Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3A898T31 Lonicera japonica HOM05D004865 ORTHO05D005949 1.3e-128 463.0 217 100.0
ClCG11G000680 Citrullus lanatus HOM05D004865 ORTHO05D005949 5.2e-82 308.1 213 68.5
Sed0022242 Sechium edule HOM05D004865 ORTHO05D005949 1.3e-80 303.5 210 68.1
ClCG11G000590 Citrullus lanatus HOM05D004865 ORTHO05D005949 5.4e-79 298.1 213 66.2
ClCG03G011140 Citrullus lanatus HOM05D004865 ORTHO05D005949 3.5e-78 295.4 210 65.2
ClCG03G011170 Citrullus lanatus HOM05D004865 ORTHO05D005949 6.0e-78 294.7 213 65.7
MELO3C010083.2 Cucumis melo HOM05D004865 ORTHO05D005949 6.0e-70 268.1 211 60.7
MD09G1162700 Malus domestica HOM05D004865 ORTHO05D005949 1.5e-68 263.5 209 61.2
CsaV3_1G044030 Cucumis sativus L. HOM05D004865 ORTHO05D005949 5.6e-68 261.5 212 58.5
MD05G1102400 Malus domestica HOM05D004865 ORTHO05D005949 1.2e-67 260.4 209 59.3
MD09G1162900 Malus domestica HOM05D004865 ORTHO05D005949 3.6e-67 258.8 212 60.8
Hma1.2p1_0543F.1_g175180 Hydrangea macrophylla HOM05D004865 ORTHO05D005949 1.1e-66 257.3 208 61.1
Hma1.2p1_3336F.1_g335335 Hydrangea macrophylla HOM05D004865 ORTHO05D005949 1.1e-66 257.3 208 61.1
MD09G1162600 Malus domestica HOM05D004865 ORTHO05D005949 9.9e-65 250.8 211 59.7
MD17G1147700 Malus domestica HOM05D004865 ORTHO05D005949 1.6e-62 243.4 188 61.2
FAN22G1472 Fragaria x ananassa HOM05D004865 ORTHO05D005949 6.0e-62 241.5 216 53.7
Actinidia30931 Actinidia chinensis HOM05D004865 ORTHO05D005949 5.6e-60 235.0 212 55.2
Actinidia30932 Actinidia chinensis HOM05D004865 ORTHO05D005949 3.1e-58 229.2 212 53.8
FvH4_6g36010 Fragaria vesca HOM05D004865 ORTHO05D005949 2.9e-56 222.6 216 51.9
FAN02G0162 Fragaria x ananassa HOM05D004865 ORTHO05D005949 2.9e-56 222.6 206 51.9
FAN09G4882 Fragaria x ananassa HOM05D004865 ORTHO05D005949 1.2e-54 217.2 240 46.2
Prupe.2G116800 Prunus persica HOM05D004865 ORTHO05D005949 5.1e-53 211.8 214 53.3
MD09G1163100 Malus domestica HOM05D004865 ORTHO05D005949 9.6e-52 207.6 215 53.5
Actinidia05767 Actinidia chinensis HOM05D004865 ORTHO05D005949 4.8e-51 205.3 214 45.3
Duzib212G1045 Durio zibethinus HOM05D004865 ORTHO05D005949 1.8e-50 203.4 208 50.0
Prupe.1G577300 Prunus persica HOM05D004865 ORTHO05D005949 5.3e-50 201.8 181 55.2
MD17G1148100 Malus domestica HOM05D004865 ORTHO05D005949 2.9e-48 196.1 178 55.1
MD17G1148200 Malus domestica HOM05D004865 ORTHO05D005949 2.9e-48 196.1 178 55.1
HanXRQChr14g0437021 Helianthus annuus HOM05D000041 ORTHO05D000452 2.4e-47 193.0 211 45.5
Gohir.D10G128100 Gossypium hirsutum HOM05D004865 ORTHO05D005949 7.1e-47 191.4 207 44.4
Gorai.011G141300 Gossypium raimondii HOM05D004865 ORTHO05D005949 7.1e-47 191.4 207 44.4
