Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3A877T98 Lonicera japonica HOM05D004794 ORTHO05D005875 8.3e-191 670.2 346 100.0
HanXRQChr15g0477711 Helianthus annuus HOM05D004794 ORTHO05D005875 4.9e-151 538.1 346 80.9
Lsat_1_v5_gn_3_54000 Lactuca sativa HOM05D004794 ORTHO05D005875 5.1e-148 528.1 352 77.6
Dinv04904 Davidia involucrata HOM05D004794 ORTHO05D005875 3.3e-147 525.4 357 77.0
Actinidia31991 Actinidia chinensis HOM05D004794 ORTHO05D005875 5.6e-147 524.6 348 79.3
Dinv16165 Davidia involucrata HOM05D004794 ORTHO05D005875 2.1e-146 522.7 356 77.5
HanXRQChr01g0013251 Helianthus annuus HOM05D004794 ORTHO05D005875 2.6e-144 515.8 348 78.2
Nitab4.5_0013146g0030 Nicotiana tabacum HOM05D004794 ORTHO05D005875 5.8e-144 514.6 356 75.6
Nitab4.5_0000350g0140 Nicotiana tabacum HOM05D004794 ORTHO05D005875 2.9e-143 512.3 356 75.0
TAR374G0638 Trochodendron aralioides HOM05D004794 ORTHO05D005875 8.4e-143 510.8 336 78.6
PGSC0003DMG400030563 Solanum tuberosum HOM05D004794 ORTHO05D005875 1.9e-142 509.6 356 75.3
Hma1.2p1_0114F.1_g055470 Hydrangea macrophylla HOM05D004794 ORTHO05D005875 4.2e-142 508.4 351 75.2
Sopen05g004370 Solanum pennellii HOM05D004794 ORTHO05D005875 1.2e-141 506.9 356 75.3
Solyc05g008530.3 Solanum lycopersicum HOM05D004794 ORTHO05D005875 2.7e-141 505.8 356 75.0
Oeu029170.1 Olea europaea HOM05D004794 ORTHO05D005875 3.5e-141 505.4 357 73.9
vmacro01423 Vaccinium macrocarpon HOM05D004794 ORTHO05D005875 1.0e-140 503.8 360 74.4
Lj6A750T92 Lonicera japonica HOM05D004794 ORTHO05D005875 1.9e-139 499.6 377 73.7
MSTRG.13564 Avicennia marina HOM05D004794 ORTHO05D005875 3.3e-139 498.8 358 74.0
CSS0006530 Camellia sinensis var. sinensis HOM05D004794 ORTHO05D005875 3.3e-139 498.8 356 75.3
Nn4g24023 Nelumbo nucifera HOM05D004794 ORTHO05D005875 4.1e-137 491.9 355 74.1
CAN.G1489.14 Capsicum annuum HOM05D004794 ORTHO05D005875 9.0e-137 490.7 357 74.5
Peaxi162Scf00205g01022 Petunia axillaris HOM05D004794 ORTHO05D005875 2.2e-135 486.1 354 73.2
DCAR_007276 Daucus carota HOM05D004794 ORTHO05D005875 8.5e-135 484.2 269 91.8
Migut.E00392 Erythranthe guttata HOM05D004794 ORTHO05D005875 8.5e-135 484.2 360 72.8
ECA246G3704 Erigeron canadensis HOM05D004794 ORTHO05D005875 1.1e-134 483.8 279 87.5
PGR102G0643 Punica granatum HOM05D004794 ORTHO05D005875 1.9e-134 483.0 357 74.5
SalBow8G5373 Salvia bowleyana HOM05D004794 ORTHO05D005875 1.2e-133 480.3 354 70.9
Aqoxy5G03876 Aquilegia oxysepala HOM05D004794 ORTHO05D005875 1.6e-133 479.9 362 71.0
Cc11_g09270 Coffea canephora HOM05D004794 ORTHO05D005875 2.1e-133 479.6 361 72.0
TAR622G1294 Trochodendron aralioides HOM05D004794 ORTHO05D005875 1.0e-132 477.2 298 82.2
