Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3A890T58 Lonicera japonica HOM05D006062 ORTHO05D007613 8.1e-28 126.3 63 100.0
DCAR_014570 Daucus carota HOM05D006062 ORTHO05D007613 7.4e-21 103.2 57 84.2
Prupe.2G323500 Prunus persica HOM05D006062 ORTHO05D007613 7.4e-21 103.2 57 86.0
Rhsim09G0211900 Rhododendron simsii HOM05D006062 ORTHO05D007613 7.4e-21 103.2 59 81.4
QL09p026245 Quercus lobata HOM05D006062 ORTHO05D007613 9.6e-21 102.8 56 85.7
CAN.G303.70 Capsicum annuum HOM05D006062 ORTHO05D007613 1.6e-20 102.1 57 86.0
Peaxi162Scf01650g00050 Petunia axillaris HOM05D006062 ORTHO05D007613 1.6e-20 102.1 57 86.0
Sabra19G0053200 Salix brachista HOM05D006062 ORTHO05D007613 1.6e-20 102.1 59 79.7
ECA233G2527 Erigeron canadensis HOM05D006062 ORTHO05D007613 2.1e-20 101.7 57 86.0
Migut.F00106 Erythranthe guttata HOM05D006062 ORTHO05D007613 2.1e-20 101.7 56 85.7
AUR62005918 Chenopodium quinoa HOM05D006062 ORTHO05D007613 2.8e-20 101.3 57 82.5
SGA_v2.0_scaffold18G08502 Striga asiatica HOM05D006062 ORTHO05D007613 2.8e-20 101.3 57 86.0
Atru.chr12.2018 Acer truncatum HOM05D006062 ORTHO05D007613 3.7e-20 100.9 57 84.2
HanXRQChr04g0105241 Helianthus annuus HOM05D006062 ORTHO05D007613 3.7e-20 100.9 57 84.2
Cfa015906 Carpinus fangiana HOM05D006062 ORTHO05D007613 4.8e-20 100.5 57 82.5
Haze_00586 Corylus avellana HOM05D006062 ORTHO05D007613 4.8e-20 100.5 57 80.7
Nitab4.5_0002302g0030 Nicotiana tabacum HOM05D006062 ORTHO05D007613 4.8e-20 100.5 58 81.0
MBI04_g27273_MAGBIO Magnolia biondii HOM05D006062 ORTHO05D007613 8.2e-20 99.8 63 73.0
Nitab4.5_0000021g0330 Nicotiana tabacum HOM05D006062 ORTHO05D007613 8.2e-20 99.8 57 82.5
PSO063G5144 Papaver somniferum HOM05D006062 ORTHO05D007613 8.2e-20 99.8 57 86.0
PSO782G5695 Papaver somniferum HOM05D006062 ORTHO05D007613 8.2e-20 99.8 57 86.0
Hma1.2p1_0758F.1_g213550 Hydrangea macrophylla HOM05D006062 ORTHO05D007613 1.1e-19 99.4 58 79.3
CSS0001214 Camellia sinensis var. sinensis HOM05D006062 ORTHO05D007613 1.4e-19 99.0 59 76.3
FvH4_7g33550 Fragaria vesca HOM05D006062 ORTHO05D007613 1.4e-19 99.0 57 84.2
FAN03G0703 Fragaria x ananassa HOM05D006062 ORTHO05D007613 1.4e-19 99.0 57 84.2
Solyc03g096850.4 Solanum lycopersicum HOM05D006062 ORTHO05D007613 1.4e-19 99.0 57 84.2
Sopen03g027600 Solanum pennellii HOM05D006062 ORTHO05D007613 1.4e-19 99.0 57 84.2
PGSC0003DMG400000569 Solanum tuberosum HOM05D006062 ORTHO05D007613 1.4e-19 99.0 57 84.2
EL10Ac3g05103 Beta vulgaris HOM05D006062 ORTHO05D007613 1.8e-19 98.6 57 82.5
Lsat_1_v5_gn_8_3801 Lactuca sativa HOM05D006062 ORTHO05D007613 1.8e-19 98.6 59 78.0
MD07G1305400 Malus domestica HOM05D006062 ORTHO05D007613 1.8e-19 98.6 57 84.2
RcHm_v2.0_Chr1g0383771 Rosa chinensis HOM05D006062 ORTHO05D007613 1.8e-19 98.6 57 82.5
Thecc.05G207500 Theobroma cacao HOM05D006062 ORTHO05D007613 1.8e-19 98.6 57 82.5
CiPaw.06G020400 Carya illinoinensis HOM05D006062 ORTHO05D007613 2.4e-19 98.2 57 78.9
Eucgr.K00099 Eucalyptus grandis HOM05D006062 ORTHO05D007613 2.4e-19 98.2 57 82.5
