Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3A885T46 Lonicera japonica HOM05D004457 ORTHO05D005282 2.6e-186 655.2 328 100.0
TWI60G0869 Tripterygium wilfordii HOM05D004457 ORTHO05D005282 6.8e-134 481.1 328 72.6
Thecc.05G219000 Theobroma cacao HOM05D004457 ORTHO05D005282 2.6e-133 479.2 328 72.0
CSS0048555 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 4.9e-132 474.9 328 71.3
Actinidia34324 Actinidia chinensis HOM05D004457 ORTHO05D005282 7.0e-131 471.1 328 69.5
CSS0037309 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 2.0e-130 469.5 328 69.2
CSS0045385 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 2.7e-130 469.2 328 69.5
Actinidia08758 Actinidia chinensis HOM05D004457 ORTHO05D005282 1.0e-129 467.2 330 70.0
Cfa016064 Carpinus fangiana HOM05D004457 ORTHO05D005282 3.0e-129 465.7 328 71.0
Haze_00385 Corylus avellana HOM05D004457 ORTHO05D005282 8.6e-129 464.2 328 71.0
CiPaw.05G214800 Carya illinoinensis HOM05D004457 ORTHO05D005282 2.3e-126 456.1 335 69.0
Prupe.2G328100 Prunus persica HOM05D004457 ORTHO05D005282 6.8e-126 454.5 329 69.3
Cpa.g.sc43.116 Carica papaya HOM05D004457 ORTHO05D005282 8.9e-126 454.1 328 66.8
COL.COLO4_15192 Corchorus olitorius HOM05D004457 ORTHO05D005282 1.2e-125 453.8 329 69.9
Hma1.2p1_0419F.1_g149440 Hydrangea macrophylla HOM05D004457 ORTHO05D005282 1.5e-125 453.4 368 62.2
CSS0031792 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 2.6e-125 452.6 311 71.1
Manes.09G128300 Manihot esculenta HOM05D004457 ORTHO05D005282 3.4e-125 452.2 329 67.8
Potri.013G079201 Populus trichocarpa HOM05D004457 ORTHO05D005282 9.8e-125 450.7 329 68.4
PGR142G0056 Punica granatum HOM05D004457 ORTHO05D005282 1.7e-124 449.9 329 67.2
GSVIVG01024347001 Vitis vinifera HOM05D004457 ORTHO05D005282 1.7e-124 449.9 328 65.5
CiPaw.06G035200 Carya illinoinensis HOM05D004457 ORTHO05D005282 2.2e-124 449.5 328 68.6
Atru.chr12.1918 Acer truncatum HOM05D004457 ORTHO05D005282 2.9e-124 449.1 328 68.0
Nn6g33553 Nelumbo nucifera HOM05D004457 ORTHO05D005282 2.9e-124 449.1 328 66.5
THA.LOC104805712 Tarenaya hassleriana HOM05D004457 ORTHO05D005282 9.2e-123 444.1 328 68.3
Ciclev10021193m.g Citrus clementina HOM05D004457 ORTHO05D005282 6.0e-122 441.4 328 67.7
RcHm_v2.0_Chr1g0384491 Rosa chinensis HOM05D004457 ORTHO05D005282 7.8e-122 441.0 330 67.9
vmacro06531 Vaccinium macrocarpon HOM05D004457 ORTHO05D005282 1.3e-121 440.3 397 58.4
MD07G1310300 Malus domestica HOM05D004457 ORTHO05D005282 8.6e-121 437.6 331 67.7
CiPaw.06G035100 Carya illinoinensis HOM05D004457 ORTHO05D005282 4.3e-120 435.3 328 64.6
Gorai.003G055700 Gossypium raimondii HOM05D004457 ORTHO05D005282 4.3e-120 435.3 329 66.0
Gohir.A08G221660 Gossypium hirsutum HOM05D004457 ORTHO05D005282 7.3e-120 434.5 329 66.3