Cfa015814 Carpinus fangiana HOM05D004794 ORTHO05D005875 1.8e-132 476.5 359 73.3
Oeu048392.1 Olea europaea HOM05D004794 ORTHO05D005875 1.8e-132 476.5 385 67.8
GSVIVG01011805001 Vitis vinifera HOM05D004794 ORTHO05D005875 2.3e-132 476.1 354 73.2
QL01p003046 Quercus lobata HOM05D004794 ORTHO05D005875 5.1e-132 474.9 355 73.2
Sc04g0005890 Simmondsia chinensis HOM05D004794 ORTHO05D005875 1.9e-131 473.0 348 73.9
SGA_v2.0_scaffold376G50295 Striga asiatica HOM05D004794 ORTHO05D005875 1.3e-130 470.3 343 72.9
Atru.chr11.334 Acer truncatum HOM05D004794 ORTHO05D005875 1.7e-130 469.9 363 71.3
Manes.06G063100 Manihot esculenta HOM05D004794 ORTHO05D005875 1.7e-130 469.9 368 71.2
PSO445G0020 Papaver somniferum HOM05D004794 ORTHO05D005875 2.2e-130 469.5 322 77.3
Ciclev10015744m.g Citrus clementina HOM05D004794 ORTHO05D005875 3.7e-130 468.8 360 72.2
Atru.chr11.341 Acer truncatum HOM05D004794 ORTHO05D005875 4.8e-130 468.4 363 71.1
PSO170G3473 Papaver somniferum HOM05D004794 ORTHO05D005875 6.3e-130 468.0 343 73.5
Prupe.1G320000 Prunus persica HOM05D004794 ORTHO05D005875 6.3e-130 468.0 364 71.7
EL10Ac6g14275 Beta vulgaris HOM05D004794 ORTHO05D005875 1.1e-129 467.2 356 71.9
CiPaw.05G245300 Carya illinoinensis HOM05D004794 ORTHO05D005875 2.4e-129 466.1 361 72.0
Manes.14G109500 Manihot esculenta HOM05D004794 ORTHO05D005875 2.4e-129 466.1 314 78.0
Eucgr.B02866 Eucalyptus grandis HOM05D004794 ORTHO05D005875 3.1e-129 465.7 372 70.7
Lsat_1_v5_gn_4_15760 Lactuca sativa HOM05D004794 ORTHO05D005875 9.1e-129 464.2 352 73.0
TWI75G0950 Tripterygium wilfordii HOM05D004794 ORTHO05D005875 1.2e-128 463.8 355 72.4
FAN07G1519 Fragaria x ananassa HOM05D004794 ORTHO05D005875 1.5e-128 463.4 355 72.7
Thecc.02G215600 Theobroma cacao HOM05D004794 ORTHO05D005875 3.4e-128 462.2 366 70.8
Ca_23704_v3 Cicer arietinum L. HOM05D004794 ORTHO05D005875 5.9e-128 461.5 312 76.9
Ca_30211_v3 Cicer arietinum L. HOM05D004794 ORTHO05D005875 5.9e-128 461.5 312 76.9
FAN22G0499 Fragaria x ananassa HOM05D004794 ORTHO05D005875 7.7e-128 461.1 352 74.1
MD13G1032500 Malus domestica HOM05D004794 ORTHO05D005875 7.7e-128 461.1 368 69.6
MELO3C012288.2 Cucumis melo HOM05D004794 ORTHO05D005875 1.0e-127 460.7 354 71.5
ATR0691G049 Amborella trichopoda HOM05D004794 ORTHO05D005875 1.3e-127 460.3 309 78.0
FvH4_4g26390 Fragaria vesca HOM05D004794 ORTHO05D005875 1.3e-127 460.3 356 72.8
FAN12G0017 Fragaria x ananassa HOM05D004794 ORTHO05D005875 1.3e-127 460.3 356 72.8
FAN12G0914 Fragaria x ananassa HOM05D004794 ORTHO05D005875 1.3e-127 460.3 356 72.8
AUR62002773 Chenopodium quinoa HOM05D004794 ORTHO05D005875 2.2e-127 459.5 356 71.6
FAN17G0450 Fragaria x ananassa HOM05D004794 ORTHO05D005875 6.5e-127 458.0 352 73.6
