Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3A860G48 Lonicera japonica HOM05D005892 ORTHO05D007364 1.9e-237 825.5 420 100.0
CSS0032108 Camellia sinensis var. sinensis HOM05D005892 ORTHO05D007364 4.9e-177 624.8 415 78.8
GSVIVG01029940001 Vitis vinifera HOM05D005892 ORTHO05D007364 8.9e-171 604.0 426 74.4
Cfa020027 Carpinus fangiana HOM05D005892 ORTHO05D007364 1.2e-170 603.6 402 77.4
Hma1.2p1_1525F.1_g288970 Hydrangea macrophylla HOM05D005892 ORTHO05D007364 2.5e-165 585.9 378 80.2
TAR633G2239 Trochodendron aralioides HOM05D005892 ORTHO05D007364 4.0e-163 578.6 426 70.4
DCAR_026818 Daucus carota HOM05D005892 ORTHO05D007364 4.4e-162 575.1 421 72.4
QL07p036776 Quercus lobata HOM05D005892 ORTHO05D007364 4.4e-162 575.1 457 67.4
Ciclev10011749m.g Citrus clementina HOM05D005892 ORTHO05D007364 5.8e-162 574.7 414 71.7
CiPaw.10G017200 Carya illinoinensis HOM05D005892 ORTHO05D007364 7.5e-162 574.3 410 73.4
Atru.chr8.1369 Acer truncatum HOM05D005892 ORTHO05D007364 1.3e-161 573.5 409 73.6
Manes.08G033200 Manihot esculenta HOM05D005892 ORTHO05D007364 1.1e-160 570.5 418 71.5
Cpa.g.sc35.59 Carica papaya HOM05D005892 ORTHO05D007364 7.8e-159 564.3 426 72.5
HanXRQChr16g0527301 Helianthus annuus HOM05D005892 ORTHO05D007364 1.0e-158 563.9 417 73.4
PGR142G3547 Punica granatum HOM05D005892 ORTHO05D007364 1.3e-158 563.5 419 71.1
Thecc.05G104100 Theobroma cacao HOM05D005892 ORTHO05D007364 1.7e-158 563.1 403 72.7
RcHm_v2.0_Chr3g0475881 Rosa chinensis HOM05D005892 ORTHO05D007364 6.6e-158 561.2 400 73.2
Lsat_1_v5_gn_4_22820 Lactuca sativa HOM05D005892 ORTHO05D007364 8.6e-158 560.8 427 71.4
Cc11_g05910 Coffea canephora HOM05D005892 ORTHO05D007364 2.5e-157 559.3 419 74.0
COL.COLO4_29579 Corchorus olitorius HOM05D005892 ORTHO05D007364 3.3e-157 558.9 402 73.1
FAN14G3222 Fragaria x ananassa HOM05D005892 ORTHO05D007364 3.3e-157 558.9 400 73.2
Prupe.7G094800 Prunus persica HOM05D005892 ORTHO05D007364 4.3e-157 558.5 421 70.5
FAN05G3301 Fragaria x ananassa HOM05D005892 ORTHO05D007364 1.6e-156 556.6 400 72.8
Rhsim09G0086500 Rhododendron simsii HOM05D005892 ORTHO05D007364 2.1e-156 556.2 416 71.9
Potri.016G070700 Populus trichocarpa HOM05D005892 ORTHO05D007364 8.1e-156 554.3 400 70.8
Duzib093G2092 Durio zibethinus HOM05D005892 ORTHO05D007364 1.5e-154 550.1 399 72.4
Gorai.002G235400 Gossypium raimondii HOM05D005892 ORTHO05D007364 1.5e-154 550.1 400 71.5
Peaxi162Scf01139g00002 Petunia axillaris HOM05D005892 ORTHO05D007364 2.6e-154 549.3 422 70.4
Gohir.A01G201600 Gossypium hirsutum HOM05D005892 ORTHO05D007364 5.8e-154 548.1 397 71.3
Gohir.D01G191500 Gossypium hirsutum HOM05D005892 ORTHO05D007364 3.8e-153 545.4 400 71.0
Nitab4.5_0005476g0010 Nicotiana tabacum HOM05D005892 ORTHO05D007364 8.4e-153 544.3 422 69.7
Nitab4.5_0007165g0010 Nicotiana tabacum HOM05D005892 ORTHO05D007364 1.1e-152 543.9 422 69.4
MD14G1038600 Malus domestica HOM05D005892 ORTHO05D007364 2.4e-152 542.7 410 70.0
ECA234G1824 Erigeron canadensis HOM05D005892 ORTHO05D007364 1.2e-151 540.4 396 72.2
Glyma.19G026300 Glycine max HOM05D005892 ORTHO05D007364 1.5e-149 533.5 400 70.5
