Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3A877T94 Lonicera japonica HOM05D005473 ORTHO05D006543 1.2e-225 786.2 411 100.0
Dinv04903 Davidia involucrata HOM05D005473 ORTHO05D006543 3.7e-137 492.3 410 66.1
CSS0031478 Camellia sinensis var. sinensis HOM05D005473 ORTHO05D006543 1.4e-128 463.8 410 62.7
Hma1.2p1_0114F.1_g055460 Hydrangea macrophylla HOM05D005473 ORTHO05D006543 7.2e-125 451.4 407 62.9
vmacro01424 Vaccinium macrocarpon HOM05D005473 ORTHO05D006543 8.0e-124 448.0 410 62.0
MSTRG.875 Avicennia marina HOM05D005473 ORTHO05D006543 1.5e-122 443.7 410 60.2
TAR622G1045 Trochodendron aralioides HOM05D005473 ORTHO05D006543 4.4e-122 442.2 407 60.2
Rhsim12G0088500 Rhododendron simsii HOM05D005473 ORTHO05D006543 9.1e-120 434.5 453 56.5
GSVIVG01011804001 Vitis vinifera HOM05D005473 ORTHO05D006543 2.0e-119 433.3 409 60.1
CiPaw.05G245400 Carya illinoinensis HOM05D005473 ORTHO05D006543 3.5e-119 432.6 410 59.8
QL01p003042 Quercus lobata HOM05D005473 ORTHO05D006543 4.5e-119 432.2 409 59.4
Prupe.1G320100 Prunus persica HOM05D005473 ORTHO05D006543 5.9e-119 431.8 410 58.8
SalBow8G1667 Salvia bowleyana HOM05D005473 ORTHO05D006543 7.2e-117 424.9 410 59.0
Nn4g24024 Nelumbo nucifera HOM05D005473 ORTHO05D006543 4.0e-115 419.1 409 57.5
Haze_00685 Corylus avellana HOM05D005473 ORTHO05D006543 6.8e-115 418.3 431 55.5
Cc11_g09260 Coffea canephora HOM05D005473 ORTHO05D006543 3.4e-114 416.0 413 58.4
Cfa015813 Carpinus fangiana HOM05D000048 ORTHO05D000207 8.3e-113 411.4 410 56.6
Oeu059511.2 Olea europaea HOM05D005473 ORTHO05D006543 4.1e-112 409.1 392 59.2
Lsat_1_v5_gn_3_54040 Lactuca sativa HOM05D005473 ORTHO05D006543 5.4e-112 408.7 404 56.7
Dinv16166 Davidia involucrata HOM05D005473 ORTHO05D006543 7.0e-112 408.3 410 57.1
Solyc05g008520.3 Solanum lycopersicum HOM05D005473 ORTHO05D006543 4.5e-111 405.6 409 57.5
Ciclev10015542m.g Citrus clementina HOM05D005473 ORTHO05D006543 7.7e-111 404.8 403 56.8
CAN.G1489.13 Capsicum annuum HOM05D005473 ORTHO05D006543 1.7e-110 403.7 408 57.8
PGSC0003DMG400030516 Solanum tuberosum HOM05D005473 ORTHO05D006543 1.7e-110 403.7 409 57.2
Sopen05g004360 Solanum pennellii HOM05D005473 ORTHO05D006543 5.0e-110 402.1 409 57.2
Lj5g0028089 Lotus japonicus HOM05D005473 ORTHO05D006543 4.2e-109 399.1 414 55.1
CsaV3_5G034770 Cucumis sativus L. HOM05D005473 ORTHO05D006543 1.4e-107 394.0 409 54.0
arahy.Tifrunner.gnm1.ann1.GULV0C Arachis hypogaea HOM05D005473 ORTHO05D006543 1.8e-107 393.7 409 55.0
Gorai.009G342800 Gossypium raimondii HOM05D005473 ORTHO05D006543 6.8e-107 391.7 408 55.4
VMungo0720G0454 Vigna mungo HOM05D005473 ORTHO05D006543 6.8e-107 391.7 402 56.0
Potri.008G126400 Populus trichocarpa HOM05D005473 ORTHO05D006543 8.9e-107 391.3 405 54.8
Sabra08G0095200 Salix brachista HOM05D005473 ORTHO05D006543 8.9e-107 391.3 408 55.1
Gohir.D05G319500 Gossypium hirsutum HOM05D005473 ORTHO05D006543 2.0e-106 390.2 408 54.9
arahy.Tifrunner.gnm1.ann1.45PR62 Arachis hypogaea HOM05D005473 ORTHO05D006543 4.4e-106 389.0 410 55.4