Gorai.004G256600 Gossypium raimondii HOM05D004457 ORTHO05D005282 7.3e-120 434.5 329 66.6
FvH4_7g34140 Fragaria vesca HOM05D004457 ORTHO05D005282 9.5e-120 434.1 330 67.3
Rhsim03G0223200 Rhododendron simsii HOM05D004457 ORTHO05D005282 9.5e-120 434.1 384 58.3
EL10Ac3g05054 Beta vulgaris HOM05D004457 ORTHO05D005282 1.2e-119 433.7 328 65.5
TAR375G0461 Trochodendron aralioides HOM05D004457 ORTHO05D005282 1.2e-119 433.7 328 66.2
Potri.013G079101 Populus trichocarpa HOM05D004457 ORTHO05D005282 1.6e-119 433.3 329 66.9
Gohir.A02G127500 Gossypium hirsutum HOM05D004457 ORTHO05D005282 2.1e-119 433.0 329 66.0
Gohir.D03G053500 Gossypium hirsutum HOM05D004457 ORTHO05D005282 2.8e-119 432.6 329 65.7
Gohir.D08G241200 Gossypium hirsutum HOM05D004457 ORTHO05D005282 2.8e-119 432.6 329 66.6
AT1G65020 Arabidopsis thaliana HOM05D004457 ORTHO05D005282 4.0e-118 428.7 328 66.2
AUR62028201 Chenopodium quinoa HOM05D004457 ORTHO05D005282 4.0e-118 428.7 328 65.2
Cc02_g00170 Coffea canephora HOM05D004457 ORTHO05D005282 4.0e-118 428.7 343 63.6
Aqoxy3G02297 Aquilegia oxysepala HOM05D004457 ORTHO05D005282 5.2e-118 428.3 328 63.7
Sp5g19410 Schrenkiella parvula HOM05D004457 ORTHO05D005282 5.2e-118 428.3 328 66.2
Eucgr.K00073 Eucalyptus grandis HOM05D004457 ORTHO05D005282 6.8e-118 427.9 332 64.8
AL2G19640 Arabidopsis lyrata HOM05D004457 ORTHO05D005282 4.4e-117 425.2 328 65.5
FAN10G1543 Fragaria x ananassa HOM05D004457 ORTHO05D005282 1.7e-116 423.3 343 64.4
Glyma.11G009300 Glycine max HOM05D004457 ORTHO05D005282 2.9e-116 422.5 328 62.8
MD01G1237700 Malus domestica HOM05D004457 ORTHO05D005282 4.9e-116 421.8 331 66.5
Nitab4.5_0004530g0100 Nicotiana tabacum HOM05D004457 ORTHO05D005282 6.4e-116 421.4 322 65.2
Lsat_1_v5_gn_8_3720 Lactuca sativa HOM05D004457 ORTHO05D005282 1.4e-115 420.2 328 64.9
Aa31LG2G2220 Aethionema arabicum HOM05D004457 ORTHO05D005282 9.2e-115 417.5 346 61.3
BraA02t06354Z Brassica rapa HOM05D004457 ORTHO05D005282 9.2e-115 417.5 338 63.0
Oeu062823.1 Olea europaea HOM05D004457 ORTHO05D005282 2.1e-114 416.4 330 63.3
Peaxi162Scf00516g00661 Petunia axillaris HOM05D004457 ORTHO05D005282 2.7e-114 416.0 304 68.8
Hund21100 Selenicereus undatus HOM05D004457 ORTHO05D005282 3.5e-114 415.6 328 63.4
ClCG09G017170 Citrullus lanatus HOM05D004457 ORTHO05D005282 4.6e-114 415.2 329 65.7
Thhalv10022467m.g Eutrema salsugineum HOM05D004457 ORTHO05D005282 7.8e-114 414.5 328 65.5
Glyma.01G233500 Glycine max HOM05D004457 ORTHO05D005282 1.0e-113 414.1 328 62.2
Carub.0002s1019 Capsella rubella HOM05D004457 ORTHO05D005282 1.3e-113 413.7 329 65.0
arahy.Tifrunner.gnm1.ann1.R5JYMV Arachis hypogaea HOM05D004457 ORTHO05D005282 2.3e-113 412.9 329 62.3
BolC2t08250H Brassica oleracea HOM05D004457 ORTHO05D005282 2.3e-113 412.9 338 62.4