Hma1.2p1_0758F.1_g213560 Hydrangea macrophylla HOM05D006062 ORTHO05D007613 2.4e-19 98.2 56 80.4
Sp6g27050 Schrenkiella parvula HOM05D006062 ORTHO05D007613 2.4e-19 98.2 57 82.5
Hund02967 Selenicereus undatus HOM05D006062 ORTHO05D007613 2.4e-19 98.2 57 84.2
TWI60G0061 Tripterygium wilfordii HOM05D006062 ORTHO05D007613 2.4e-19 98.2 57 78.9
Zm00001eb415470 Zea mays HOM05D006062 ORTHO05D007613 2.4e-19 98.2 57 82.5
Ah.13g071240 Amaranthus hybridus HOM05D006062 ORTHO05D007613 3.1e-19 97.8 57 78.9
AUR62028145 Chenopodium quinoa HOM05D006062 ORTHO05D007613 3.1e-19 97.8 58 77.6
Cc02_g00440 Coffea canephora HOM05D006062 ORTHO05D007613 4.1e-19 97.4 59 79.7
COL.COLO4_08913 Corchorus olitorius HOM05D006062 ORTHO05D007613 4.1e-19 97.4 59 78.0
MELO3C005432.2 Cucumis melo HOM05D006062 ORTHO05D007613 4.1e-19 97.4 57 80.7
Glyma.01G229800 Glycine max HOM05D006062 ORTHO05D007613 4.1e-19 97.4 57 82.5
Glyma.11G012700 Glycine max HOM05D006062 ORTHO05D007613 4.1e-19 97.4 57 82.5
Potri.019G042600 Populus trichocarpa HOM05D006062 ORTHO05D007613 4.1e-19 97.4 57 78.9
PGR142G0857 Punica granatum HOM05D006062 ORTHO05D007613 4.1e-19 97.4 57 80.7
THA.LOC104820874 Tarenaya hassleriana HOM05D006062 ORTHO05D007613 4.1e-19 97.4 57 78.9
unitig_52.g17696 Utricularia gibba HOM05D006062 ORTHO05D007613 4.1e-19 97.4 56 82.1
Actinidia18696 Actinidia chinensis HOM05D006062 ORTHO05D007613 5.3e-19 97.1 57 78.9
BcaC03g18534 Brassica carinata HOM05D006062 ORTHO05D007613 5.3e-19 97.1 57 80.7
BcaNung00424 Brassica carinata HOM05D006062 ORTHO05D007613 5.3e-19 97.1 57 80.7
A02p03960 Brassica napus HOM05D006062 ORTHO05D007613 5.3e-19 97.1 57 80.7
C02p08780 Brassica napus HOM05D006062 ORTHO05D007613 5.3e-19 97.1 57 80.7
BolC2t06792H Brassica oleracea HOM05D006062 ORTHO05D007613 5.3e-19 97.1 57 80.7
BraA02t05361Z Brassica rapa HOM05D006062 ORTHO05D007613 5.3e-19 97.1 57 80.7
Thhalv10014045m.g Eutrema salsugineum HOM05D006062 ORTHO05D007613 5.3e-19 97.1 57 80.7
Actinidia28267 Actinidia chinensis HOM05D006062 ORTHO05D007613 6.9e-19 96.7 57 78.9
Aa31LG11G12480 Aethionema arabicum HOM05D006062 ORTHO05D007613 6.9e-19 96.7 57 78.9
arahy.Tifrunner.gnm1.ann1.GUDI7G Arachis hypogaea HOM05D006062 ORTHO05D007613 6.9e-19 96.7 57 80.7
arahy.Tifrunner.gnm1.ann1.GZNV26 Arachis hypogaea HOM05D006062 ORTHO05D007613 6.9e-19 96.7 57 80.7
Duzib106G1742 Durio zibethinus HOM05D006062 ORTHO05D007613 6.9e-19 96.7 57 78.9
ATR0829G005 Amborella trichopoda HOM05D006062 ORTHO05D007613 9.0e-19 96.3 57 80.7
Aqoxy1G04105 Aquilegia oxysepala HOM05D006062 ORTHO05D007613 9.0e-19 96.3 57 82.5
Aqoxy3G02060 Aquilegia oxysepala HOM05D006062 ORTHO05D007613 9.0e-19 96.3 57 82.5
Duzib177G0391 Durio zibethinus HOM05D006062 ORTHO05D007613 9.0e-19 96.3 57 78.9
AL6G28220 Arabidopsis lyrata HOM05D006062 ORTHO05D007613 1.2e-18 95.9 57 78.9
AT5G17170 Arabidopsis thaliana HOM05D006062 ORTHO05D007613 1.2e-18 95.9 57 78.9
CARHR196050 Cardamine hirsuta HOM05D006062 ORTHO05D007613 1.2e-18 95.9 57 78.9
Manes.08G164800 Manihot esculenta HOM05D006062 ORTHO05D007613 1.2e-18 95.9 57 80.7
