C01p13200 Brassica napus HOM05D006577 ORTHO05D008428 3.5e-12 75.9 48 72.9
BolC1t01294H Brassica oleracea HOM05D006577 ORTHO05D008428 3.5e-12 75.9 48 72.9
BraA01t01062Z Brassica rapa HOM05D006577 ORTHO05D008428 3.5e-12 75.9 48 72.9
FAN21G2462 Fragaria x ananassa HOM05D006577 ORTHO05D011051 3.5e-12 75.9 49 77.6
Nitab4.5_0007095g0010 Nicotiana tabacum HOM05D006577 ORTHO05D008428 3.5e-12 75.9 51 68.6
AT4G19190 Arabidopsis thaliana HOM05D006577 ORTHO05D008428 4.6e-12 75.5 48 70.8
AUR62030109 Chenopodium quinoa HOM05D006577 ORTHO05D008428 4.6e-12 75.5 58 69.0
Sed0006082 Sechium edule HOM05D006577 ORTHO05D008428 4.6e-12 75.5 49 69.4
AUR62042461 Chenopodium quinoa HOM05D006577 ORTHO05D008428 6.0e-12 75.1 58 69.0
Psat1g131640 Pisum sativum HOM05D006577 ORTHO05D008428 6.0e-12 75.1 50 74.0
Medtr2g040410 Medicago truncatula HOM05D006577 ORTHO05D008428 7.8e-12 74.7 49 77.6
TPR.G29075 Trifolium pratense HOM05D006577 ORTHO05D008428 7.8e-12 74.7 50 76.0
Thhalv10024821m.g Eutrema salsugineum HOM05D006577 ORTHO05D008428 1.0e-11 74.3 45 75.6
THA.LOC104806196 Tarenaya hassleriana HOM05D006577 ORTHO05D008428 1.0e-11 74.3 49 71.4
CARHR226070 Cardamine hirsuta HOM05D006577 ORTHO05D008428 2.3e-11 73.2 50 70.0
Carub.0007s2195 Capsella rubella HOM05D006577 ORTHO05D008428 6.6e-11 71.6 48 68.8
SMO172G0042 Selaginella moellendorffii HOM05D006577 ORTHO05D008428 1.1e-10 70.9 52 63.5
FAN21G2626 Fragaria x ananassa HOM05D006577 ORTHO05D011051 1.2e-09 67.4 49 75.5
unitig_37.g12910 Utricularia gibba HOM05D006577 ORTHO05D008428 3.6e-09 65.9 50 60.0
Mapoly0190s0006 Marchantia polymorpha HOM05D006577 ORTHO05D008428 5.2e-08 62.0 53 56.6
Pp3c3_31660 Physcomitrium patens HOM05D006577 ORTHO05D008428 5.2e-08 62.0 61 52.5
CARHR123800 Cardamine hirsuta HOM05D006577 ORTHO05D008428 1.3e-06 57.4 28 89.3
CBR_g50314 Chara braunii HOM05D006577 ORTHO05D008428 1.3e-06 57.4 29 82.8
BcaB08g35318 Brassica carinata HOM05D006577 ORTHO05D008428 4.9e-06 55.5 44 61.4
FvH4_3g03932 Fragaria vesca HOM05D006577 ORTHO05D008428 6.4e-06 55.1 28 89.3


User provided reference genes

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