BraA07t30901Z Brassica rapa HOM05D004457 ORTHO05D005282 2.3e-113 412.9 328 64.6
HanXRQChr04g0105271 Helianthus annuus HOM05D004457 ORTHO05D005282 5.1e-113 411.8 330 63.6
BcaB05g25319 Brassica carinata HOM05D004457 ORTHO05D005282 6.6e-113 411.4 329 64.4
arahy.Tifrunner.gnm1.ann1.9FAL4E Arachis hypogaea HOM05D004457 ORTHO05D005282 8.6e-113 411.0 329 62.0
CsaV3_3G050090 Cucumis sativus L. HOM05D004457 ORTHO05D005282 1.5e-112 410.2 328 62.5
Phvul.002G041000 Phaseolus vulgaris HOM05D004457 ORTHO05D005282 1.9e-112 409.8 328 62.5
C06p38960 Brassica napus HOM05D004457 ORTHO05D005282 2.5e-112 409.5 329 64.4
BolC6t38988H Brassica oleracea HOM05D004457 ORTHO05D005282 2.5e-112 409.5 329 64.4
CsaV3_2G036630 Cucumis sativus L. HOM05D004457 ORTHO05D005282 3.3e-112 409.1 329 64.4
Sed0007489 Sechium edule HOM05D004457 ORTHO05D005282 7.3e-112 407.9 328 61.0
Solyc03g097180.3 Solanum lycopersicum HOM05D004457 ORTHO05D005282 9.5e-112 407.5 328 62.5
C02p21100 Brassica napus HOM05D004457 ORTHO05D005282 4.7e-111 405.2 354 59.0
A02p12980 Brassica napus HOM05D004457 ORTHO05D005282 1.8e-110 403.3 364 58.5
VMungo1215G3184 Vigna mungo HOM05D004457 ORTHO05D005282 2.3e-110 402.9 328 61.3
PGSC0003DMG400003162 Solanum tuberosum HOM05D004457 ORTHO05D005282 6.8e-110 401.4 318 62.3
Nitab4.5_0000021g0740 Nicotiana tabacum HOM05D004457 ORTHO05D005282 1.2e-109 400.6 313 64.2
LjContig00222g0016666 Lotus japonicus HOM05D004457 ORTHO05D005282 2.6e-109 399.4 328 61.6
Sabra13G0073500 Salix brachista HOM05D004457 ORTHO05D005282 5.8e-109 398.3 311 63.0
Medtr5g007360 Medicago truncatula HOM05D004457 ORTHO05D005282 7.6e-109 397.9 322 60.2
Lalb_Chr09g0320121 Lupinus albus HOM05D004457 ORTHO05D005282 3.7e-108 395.6 329 62.0
PSO063G5530 Papaver somniferum HOM05D004457 ORTHO05D005282 6.4e-108 394.8 328 60.1
PSO782G5560 Papaver somniferum HOM05D004457 ORTHO05D005282 7.1e-107 391.3 328 59.5
Ca_24434_v3 Cicer arietinum L. HOM05D004457 ORTHO05D005282 4.6e-106 388.7 322 59.3
Sc13g0010930 Simmondsia chinensis HOM05D004457 ORTHO05D005282 7.8e-106 387.9 313 62.9
Psat2g189240 Pisum sativum HOM05D004457 ORTHO05D005282 3.0e-105 386.0 323 59.4
CAN.G1131.28 Capsicum annuum HOM05D004457 ORTHO05D005282 1.1e-104 384.0 307 61.9
A07p32750 Brassica napus HOM05D004457 ORTHO05D005282 1.5e-104 383.6 375 55.7
SalBow2G1767 Salvia bowleyana HOM05D004457 ORTHO05D005282 1.9e-104 383.3 330 58.5
MELO3C021859.2 Cucumis melo HOM05D004457 ORTHO05D005282 3.3e-104 382.5 297 66.0
TPR.G37899 Trifolium pratense HOM05D004457 ORTHO05D005282 8.1e-103 377.9 363 54.0
MSTRG.26922 Avicennia marina HOM05D004457 ORTHO05D005282 1.5e-101 373.6 331 57.4
SGA_v2.0_scaffold50G18449 Striga asiatica HOM05D004457 ORTHO05D005282 1.5e-101 373.6 366 53.8