Gohir.A10G138700 Gossypium hirsutum HOM05D004865 ORTHO05D005949 4.6e-46 188.7 207 44.0
Lsat_1_v5_gn_8_2701 Lactuca sativa HOM05D000041 ORTHO05D000452 4.6e-46 188.7 208 46.2
MD17G1148000 Malus domestica HOM05D004865 ORTHO05D005949 1.3e-45 187.2 211 47.4
Ah.14g087230 Amaranthus hybridus HOM05D004865 ORTHO05D005949 1.8e-45 186.8 208 44.2
ECA233G0690 Erigeron canadensis HOM05D000041 ORTHO05D000452 1.8e-45 186.8 211 45.0
Sc24g0002410 Simmondsia chinensis HOM05D004865 ORTHO05D005949 6.7e-45 184.9 224 47.3
Hma1.2p1_1768F.1_g301530 Hydrangea macrophylla HOM05D004865 ORTHO05D005949 2.1e-43 179.9 146 58.2
EL10Ac8g20499 Beta vulgaris HOM05D004865 ORTHO05D005949 8.1e-43 177.9 205 42.4
Sc24g0002420 Simmondsia chinensis HOM05D004865 ORTHO05D005949 8.1e-43 177.9 224 46.0
DCAR_015955 Daucus carota HOM05D004865 ORTHO05D005949 1.8e-42 176.8 205 46.3
Cre07.g321800 Chlamydomonas reinhardtii HOM05D004865 ORTHO05D005949 3.4e-41 172.6 223 42.6
Duzib052G0039 Durio zibethinus HOM05D004865 ORTHO05D005949 1.3e-40 170.6 207 44.4
DCAR_015954 Daucus carota HOM05D004865 ORTHO05D005949 1.7e-40 170.2 206 41.7
Sc09g0006330 Simmondsia chinensis HOM05D004865 ORTHO05D005949 2.9e-40 169.5 216 43.1
AUR62031151 Chenopodium quinoa HOM05D004865 ORTHO05D005949 3.8e-40 169.1 205 40.0
AUR62036568 Chenopodium quinoa HOM05D004865 ORTHO05D005949 3.8e-40 169.1 205 40.5
AUR62036569 Chenopodium quinoa HOM05D004865 ORTHO05D005949 4.9e-40 168.7 207 43.0
Sc22g0001710 Simmondsia chinensis HOM05D004865 ORTHO05D005949 4.9e-40 168.7 218 44.5
Sc22g0001740 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.4e-39 167.2 214 41.6
AUR62031152 Chenopodium quinoa HOM05D004865 ORTHO05D005949 2.4e-39 166.4 207 43.0
Ah.06g181840 Amaranthus hybridus HOM05D004865 ORTHO05D005949 5.5e-39 165.2 216 45.4
DCAR_016015 Daucus carota HOM05D004865 ORTHO05D005949 5.5e-39 165.2 207 40.1
DCAR_016016 Daucus carota HOM05D004865 ORTHO05D005949 9.3e-39 164.5 205 42.4
Os04g0308500 Oryza sativa ssp. japonica HOM05D004865 ORTHO05D005949 9.3e-39 164.5 207 41.1
Os04g0310100 Oryza sativa ssp. japonica HOM05D004865 ORTHO05D005949 9.3e-39 164.5 207 41.1
Sc02g0003580 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.6e-38 163.7 220 43.6
Lj6P373T4 Lonicera japonica HOM05D004865 ORTHO05D005949 7.9e-38 161.4 128 59.4
Ah.14g087240 Amaranthus hybridus HOM05D004865 ORTHO05D005949 1.3e-37 160.6 209 42.6
FAN14G5541 Fragaria x ananassa HOM05D004865 ORTHO05D005949 1.3e-37 160.6 104 66.3
Ah.14g087250 Amaranthus hybridus HOM05D004865 ORTHO05D005949 1.8e-37 160.2 208 40.9
SGA_v2.0_scaffold11G05644 Striga asiatica HOM05D004865 ORTHO05D005949 3.0e-37 159.5 209 41.6