Phvul.007G034400 Phaseolus vulgaris HOM05D005473 ORTHO05D006543 4.4e-106 389.0 391 57.3
Actinidia31990 Actinidia chinensis HOM05D005473 ORTHO05D006543 5.7e-106 388.7 366 62.0
Peaxi162Scf00205g01024 Petunia axillaris HOM05D000048 ORTHO05D006543 5.7e-106 388.7 384 59.1
Eucgr.K00649 Eucalyptus grandis HOM05D005473 ORTHO05D006543 7.5e-106 388.3 413 53.3
Sed0015008 Sechium edule HOM05D005473 ORTHO05D006543 7.5e-106 388.3 410 53.9
HanXRQChr15g0477691 Helianthus annuus HOM05D005473 ORTHO05D006543 9.8e-106 387.9 413 53.3
Atru.chr11.335 Acer truncatum HOM05D005473 ORTHO05D006543 1.3e-105 387.5 403 55.1
Thecc.02G215500 Theobroma cacao HOM05D005473 ORTHO05D006543 1.7e-105 387.1 407 53.8
ClCG05G022330 Citrullus lanatus HOM05D005473 ORTHO05D006543 2.2e-105 386.7 409 54.3
COL.COLO4_20121 Corchorus olitorius HOM05D005473 ORTHO05D006543 2.9e-105 386.3 410 54.6
ECA246G4292 Erigeron canadensis HOM05D005473 ORTHO05D006543 2.9e-105 386.3 409 55.0
Manes.14G109600 Manihot esculenta HOM05D005473 ORTHO05D006543 2.9e-105 386.3 408 54.9
TPR.G4908 Trifolium pratense HOM05D005473 ORTHO05D006543 1.1e-104 384.4 409 54.0
Glyma.20G123200 Glycine max HOM05D005473 ORTHO05D006543 3.2e-104 382.9 405 56.0
RcHm_v2.0_Chr4g0434011 Rosa chinensis HOM05D005473 ORTHO05D006543 3.2e-104 382.9 392 54.3
FvH4_4g26380 Fragaria vesca HOM05D005473 ORTHO05D006543 4.1e-104 382.5 409 51.6
FAN12G0751 Fragaria x ananassa HOM05D005473 ORTHO05D006543 5.4e-104 382.1 409 51.3
FAN12G1468 Fragaria x ananassa HOM05D005473 ORTHO05D006543 5.4e-104 382.1 409 51.3
FAN17G2750 Fragaria x ananassa HOM05D005473 ORTHO05D006543 5.4e-104 382.1 409 51.6
Sabra16G0274100 Salix brachista HOM05D005473 ORTHO05D006543 5.4e-104 382.1 408 54.4
Medtr1g109070 Medicago truncatula HOM05D005473 ORTHO05D006543 1.6e-103 380.6 414 53.9
FAN22G1873 Fragaria x ananassa HOM05D005473 ORTHO05D006543 2.7e-103 379.8 409 51.3
Migut.L01020 Erythranthe guttata HOM05D005473 ORTHO05D006543 4.6e-103 379.0 409 53.8
Gohir.A05G317600 Gossypium hirsutum HOM05D005473 ORTHO05D006543 1.0e-102 377.9 408 53.7
FAN07G2597 Fragaria x ananassa HOM05D005473 ORTHO05D006543 2.5e-101 373.2 409 50.9
Ca_30210_v3 Cicer arietinum L. HOM05D005473 ORTHO05D006543 5.6e-101 372.1 414 52.7
Cpa.g.sc65.93 Carica papaya HOM05D005473 ORTHO05D006543 2.8e-100 369.8 406 53.2
Psat6g222680 Pisum sativum HOM05D005473 ORTHO05D006543 2.3e-99 366.7 412 51.9
Lalb_Chr06g0165731 Lupinus albus HOM05D005473 ORTHO05D006543 5.2e-99 365.5 409 52.3
PGR119G2355 Punica granatum HOM05D005473 ORTHO05D006543 5.2e-99 365.5 407 52.6
Sc11g0003970 Simmondsia chinensis HOM05D005473 ORTHO05D006543 1.2e-98 364.4 388 53.6
Atru.chr11.342 Acer truncatum HOM05D005473 ORTHO05D006543 2.0e-98 363.6 387 54.5
Nitab4.5_0013146g0010 Nicotiana tabacum HOM05D005473 ORTHO05D006543 1.7e-97 360.5 328 63.4
CANSAT01G2653 Cannabis sativa HOM05D005473 ORTHO05D006543 5.4e-96 355.5 411 49.9
SGA_v2.0_scaffold50G18546 Striga asiatica HOM05D005473 ORTHO05D006543 7.0e-96 355.1 406 50.7
EL10Ac6g14276 Beta vulgaris HOM05D005473 ORTHO05D006543 1.6e-95 354.0 419 50.8