MSTRG.8 Avicennia marina HOM05D004457 ORTHO05D005282 1.3e-100 370.5 330 57.0
FAN28G1138 Fragaria x ananassa HOM05D004457 ORTHO05D005282 1.9e-99 366.7 332 59.3
Peaxi162Scf00133g00612 Petunia axillaris HOM05D004457 ORTHO05D005282 1.6e-98 363.6 328 58.2
unitig_90.g27538 Utricularia gibba HOM05D004457 ORTHO05D005282 2.1e-98 363.2 327 57.5
Migut.F00082 Erythranthe guttata HOM05D004457 ORTHO05D005282 2.7e-98 362.8 330 56.7
Lj1A1034G49 Lonicera japonica HOM05D004457 ORTHO05D005282 6.0e-98 361.7 252 72.2
SalBow4G0372 Salvia bowleyana HOM05D004457 ORTHO05D005282 1.1e-96 357.5 324 57.1
SalBow4G0893 Salvia bowleyana HOM05D004457 ORTHO05D005282 1.5e-96 357.1 324 57.4
CiPaw.06G035000 Carya illinoinensis HOM05D004457 ORTHO05D005282 2.1e-95 353.2 288 63.2
Duzib106G1483 Durio zibethinus HOM05D004457 ORTHO05D005282 9.9e-93 344.4 328 57.0
Oeu015511.1 Olea europaea HOM05D004457 ORTHO05D005282 4.9e-92 342.0 329 55.9
SGA_v2.0_scaffold44G16903 Striga asiatica HOM05D004457 ORTHO05D005282 2.1e-90 336.7 350 50.6
ATR0665G122 Amborella trichopoda HOM05D004457 ORTHO05D005282 2.3e-89 333.2 329 51.7
Actinidia28413 Actinidia chinensis HOM05D004457 ORTHO05D005282 3.0e-89 332.8 237 67.9
PSO541G4777 Papaver somniferum HOM05D004457 ORTHO05D005282 3.0e-89 332.8 366 49.7
HPP92_001524 Vanilla planifolia HOM05D004457 ORTHO05D005282 1.9e-88 330.1 329 52.6
Zm00001eb024890 Zea mays HOM05D004457 ORTHO05D005282 2.5e-88 329.7 334 50.0
QL09p022526 Quercus lobata HOM05D004457 ORTHO05D005282 7.4e-88 328.2 228 68.9
FAN01G1413 Fragaria x ananassa HOM05D004457 ORTHO05D005282 6.2e-87 325.1 309 57.6
Nitab4.5_0004268g0020 Nicotiana tabacum HOM05D004457 ORTHO05D005282 3.4e-85 319.3 270 57.8
Cfa016063 Carpinus fangiana HOM05D004457 ORTHO05D005282 8.7e-81 304.7 329 52.6
Cfa016062 Carpinus fangiana HOM05D004457 ORTHO05D005282 8.4e-76 288.1 297 54.5
FAN25G0067 Fragaria x ananassa HOM05D004457 ORTHO05D005282 2.8e-71 273.1 333 51.7
Sed0022448 Sechium edule HOM05D004457 ORTHO05D005282 2.8e-71 273.1 213 65.3
PSO675G5198 Papaver somniferum HOM05D004457 ORTHO05D005282 6.3e-71 271.9 261 53.6
CARHR056470 Cardamine hirsuta HOM05D004457 ORTHO05D005282 5.3e-70 268.9 213 65.3
Haze_00386 Corylus avellana HOM05D004457 ORTHO05D005282 2.0e-69 266.9 294 49.7
Hund09804 Selenicereus undatus HOM05D004457 ORTHO05D005282 1.0e-68 264.6 313 48.6
FAN03G1923 Fragaria x ananassa HOM05D004457 ORTHO05D005282 3.6e-66 256.1 174 73.6
CDE02G1044 Ceratophyllum demersum HOM05D004457 ORTHO05D005282 1.3e-65 254.2 250 50.0
SEGI_39651 Sequoiadendron giganteum HOM05D004457 ORTHO05D005282 3.7e-63 246.1 328 40.9
AUR62002084 Chenopodium quinoa HOM05D004457 ORTHO05D005282 6.3e-63 245.4 328 46.0
Dinv29138 Davidia involucrata HOM05D004457 ORTHO05D005282 1.8e-57 227.3 148 77.7