Hund25018 Selenicereus undatus HOM05D004794 ORTHO05D005875 6.5e-127 458.0 354 71.5
Glyma.10G268000 Glycine max HOM05D004794 ORTHO05D005875 8.5e-127 457.6 319 77.4
MBI16_g29821_MAGBIO Magnolia biondii HOM05D004794 ORTHO05D005875 8.5e-127 457.6 366 69.9
MD16G1034600 Malus domestica HOM05D004794 ORTHO05D005875 8.5e-127 457.6 362 71.0
Phvul.007G034300 Phaseolus vulgaris HOM05D004794 ORTHO05D005875 1.1e-126 457.2 316 75.3
Psat6g222720 Pisum sativum HOM05D004794 ORTHO05D005875 1.4e-126 456.8 315 74.3
RcHm_v2.0_Chr4g0434021 Rosa chinensis HOM05D004794 ORTHO05D005875 1.4e-126 456.8 357 70.9
Gohir.A12G142300 Gossypium hirsutum HOM05D004794 ORTHO05D005875 2.5e-126 456.1 359 70.5
ClCG05G022340 Citrullus lanatus HOM05D004794 ORTHO05D005875 4.2e-126 455.3 356 70.5
Lalb_Chr02g0145631 Lupinus albus HOM05D004794 ORTHO05D005875 5.5e-126 454.9 302 77.2
Gorai.008G158400 Gossypium raimondii HOM05D004794 ORTHO05D005875 7.2e-126 454.5 361 70.4
TWI79G0577 Tripterygium wilfordii HOM05D004794 ORTHO05D005875 7.2e-126 454.5 357 72.0
CANSAT01G0565 Cannabis sativa HOM05D004794 ORTHO05D005875 9.4e-126 454.1 366 70.5
CsaV3_5G034760 Cucumis sativus L. HOM05D004794 ORTHO05D005875 9.4e-126 454.1 355 71.3
CDE06G2233 Ceratophyllum demersum HOM05D004794 ORTHO05D005875 1.2e-125 453.8 325 74.5
Gohir.D12G147200 Gossypium hirsutum HOM05D004794 ORTHO05D005875 1.6e-125 453.4 361 70.1
Ah.03g138420 Amaranthus hybridus HOM05D004794 ORTHO05D005875 2.1e-125 453.0 350 70.9
Sabra10G0086800 Salix brachista HOM05D004794 ORTHO05D005875 7.9e-125 451.1 253 88.5
Sabra10G0088400 Salix brachista HOM05D004794 ORTHO05D005875 7.9e-125 451.1 253 88.5
arahy.Tifrunner.gnm1.ann1.B80FEM Arachis hypogaea HOM05D004794 ORTHO05D005875 1.8e-124 449.9 334 72.5
Sed0004857 Sechium edule HOM05D004794 ORTHO05D005875 2.3e-124 449.5 350 69.4
Aa31sc79G60 Aethionema arabicum HOM05D004794 ORTHO05D005875 3.0e-124 449.1 289 80.3
Migut.L01019 Erythranthe guttata HOM05D004794 ORTHO05D005875 3.9e-124 448.7 353 68.8
Glyma.20G123100 Glycine max HOM05D004794 ORTHO05D005875 5.1e-124 448.4 319 76.5
THA.LOC104805049 Tarenaya hassleriana HOM05D004794 ORTHO05D005875 5.1e-124 448.4 281 82.6
Haze_00684 Corylus avellana HOM05D004794 ORTHO05D005875 6.7e-124 448.0 359 70.8
arahy.Tifrunner.gnm1.ann1.9SFQ4R Arachis hypogaea HOM05D004794 ORTHO05D005875 1.1e-123 447.2 334 71.9
Potri.010G117200 Populus trichocarpa HOM05D004794 ORTHO05D005875 1.1e-123 447.2 367 69.2
Sp2g12580 Schrenkiella parvula HOM05D004794 ORTHO05D005875 1.5e-123 446.8 279 82.8
Carub.0005s0009 Capsella rubella HOM05D004794 ORTHO05D005875 4.4e-123 445.3 279 82.8
HPP92_027135 Vanilla planifolia HOM05D004794 ORTHO05D005875 4.4e-123 445.3 299 76.6