Lj1P314T6 Lonicera japonica HOM05D004865 ORTHO05D005949 5.1e-37 158.7 140 51.4
AUR62012544 Chenopodium quinoa HOM05D004865 ORTHO05D005949 6.7e-37 158.3 221 41.6
Sc22g0001760 Simmondsia chinensis HOM05D004865 ORTHO05D005949 6.7e-37 158.3 213 42.7
Sc09g0006530 Simmondsia chinensis HOM05D004865 ORTHO05D005949 8.7e-37 157.9 216 43.1
Zm00001eb137370 Zea mays HOM05D004865 ORTHO05D005949 1.1e-36 157.5 203 39.9
Zm00001eb137430 Zea mays HOM05D004865 ORTHO05D005949 1.1e-36 157.5 203 40.4
Lj1P308T9 Lonicera japonica HOM05D004865 ORTHO05D005949 1.9e-36 156.8 140 50.7
Sc06g0005920 Simmondsia chinensis HOM05D004865 ORTHO05D005949 7.4e-36 154.8 214 42.5
FAN14G3467 Fragaria x ananassa HOM05D004865 ORTHO05D005949 2.1e-35 153.3 104 63.5
AUR62014652 Chenopodium quinoa HOM05D004865 ORTHO05D005949 2.8e-35 152.9 214 41.6
EL10As6g23632 Beta vulgaris HOM05D004865 ORTHO05D005949 6.2e-35 151.8 219 37.9
Lj6P379T11 Lonicera japonica HOM05D004865 ORTHO05D005949 6.2e-35 151.8 128 55.5
Lj6P378T3 Lonicera japonica HOM05D004865 ORTHO05D005949 8.1e-35 151.4 128 55.5
Sc09g0006350 Simmondsia chinensis HOM05D004865 ORTHO05D005949 8.1e-35 151.4 217 39.6
Os04g0308400 Oryza sativa ssp. japonica HOM05D004865 ORTHO05D005949 1.4e-34 150.6 210 40.0
Os04g0310200 Oryza sativa ssp. japonica HOM05D004865 ORTHO05D005949 1.4e-34 150.6 210 40.0
Lj6C375T0 Lonicera japonica HOM05D004865 ORTHO05D005949 2.4e-34 149.8 171 44.4
Sc22g0001730 Simmondsia chinensis HOM05D004865 ORTHO05D005949 4.0e-34 149.1 215 39.5
Sc22g0001750 Simmondsia chinensis HOM05D004865 ORTHO05D005949 4.0e-34 149.1 214 40.7
Lj1P501T11 Lonicera japonica HOM05D004865 ORTHO05D005949 6.9e-34 148.3 128 51.6
Lj1P506T13 Lonicera japonica HOM05D004865 ORTHO05D005949 6.9e-34 148.3 128 51.6
SGA_v2.0_scaffold163G38046 Striga asiatica HOM05D004865 ORTHO05D005949 9.0e-34 147.9 210 41.0
Lj6P371T8 Lonicera japonica HOM05D004865 ORTHO05D005949 1.5e-33 147.1 128 53.1
EL10As6g23631 Beta vulgaris HOM05D004865 ORTHO05D005949 3.4e-33 146.0 219 36.5
AUR62044724 Chenopodium quinoa HOM05D004865 ORTHO05D005949 3.4e-33 146.0 216 41.2
Sc09g0006340 Simmondsia chinensis HOM05D004865 ORTHO05D005949 4.5e-33 145.6 217 41.5
Lj1P506T10 Lonicera japonica HOM05D004865 ORTHO05D005949 7.6e-33 144.8 128 50.8
Lj1P515T6 Lonicera japonica HOM05D004865 ORTHO05D005949 7.6e-33 144.8 128 50.8
CSS0027528 Camellia sinensis var. sinensis HOM05D004865 ORTHO05D005949 2.2e-32 143.3 206 43.2
Sc23g0005380 Simmondsia chinensis HOM05D004865 ORTHO05D005949 2.2e-32 143.3 206 40.3
AUR62027395 Chenopodium quinoa HOM05D004865 ORTHO05D005949 1.9e-31 140.2 190 44.7