ClCG09G013130 Citrullus lanatus HOM05D004457 ORTHO05D005282 1.8e-54 217.2 175 61.7
ECA233G5338 Erigeron canadensis HOM05D004457 ORTHO05D005282 1.2e-53 214.5 168 63.7
Gohir.A08G097750 Gossypium hirsutum HOM05D004457 ORTHO05D005282 5.5e-51 205.7 260 45.4
BolC4t27312H Brassica oleracea HOM05D004457 ORTHO05D005282 6.1e-50 202.2 165 62.4
ClCG09G013110 Citrullus lanatus HOM05D004457 ORTHO05D005282 1.4e-46 191.0 153 58.8
Sopen03g027920 Solanum pennellii HOM05D004457 ORTHO05D005282 3.1e-46 189.9 148 65.5
Dinv29137 Davidia involucrata HOM05D004457 ORTHO05D005282 8.5e-44 181.8 129 66.7
Nitab4.5_0000338g0060 Nicotiana tabacum HOM05D004457 ORTHO05D005282 2.7e-42 176.8 167 56.3
Migut.F00937 Erythranthe guttata HOM05D004457 ORTHO05D005282 3.6e-42 176.4 144 57.6
Pp3c11_5580 Physcomitrium patens HOM05D004457 ORTHO05D005282 3.1e-38 163.3 316 34.2
BcaC02g08145 Brassica carinata HOM05D004457 ORTHO05D005282 2.7e-34 150.2 123 61.0
Mapoly0043s0014 Marchantia polymorpha HOM05D004457 ORTHO05D005282 2.7e-34 150.2 316 32.3
AagrBONN_evm.TU.Sc2ySwM_228.2639 Anthoceros agrestis HOM05D004457 ORTHO05D005282 3.0e-33 146.7 226 35.0
ECA233G2641 Erigeron canadensis HOM05D004457 ORTHO05D005282 1.8e-30 137.5 121 58.7
SMO364G0318 Selaginella moellendorffii HOM05D004457 ORTHO05D005282 1.3e-28 131.3 216 32.9
Sopen03g027940 Solanum pennellii HOM05D004457 ORTHO05D005282 1.3e-28 131.3 121 54.5
Pp3c10_23490 Physcomitrium patens HOM05D004457 ORTHO05D005282 5.0e-28 129.4 319 31.0
DCAR_020421 Daucus carota HOM05D004457 ORTHO05D005282 6.5e-28 129.0 84 73.8
RcHm_v2.0_Chr7g0241921 Rosa chinensis HOM05D004457 ORTHO05D005282 7.8e-21 105.5 97 59.8
C07p33100 Brassica napus HOM05D004457 ORTHO05D005282 5.0e-20 102.8 75 65.3
BcaC06g34068 Brassica carinata HOM05D004457 ORTHO05D005282 1.1e-19 101.7 75 65.3
BolC9t54837H Brassica oleracea HOM05D004457 ORTHO05D005282 1.1e-19 101.7 75 65.3
Nitab4.5_0000845g0010 Nicotiana tabacum HOM05D004457 ORTHO05D005282 4.7e-18 96.3 121 46.3
MELO3C003309.2 Cucumis melo HOM05D004457 ORTHO05D005282 4.0e-17 93.2 87 58.6
Medtr3g091660 Medicago truncatula HOM05D004457 ORTHO05D005282 4.4e-16 89.7 88 50.0
Gohir.A08G102425 Gossypium hirsutum HOM05D004457 ORTHO05D005282 1.7e-15 87.8 67 61.2
CDE02G4136 Ceratophyllum demersum HOM05D004457 ORTHO05D005282 9.2e-14 82.0 78 52.6
arahy.Tifrunner.gnm1.ann1.383HND Arachis hypogaea HOM05D004457 ORTHO05D005282 7.8e-13 79.0 63 66.7
QL09p022513 Quercus lobata HOM05D004457 ORTHO05D005282 6.6e-12 75.9 57 64.9
Medtr3g091670 Medicago truncatula HOM05D004457 ORTHO05D005282 5.2e-09 66.2 63 61.9
QL03p072618 Quercus lobata HOM05D000132 ORTHO05D000058 1.2e-08 65.1 64 57.8


User provided reference genes

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