Eucgr.K02619 Eucalyptus grandis HOM05D005892 ORTHO05D007364 1.9e-149 533.1 437 66.8
Phvul.001G195400 Phaseolus vulgaris HOM05D005892 ORTHO05D007364 1.2e-148 530.4 397 70.0
Actinidia12433 Actinidia chinensis HOM05D005892 ORTHO05D007364 1.6e-148 530.0 366 77.3
Glyma.03G201900 Glycine max HOM05D005892 ORTHO05D007364 1.6e-148 530.0 402 69.9
Sabra16G0070800 Salix brachista HOM05D005892 ORTHO05D007364 4.7e-148 528.5 471 61.4
ClCG10G018360 Citrullus lanatus HOM05D005892 ORTHO05D007364 8.1e-148 527.7 425 67.3
MSTRG.13644 Avicennia marina HOM05D005892 ORTHO05D007364 5.8e-146 521.5 413 69.5
Ca_25808_v3 Cicer arietinum L. HOM05D005892 ORTHO05D007364 1.3e-145 520.4 415 66.5
PGSC0003DMG400006864 Solanum tuberosum HOM05D005892 ORTHO05D007364 1.7e-145 520.0 422 67.3
Sopen01g034280 Solanum pennellii HOM05D005892 ORTHO05D007364 8.4e-145 517.7 404 68.3
Migut.E00525 Erythranthe guttata HOM05D005892 ORTHO05D007364 1.9e-144 516.5 399 68.7
Lalb_Chr20g0111381 Lupinus albus HOM05D005892 ORTHO05D007364 1.9e-144 516.5 426 65.0
Sed0021278 Sechium edule HOM05D005892 ORTHO05D007364 3.2e-144 515.8 421 65.1
Lj1g0008745 Lotus japonicus HOM05D005892 ORTHO05D007364 5.4e-144 515.0 427 66.7
THA.LOC104816617 Tarenaya hassleriana HOM05D005892 ORTHO05D007364 5.4e-144 515.0 423 66.0
Solyc01g087230.3 Solanum lycopersicum HOM05D005892 ORTHO05D007364 9.3e-144 514.2 404 68.1
arahy.Tifrunner.gnm1.ann1.EHSJ8W Arachis hypogaea HOM05D005892 ORTHO05D007364 3.5e-143 512.3 397 68.0
Medtr7g106200 Medicago truncatula HOM05D005892 ORTHO05D007364 1.7e-142 510.0 424 66.0
Hma1.2p1_1525F.1_g288980 Hydrangea macrophylla HOM05D005892 ORTHO05D007364 2.3e-142 509.6 327 78.9
PSO339G5192 Papaver somniferum HOM05D005892 ORTHO05D007364 3.3e-141 505.8 424 64.9
Nn2g14624 Nelumbo nucifera HOM05D005892 ORTHO05D007364 1.1e-139 500.7 365 71.2
FvH4_6g20290 Fragaria vesca HOM05D005892 ORTHO05D007364 1.4e-139 500.4 341 76.0
SalBow2G2452 Salvia bowleyana HOM05D005892 ORTHO05D007364 1.8e-139 500.0 438 63.5
PSO384G1009 Papaver somniferum HOM05D005892 ORTHO05D007364 4.0e-139 498.8 426 63.8
Psat3g029200 Pisum sativum HOM05D005892 ORTHO05D007364 4.0e-139 498.8 400 64.5
Haze_20187 Corylus avellana HOM05D005892 ORTHO05D007364 1.9e-136 490.0 446 63.7
CARHR083520 Cardamine hirsuta HOM05D005892 ORTHO05D007364 2.7e-135 486.1 401 65.3
Thhalv10020833m.g Eutrema salsugineum HOM05D005892 ORTHO05D007364 8.7e-134 481.1 423 63.4
CAN.G219.4 Capsicum annuum HOM05D005892 ORTHO05D007364 1.6e-132 476.9 359 71.0
AL3G20290 Arabidopsis lyrata HOM05D005892 ORTHO05D007364 2.8e-132 476.1 369 67.8
BcaC01g06891 Brassica carinata HOM05D005892 ORTHO05D007364 1.2e-130 470.7 421 61.0
CDE02G2672 Ceratophyllum demersum HOM05D005892 ORTHO05D007364 1.2e-130 470.7 404 62.1
Sp3g07480 Schrenkiella parvula HOM05D005892 ORTHO05D007364 1.2e-130 470.7 421 62.5
AUR62036522 Chenopodium quinoa HOM05D005892 ORTHO05D007364 2.0e-130 469.9 414 60.4
BolC5t34536H Brassica oleracea HOM05D005892 ORTHO05D007364 2.6e-130 469.5 396 63.4
C03p43860 Brassica napus HOM05D005892 ORTHO05D007364 3.4e-130 469.2 421 60.8