CSS0028314 Camellia sinensis var. sinensis HOM05D004865 ORTHO05D005949 4.2e-31 139.0 202 42.1
Sc22g0001720 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.6e-30 137.1 168 44.0
Zm00001eb137410 Zea mays HOM05D004865 ORTHO05D005949 1.6e-30 137.1 203 37.9
Sc17g0004370 Simmondsia chinensis HOM05D004865 ORTHO05D005949 7.9e-30 134.8 160 43.1
HanXRQChr03g0060851 Helianthus annuus HOM05D004865 ORTHO05D005949 1.0e-29 134.4 215 37.7
EL10Ac8g20500 Beta vulgaris HOM05D004865 ORTHO05D005949 1.3e-29 134.0 206 39.8
CSS0032746 Camellia sinensis var. sinensis HOM05D004865 ORTHO05D005949 1.8e-29 133.7 199 41.7
Zm00001eb137380 Zea mays HOM05D004865 ORTHO05D005949 5.1e-29 132.1 203 36.5
HanXRQChr03g0060861 Helianthus annuus HOM05D004865 ORTHO05D005949 6.7e-29 131.7 208 38.0
SGA_v2.0_scaffold105G30447 Striga asiatica HOM05D004865 ORTHO05D005949 8.7e-29 131.3 212 34.4
AUR62027396 Chenopodium quinoa HOM05D004865 ORTHO05D005949 1.6e-27 127.1 175 41.1
CSS0005385 Camellia sinensis var. sinensis HOM05D004865 ORTHO05D005949 2.8e-27 126.3 198 41.9
Ah.14g087270 Amaranthus hybridus HOM05D004865 ORTHO05D005949 4.1e-26 122.5 172 37.8
AUR62012547 Chenopodium quinoa HOM05D004865 ORTHO05D005949 4.1e-26 122.5 217 36.9
ECA233G5215 Erigeron canadensis HOM05D004865 ORTHO05D005949 5.3e-26 122.1 211 37.0
CsaV3_4G030090 Cucumis sativus L. HOM05D004865 ORTHO05D005949 9.0e-26 121.3 73 69.9
ECA233G2698 Erigeron canadensis HOM05D004865 ORTHO05D005949 1.0e-24 117.9 216 35.6
Prupe.2G116900 Prunus persica HOM05D004865 ORTHO05D005949 1.0e-24 117.9 203 35.5
SGA_v2.0_scaffold11G05649 Striga asiatica HOM05D004865 ORTHO05D005949 3.8e-24 115.9 170 39.4
AUR62014649 Chenopodium quinoa HOM05D004865 ORTHO05D005949 6.5e-24 115.2 145 44.1
AUR62012571 Chenopodium quinoa HOM05D004865 ORTHO05D005949 1.4e-23 114.0 177 37.9
Sc16g0002960 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.9e-23 113.6 169 40.2
Sc16g0002940 Simmondsia chinensis HOM05D004865 ORTHO05D005949 2.5e-23 113.2 111 50.5
ECA233G1731 Erigeron canadensis HOM05D004865 ORTHO05D005949 9.3e-23 111.3 157 40.8
Sc24g0002440 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.2e-22 110.9 157 43.3
ECA233G6014 Erigeron canadensis HOM05D004865 ORTHO05D005949 2.7e-22 109.8 158 40.5
Sed0001554 Sechium edule HOM05D004865 ORTHO05D034719 1.0e-21 107.8 215 33.5
MELO3C031484.2 Cucumis melo HOM05D004865 ORTHO05D005949 1.8e-21 107.1 223 33.6
Sed0006015 Sechium edule HOM05D004865 ORTHO05D034719 1.8e-21 107.1 216 34.7
ECA233G0596 Erigeron canadensis HOM05D004865 ORTHO05D000001 1.1e-20 104.4 160 38.1
Sc23g0005400 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.1e-20 104.4 138 42.0