AUR62037258 Chenopodium quinoa HOM05D005473 ORTHO05D006543 1.1e-93 347.8 417 48.7
Aqoxy5G03875 Aquilegia oxysepala HOM05D005473 ORTHO05D006543 4.3e-93 345.9 410 49.3
MBI16_g29822_MAGBIO Magnolia biondii HOM05D005473 ORTHO05D006543 1.6e-92 344.0 400 50.2
AUR62002772 Chenopodium quinoa HOM05D005473 ORTHO05D006543 2.1e-92 343.6 388 50.8
Aa31LG7G6980 Aethionema arabicum HOM05D005473 ORTHO05D006543 3.7e-89 332.8 411 47.2
PSO017G4790 Papaver somniferum HOM05D005473 ORTHO05D006543 6.4e-89 332.0 413 49.6
MELO3C012289.2 Cucumis melo HOM05D005473 ORTHO05D006543 5.4e-88 328.9 330 56.1
AL2G30760 Arabidopsis lyrata HOM05D005473 ORTHO05D006543 7.1e-88 328.6 399 48.1
AL1G36530 Arabidopsis lyrata HOM05D005473 ORTHO05D006543 1.3e-86 324.3 403 46.9
A09p41740 Brassica napus HOM05D005473 ORTHO05D006543 1.3e-86 324.3 410 46.1
DCAR_023622 Daucus carota HOM05D005473 ORTHO05D006543 1.3e-86 324.3 345 54.5
AT1G22970 Arabidopsis thaliana HOM05D005473 ORTHO05D006543 1.7e-86 323.9 403 46.9
Potri.010G117100 Populus trichocarpa HOM05D005473 ORTHO05D006543 3.0e-86 323.2 332 56.3
Ah.03g138500 Amaranthus hybridus HOM05D005473 ORTHO05D006543 6.6e-86 322.0 411 45.7
BraA09t39663Z Brassica rapa HOM05D005473 ORTHO05D006543 1.1e-85 321.2 410 45.4
Ca_23703_v3 Cicer arietinum L. HOM05D005473 ORTHO05D006543 1.5e-85 320.9 414 47.3
PSO782G5692 Papaver somniferum HOM05D005473 ORTHO05D006543 3.3e-85 319.7 411 48.2
Thhalv10008033m.g Eutrema salsugineum HOM05D005473 ORTHO05D006543 1.6e-84 317.4 410 44.9
CARHR023350 Cardamine hirsuta HOM05D005473 ORTHO05D006543 2.1e-84 317.0 410 45.6
PSO478G0709 Papaver somniferum HOM05D005473 ORTHO05D006543 8.1e-84 315.1 413 48.4
Carub.0001s2247 Capsella rubella HOM05D005473 ORTHO05D006543 2.3e-83 313.5 403 45.2
C05p22180 Brassica napus HOM05D005473 ORTHO05D006543 2.0e-82 310.5 406 45.1
BcaB07g32295 Brassica carinata HOM05D005473 ORTHO05D006543 3.4e-82 309.7 412 45.1
Sp5g26320 Schrenkiella parvula HOM05D005473 ORTHO05D006543 3.4e-82 309.7 404 46.0
AT1G71150 Arabidopsis thaliana HOM05D005473 ORTHO05D006543 3.7e-81 306.2 402 45.8
BraA07t31315Z Brassica rapa HOM05D005473 ORTHO05D006543 5.4e-80 302.4 402 44.5
BolC5t30918H Brassica oleracea HOM05D005473 ORTHO05D006543 6.0e-79 298.9 413 43.3
BcaC05g26209 Brassica carinata HOM05D005473 ORTHO05D006543 1.0e-78 298.1 413 43.3
CARHR064450 Cardamine hirsuta HOM05D005473 ORTHO05D006543 5.1e-78 295.8 408 43.1
Sp1g20430 Schrenkiella parvula HOM05D005473 ORTHO05D006543 3.3e-77 293.1 403 43.9
TWI79G1332 Tripterygium wilfordii HOM05D005473 ORTHO05D006543 9.6e-77 291.6 393 45.8
CDE07G0910 Ceratophyllum demersum HOM05D005473 ORTHO05D006543 1.6e-76 290.8 403 42.7
Carub.0002s1804 Capsella rubella HOM05D005473 ORTHO05D006543 2.4e-75 287.0 401 43.6
Duzib268G1740 Durio zibethinus HOM05D005473 ORTHO05D006543 4.4e-74 282.7 306 53.6
BcaC08g46554 Brassica carinata HOM05D005473 ORTHO05D006543 3.8e-73 279.6 394 43.7
BcaB03g14874 Brassica carinata HOM05D005473 ORTHO05D006543 8.4e-73 278.5 333 48.9
THA.LOC104812031 Tarenaya hassleriana HOM05D005473 ORTHO05D006543 1.1e-72 278.1 345 48.1