HPP92_025509 Vanilla planifolia HOM05D006062 ORTHO05D007613 1.2e-18 95.9 57 78.9
HPP92_025526 Vanilla planifolia HOM05D006062 ORTHO05D007613 1.2e-18 95.9 57 78.9
BcaC04g18827 Brassica carinata HOM05D006062 ORTHO05D007613 1.5e-18 95.5 57 78.9
GSVIVG01024454001 Vitis vinifera HOM05D006062 ORTHO05D007613 1.5e-18 95.5 56 80.4
Carub.0006s1536 Capsella rubella HOM05D006062 ORTHO05D007613 2.0e-18 95.1 57 78.9
CsaV3_5G005280 Cucumis sativus L. HOM05D006062 ORTHO05D007613 2.0e-18 95.1 57 78.9
ClCG01G005020 Citrullus lanatus HOM05D006062 ORTHO05D007613 2.6e-18 94.7 57 78.9
Gohir.D03G049700 Gossypium hirsutum HOM05D006062 ORTHO05D007613 2.6e-18 94.7 57 80.7
Gorai.003G051200 Gossypium raimondii HOM05D006062 ORTHO05D007613 2.6e-18 94.7 57 80.7
Os08g0162600 Oryza sativa ssp. japonica HOM05D006062 ORTHO05D007613 2.6e-18 94.7 57 80.7
Sed0000932 Sechium edule HOM05D006062 ORTHO05D007613 2.6e-18 94.7 57 80.7
VMungo0720G1055 Vigna mungo HOM05D006062 ORTHO05D007613 2.6e-18 94.7 57 77.2
CANSAT21G2164 Cannabis sativa HOM05D006062 ORTHO05D007613 3.4e-18 94.4 56 78.6
Gohir.A02G139100 Gossypium hirsutum HOM05D006062 ORTHO05D007613 3.4e-18 94.4 57 78.9
Phvul.002G037500 Phaseolus vulgaris HOM05D006062 ORTHO05D007613 3.4e-18 94.4 56 78.6
Ciclev10012505m.g Citrus clementina HOM05D006062 ORTHO05D007613 4.5e-18 94.0 56 82.1
Lalb_Chr05g0211331 Lupinus albus HOM05D006062 ORTHO05D007613 4.5e-18 94.0 57 77.2
LjContig00222g0021869 Lotus japonicus HOM05D006062 ORTHO05D007613 5.9e-18 93.6 57 75.4
BolC9t58838H Brassica oleracea HOM05D006062 ORTHO05D007613 1.3e-17 92.4 57 78.9
A10p22220 Brassica napus HOM05D006062 ORTHO05D007613 2.2e-17 91.7 54 77.8
BraA10t44281Z Brassica rapa HOM05D006062 ORTHO05D007613 2.2e-17 91.7 54 77.8
Cpa.g.sc39.53 Carica papaya HOM05D006062 ORTHO05D007613 5.0e-17 90.5 53 77.4
TPR.G37875 Trifolium pratense HOM05D006062 ORTHO05D007613 1.4e-16 89.0 58 75.9
MSTRG.26938 Avicennia marina HOM05D006062 ORTHO05D007613 2.5e-16 88.2 57 75.4
CDE02G0767 Ceratophyllum demersum HOM05D006062 ORTHO05D007613 3.2e-16 87.8 57 70.2
Medtr5g008050 Medicago truncatula HOM05D006062 ORTHO05D007613 4.2e-16 87.4 58 74.1
SalBow4G0173 Salvia bowleyana HOM05D006062 ORTHO05D007613 5.5e-16 87.0 59 74.6
Ca_24458_v3 Cicer arietinum L. HOM05D006062 ORTHO05D007613 7.2e-16 86.7 58 74.1
Ca_24464_v3 Cicer arietinum L. HOM05D006062 ORTHO05D007613 7.2e-16 86.7 58 74.1
SEGI_19152 Sequoiadendron giganteum HOM05D006062 ORTHO05D007613 2.7e-15 84.7 54 72.2
Psat2g187840 Pisum sativum HOM05D006062 ORTHO05D007613 1.0e-14 82.8 58 72.4
SMO140G0084 Selaginella moellendorffii HOM05D006062 ORTHO05D007613 1.9e-13 78.6 57 61.4
C09p60030 Brassica napus HOM05D006062 ORTHO05D007613 1.3e-12 75.9 42 78.6
Pp3c10_15730 Physcomitrium patens HOM05D006062 ORTHO05D007613 4.1e-11 70.9 57 54.4
Mapoly0041s0075 Marchantia polymorpha HOM05D006062 ORTHO05D007613 6.9e-11 70.1 57 57.9
CBR_g41690 Chara braunii HOM05D006062 ORTHO05D008129 1.0e-09 66.2 57 57.9


User provided reference genes

Program Settings