Medtr1g109080 Medicago truncatula HOM05D004794 ORTHO05D005875 7.4e-123 444.5 311 73.6
BcaC06g31333 Brassica carinata HOM05D004794 ORTHO05D005875 9.7e-123 444.1 285 80.7
AT2G01110 Arabidopsis thaliana HOM05D004794 ORTHO05D005875 1.3e-122 443.7 279 82.4
HPP92_021566 Vanilla planifolia HOM05D004794 ORTHO05D005875 1.7e-122 443.4 299 76.3
BraA06t27340Z Brassica rapa HOM05D004794 ORTHO05D005875 2.2e-122 443.0 279 81.4
C07p31580 Brassica napus HOM05D004794 ORTHO05D005875 3.7e-122 442.2 279 81.4
AL5G10060 Arabidopsis lyrata HOM05D004794 ORTHO05D005875 4.8e-122 441.8 355 70.1
Os01g0501700 Oryza sativa ssp. japonica HOM05D004794 ORTHO05D005875 4.8e-122 441.8 282 81.6
BolC2t10997H Brassica oleracea HOM05D004794 ORTHO05D005875 8.2e-122 441.0 278 81.7
BolC7t43697H Brassica oleracea HOM05D004794 ORTHO05D005875 8.2e-122 441.0 279 81.4
BcaC03g16998 Brassica carinata HOM05D004794 ORTHO05D005875 1.1e-121 440.7 278 81.7
A06p44670 Brassica napus HOM05D004794 ORTHO05D005875 1.1e-121 440.7 279 81.0
CDE07G0253 Ceratophyllum demersum HOM05D004794 ORTHO05D005875 1.1e-121 440.7 260 85.4
Lj5g0022431 Lotus japonicus HOM05D004794 ORTHO05D005875 1.4e-121 440.3 320 72.8
BcaC06g34216 Brassica carinata HOM05D004794 ORTHO05D005875 1.8e-121 439.9 279 81.0
CARHR143660 Cardamine hirsuta HOM05D004794 ORTHO05D005875 1.8e-121 439.9 349 70.2
Duzib251G0273 Durio zibethinus HOM05D004794 ORTHO05D005875 2.4e-121 439.5 358 69.0
BcaB07g30424 Brassica carinata HOM05D004794 ORTHO05D005875 4.1e-121 438.7 278 82.0
C02p49070 Brassica napus HOM05D004794 ORTHO05D005875 6.9e-121 438.0 278 81.3
Zm00001eb009240 Zea mays HOM05D004794 ORTHO05D005875 9.1e-121 437.6 279 79.2
Lalb_Chr06g0165741 Lupinus albus HOM05D004794 ORTHO05D005875 2.0e-120 436.4 351 68.1
EL10Ac4g08742 Beta vulgaris HOM05D004794 ORTHO05D005875 2.6e-120 436.0 343 68.8
A02p31690 Brassica napus HOM05D004794 ORTHO05D005875 1.7e-119 433.3 256 86.3
BraA02t08175Z Brassica rapa HOM05D004794 ORTHO05D005875 1.7e-119 433.3 256 86.3
SalBow8G4147 Salvia bowleyana HOM05D004794 ORTHO05D005875 5.0e-119 431.8 384 62.5
HanXRQChr17g0567091 Helianthus annuus HOM05D004794 ORTHO05D005875 1.6e-117 426.8 354 66.4
DCAR_030186 Daucus carota HOM05D004794 ORTHO05D005875 1.0e-116 424.1 225 96.9
ECA234G2688 Erigeron canadensis HOM05D004794 ORTHO05D005875 3.0e-116 422.5 303 72.6
Rhsim12G0088300 Rhododendron simsii HOM05D004794 ORTHO05D005875 8.8e-116 421.0 345 67.0
COL.COLO4_20120 Corchorus olitorius HOM05D004794 ORTHO05D005875 1.5e-115 420.2 244 87.3
AUR62037257 Chenopodium quinoa HOM05D004794 ORTHO05D005875 2.6e-115 419.5 447 57.0
HPP92_020138 Vanilla planifolia HOM05D004794 ORTHO05D005875 1.1e-113 414.1 307 72.3