BolC6t39580H Brassica oleracea HOM05D005473 ORTHO05D006543 1.9e-72 277.3 394 43.1
unitig_749.g14005 Utricularia gibba HOM05D005473 ORTHO05D006543 1.6e-71 274.2 315 52.7
ATR0691G101 Amborella trichopoda HOM05D005473 ORTHO05D006543 5.1e-70 269.2 407 42.3
HPP92_020137 Vanilla planifolia HOM05D005473 ORTHO05D006543 1.1e-67 261.5 405 44.0
Os05g0554500 Oryza sativa ssp. japonica HOM05D005473 ORTHO05D006543 1.1e-64 251.5 413 38.7
Zm00001eb295130 Zea mays HOM05D005473 ORTHO05D006543 5.4e-64 249.2 410 37.8
Actinidia33629 Actinidia chinensis HOM05D005473 ORTHO05D006543 7.1e-64 248.8 273 54.9
Thecc.02G215400 Theobroma cacao HOM05D005473 ORTHO05D006543 1.0e-62 245.0 242 56.2
Glyma.10G267900 Glycine max HOM05D005473 ORTHO05D006543 5.6e-61 239.2 269 53.2
Thhalv10018995m.g Eutrema salsugineum HOM05D005473 ORTHO05D006543 4.8e-60 236.1 297 49.5
Migut.O00950 Erythranthe guttata HOM05D005473 ORTHO05D006543 6.4e-57 225.7 235 54.9
A07p37530 Brassica napus HOM05D000048 ORTHO05D006543 1.2e-55 221.5 402 36.3
AT1G22980 Arabidopsis thaliana HOM05D005473 ORTHO05D006543 3.5e-55 219.9 391 37.1
Rhsim03G0134600 Rhododendron simsii HOM05D005473 ORTHO05D006543 1.0e-54 218.4 243 57.2
A01p19890 Brassica napus HOM05D005473 ORTHO05D006543 3.0e-54 216.9 245 50.2
HanXRQChr15g0477701 Helianthus annuus HOM05D005473 ORTHO05D006543 6.2e-52 209.1 397 37.8
AL1G36540 Arabidopsis lyrata HOM05D005473 ORTHO05D006543 6.9e-51 205.7 387 35.9
SEGI_09717 Sequoiadendron giganteum HOM05D005473 ORTHO05D006543 1.7e-49 201.1 382 36.1
PSO384G2466 Papaver somniferum HOM05D005473 ORTHO05D006543 2.6e-42 177.2 343 35.6
Duzib251G0055 Durio zibethinus HOM05D005473 ORTHO05D006543 4.5e-42 176.4 310 40.6
SMO202G0044 Selaginella moellendorffii HOM05D005473 ORTHO05D006543 7.4e-37 159.1 360 32.8
AagrBONN_evm.TU.Sc2ySwM_344.5342 Anthoceros agrestis HOM05D005473 ORTHO05D006543 4.5e-34 149.8 388 30.7
Hund25017 Selenicereus undatus HOM05D005473 ORTHO05D006543 3.2e-32 143.7 171 47.4
C06p45250 Brassica napus HOM05D005473 ORTHO05D006543 7.2e-32 142.5 195 45.6
Pp3c15_5840 Physcomitrium patens HOM05D005473 ORTHO05D006543 3.7e-28 130.2 483 25.7
Oeu036129.1 Olea europaea HOM05D005473 ORTHO05D006543 1.1e-27 128.6 156 54.5
C06p45240 Brassica napus HOM05D000048 ORTHO05D000207 1.8e-27 127.9 148 45.9
PSO339G4228 Papaver somniferum HOM05D005473 ORTHO05D006543 2.3e-22 110.9 412 26.0
CBR_g3993 Chara braunii HOM05D005493 ORTHO05D007154 9.1e-19 99.0 201 32.3
CAN.G572.16 Capsicum annuum HOM05D005473 ORTHO05D006543 1.8e-14 84.7 150 41.3
MSTRG.15906 Avicennia marina HOM05D005473 ORTHO05D006543 5.2e-14 83.2 60 70.0
MD13G1032300 Malus domestica HOM05D005473 ORTHO05D006543 9.7e-13 79.0 54 70.4
MD16G1034500 Malus domestica HOM05D005473 ORTHO05D006543 5.3e-11 73.2 54 66.7
PGR142G1573 Punica granatum HOM05D005473 ORTHO05D006543 3.5e-10 70.5 296 25.7
MCO05G366 Micromonas commoda HOM05D005473 ORTHO05D006543 8.8e-06 55.8 194 28.4


User provided reference genes

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