AUR62012550 Chenopodium quinoa HOM05D004865 ORTHO05D005949 1.9e-20 103.6 214 33.6
HanXRQChr03g0085651 Helianthus annuus HOM05D004865 ORTHO05D005949 4.3e-20 102.4 218 36.2
EL10Ac6g13634 Beta vulgaris HOM05D004865 ORTHO05D005949 1.3e-19 100.9 142 41.5
AUR62044116 Chenopodium quinoa HOM05D004865 ORTHO05D005949 2.8e-19 99.8 147 37.4
AUR62014650 Chenopodium quinoa HOM05D004865 ORTHO05D005949 3.7e-19 99.4 96 53.1
Lj6P371T11 Lonicera japonica HOM05D004865 ORTHO05D005949 4.8e-19 99.0 92 51.1
Lsat_1_v5_gn_0_11001 Lactuca sativa HOM05D004865 ORTHO05D005949 6.3e-19 98.6 185 35.1
HanXRQChr17g0555831 Helianthus annuus HOM05D004865 ORTHO05D005949 1.8e-18 97.1 158 40.5
HanXRQChr17g0555801 Helianthus annuus HOM05D004865 ORTHO05D005949 3.1e-18 96.3 149 42.3
HanXRQChr13g0416771 Helianthus annuus HOM05D004865 ORTHO05D005949 5.3e-18 95.5 202 35.1
HanXRQChr13g0416751 Helianthus annuus HOM05D004865 ORTHO05D005949 9.1e-18 94.7 202 35.1
HanXRQChr14g0461501 Helianthus annuus HOM05D004865 ORTHO05D005949 1.2e-17 94.4 111 43.2
Sc24g0002640 Simmondsia chinensis HOM05D004865 ORTHO05D005949 7.7e-17 91.7 153 39.9
HanXRQChr13g0416741 Helianthus annuus HOM05D004865 ORTHO05D005949 1.3e-16 90.9 170 37.6
Sed0017379 Sechium edule HOM05D004865 ORTHO05D005949 6.5e-16 88.6 228 29.4
ClCG11G011710 Citrullus lanatus HOM05D004865 ORTHO05D034719 2.5e-15 86.7 218 30.7
ECA233G5781 Erigeron canadensis HOM05D004865 ORTHO05D005949 2.5e-15 86.7 136 36.8
Lsat_1_v5_gn_6_87560 Lactuca sativa HOM05D004865 ORTHO05D005949 3.2e-15 86.3 203 31.5
HanXRQChr03g0085641 Helianthus annuus HOM05D004865 ORTHO05D005949 1.2e-14 84.3 139 36.7
Sc05g0005670 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.8e-13 80.5 76 51.3
Sed0001119 Sechium edule HOM05D004865 ORTHO05D005949 5.7e-12 75.5 149 33.6
EL10Ac6g13635 Beta vulgaris HOM05D004865 ORTHO05D005949 1.7e-11 73.9 212 28.3
AUR62014648 Chenopodium quinoa HOM05D004865 ORTHO05D005949 3.7e-11 72.8 61 57.4
ClCG03G010090 Citrullus lanatus HOM05D004865 ORTHO05D005949 4.5e-09 65.9 48 56.2
ClCG03G010280 Citrullus lanatus HOM05D004865 ORTHO05D005949 2.5e-07 60.1 44 68.2
EL10Ac3g05478 Beta vulgaris HOM05D009434 ORTHO05D011504 1.6e-06 57.4 79 38.0
EL10Ac3g05480 Beta vulgaris HOM05D009434 ORTHO05D011504 1.6e-06 57.4 113 31.0
EL10Ac3g05481 Beta vulgaris HOM05D009434 ORTHO05D011504 3.6e-06 56.2 113 30.1
EL10Ac3g05482 Beta vulgaris HOM05D009434 ORTHO05D011504 3.6e-06 56.2 113 30.1
EL10Ac3g05483 Beta vulgaris HOM05D009434 ORTHO05D011504 3.6e-06 56.2 113 30.1
EL10Ac3g05484 Beta vulgaris HOM05D009434 ORTHO05D011504 3.6e-06 56.2 113 30.1


User provided reference genes

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