Duzib268G0539 Durio zibethinus HOM05D004794 ORTHO05D005875 1.4e-113 413.7 352 67.3
SEGI_17562 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 1.4e-113 413.7 277 76.9
Mapoly0010s0061 Marchantia polymorpha HOM05D004794 ORTHO05D005875 1.6e-109 400.2 283 73.1
AagrBONN_evm.TU.Sc2ySwM_368.2774 Anthoceros agrestis HOM05D004794 ORTHO05D005875 2.3e-108 396.4 274 73.4
SMO119G0095 Selaginella moellendorffii HOM05D004794 ORTHO05D005875 2.3e-108 396.4 251 78.9
Thhalv10000946m.g Eutrema salsugineum HOM05D004794 ORTHO05D005875 8.8e-108 394.4 279 76.3
Pp3c3_36440 Physcomitrium patens HOM05D004794 ORTHO05D005875 8.8e-108 394.4 273 73.3
Pp3c8_3800 Physcomitrium patens HOM05D004794 ORTHO05D005875 1.2e-107 394.0 275 74.5
CBR_g19219 Chara braunii HOM05D004794 ORTHO05D005875 2.0e-104 383.3 245 78.0
TPR.G4856 Trifolium pratense HOM05D004794 ORTHO05D005875 2.3e-100 369.8 265 71.3
Oeu022847.1 Olea europaea HOM05D004794 ORTHO05D005875 5.7e-99 365.2 291 69.4
PRCOL_00000588 Prasinoderma coloniale HOM05D004794 ORTHO05D005875 1.1e-97 360.9 260 66.9
Zm00001eb399680 Zea mays HOM05D004794 ORTHO05D005875 4.2e-94 349.0 279 66.7
MCO02G003 Micromonas commoda HOM05D004794 ORTHO05D005875 3.4e-91 339.3 251 68.9
Cre03.g145887 Chlamydomonas reinhardtii HOM05D004794 ORTHO05D005875 4.1e-89 332.4 257 66.1
unitig_8.g3987 Utricularia gibba HOM05D000722 ORTHO05D000590 5.0e-79 298.9 249 65.9
VMungo0720G1627 Vigna mungo HOM05D004794 ORTHO05D005875 2.8e-77 293.1 333 55.9
A09p23220 Brassica napus HOM05D004794 ORTHO05D005875 2.1e-61 240.4 155 79.4
BraA09t37925Z Brassica rapa HOM05D004794 ORTHO05D005875 1.1e-60 238.0 155 78.7
BcaC03g16992 Brassica carinata HOM05D004794 ORTHO05D005875 5.1e-55 219.2 150 74.0
BolC2t10985H Brassica oleracea HOM05D004794 ORTHO05D005875 5.1e-55 219.2 150 74.0
Cpa.g.sc65.92 Carica papaya HOM05D004794 ORTHO05D005875 1.0e-47 194.9 108 92.6
SEGI_30482 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 4.8e-37 159.5 102 81.4
SEGI_31512 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 8.1e-37 158.7 99 82.8
C09p29960 Brassica napus HOM05D004794 ORTHO05D039171 3.2e-33 146.7 121 64.5
SEGI_19547 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 1.5e-30 137.9 114 63.2
BcaC04g21603 Brassica carinata HOM05D004794 ORTHO05D039171 4.9e-26 122.9 102 68.6
unitig_8.g3988 Utricularia gibba HOM05D004794 ORTHO05D005875 2.8e-21 107.1 61 88.5
BolC9t55859H Brassica oleracea HOM05D004794 ORTHO05D005875 1.8e-20 104.4 64 84.4
Actinidia33630 Actinidia chinensis HOM05D004794 ORTHO05D055622 8.5e-10 68.9 80 52.5


User provided reference genes

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