BolC3t16654H Brassica oleracea HOM05D005892 ORTHO05D007364 4.5e-130 468.8 421 60.8
C05p58840 Brassica napus HOM05D005892 ORTHO05D007364 7.6e-130 468.0 396 63.1
FAN09G4751 Fragaria x ananassa HOM05D005892 ORTHO05D007364 9.9e-130 467.6 327 74.9
AUR62042262 Chenopodium quinoa HOM05D005892 ORTHO05D007364 1.3e-129 467.2 388 62.6
Carub.0003s0830 Capsella rubella HOM05D005892 ORTHO05D007364 2.9e-129 466.1 421 62.2
Aqoxy1G00010 Aquilegia oxysepala HOM05D005892 ORTHO05D007364 8.4e-129 464.5 446 57.4
BraA03t12793Z Brassica rapa HOM05D005892 ORTHO05D007364 1.1e-128 464.2 422 60.7
BraA05t22764Z Brassica rapa HOM05D005892 ORTHO05D007364 2.4e-128 463.0 414 61.1
A05p39800 Brassica napus HOM05D005892 ORTHO05D007364 1.2e-127 460.7 414 61.1
CsaV3_3G037930 Cucumis sativus L. HOM05D005892 ORTHO05D007364 2.7e-127 459.5 358 67.9
Ah.10g030320 Amaranthus hybridus HOM05D005892 ORTHO05D007364 6.0e-127 458.4 401 61.8
HPP92_001371 Vanilla planifolia HOM05D005892 ORTHO05D007364 6.0e-127 458.4 415 61.0
EL10Ac9g21147 Beta vulgaris HOM05D005892 ORTHO05D007364 7.9e-127 458.0 429 59.7
Sabra16G0073000 Salix brachista HOM05D005892 ORTHO05D007364 1.1e-125 454.1 438 59.6
SGA_v2.0_scaffold65G22109 Striga asiatica HOM05D005892 ORTHO05D007364 1.6e-124 450.3 414 61.6
A03p36220 Brassica napus HOM05D005892 ORTHO05D007364 2.1e-124 449.9 422 59.7
HPP92_001347 Vanilla planifolia HOM05D005892 ORTHO05D007364 3.7e-124 449.1 409 60.4
MBI19_g09306_MAGBIO Magnolia biondii HOM05D005892 ORTHO05D007364 4.8e-124 448.7 430 60.0
Os01g0263500 Oryza sativa ssp. japonica HOM05D005892 ORTHO05D007364 4.0e-123 445.7 405 60.2
MELO3C009537.2 Cucumis melo HOM05D005892 ORTHO05D007364 1.7e-121 440.3 408 60.0
AT3G09180 Arabidopsis thaliana HOM05D005892 ORTHO05D007364 1.1e-120 437.6 360 66.7
VMungo1383G1945 Vigna mungo HOM05D005892 ORTHO05D007364 7.1e-120 434.9 346 67.6
HPP92_001441 Vanilla planifolia HOM05D005892 ORTHO05D007364 7.9e-119 431.4 415 58.8
Zm00001eb156320 Zea mays HOM05D005892 ORTHO05D007364 1.0e-118 431.0 416 58.2
CDE04G0639 Ceratophyllum demersum HOM05D005892 ORTHO05D007364 4.1e-115 419.1 402 58.5
FAN05G1366 Fragaria x ananassa HOM05D005892 ORTHO05D007364 1.0e-113 414.5 372 63.2
Hund10710 Selenicereus undatus HOM05D005892 ORTHO05D007364 2.9e-113 412.9 326 67.8
TAR633G0738 Trochodendron aralioides HOM05D005892 ORTHO05D007364 6.5e-113 411.8 307 70.4
TPR.G14083 Trifolium pratense HOM05D005892 ORTHO05D007364 9.3e-112 407.9 334 65.6
Aa31LG3G1670 Aethionema arabicum HOM05D005892 ORTHO05D007364 4.6e-111 405.6 345 64.6
FAN05G3684 Fragaria x ananassa HOM05D005892 ORTHO05D007364 2.3e-110 403.3 284 75.4
arahy.Tifrunner.gnm1.ann1.PAXQ04 Arachis hypogaea HOM05D005892 ORTHO05D007364 2.2e-108 396.7 300 69.7
FAN05G0385 Fragaria x ananassa HOM05D005892 ORTHO05D007364 1.8e-107 393.7 284 74.6
unitig_52.g17290 Utricularia gibba HOM05D005892 ORTHO05D007364 7.7e-106 388.3 343 63.0
ATR0068G118 Amborella trichopoda HOM05D005892 ORTHO05D007364 6.3e-100 368.6 449 51.7
Sc07g0007600 Simmondsia chinensis HOM05D005892 ORTHO05D007364 2.4e-99 366.7 336 61.6
Zm00001eb348930 Zea mays HOM05D005892 ORTHO05D007364 1.1e-96 357.8 326 58.9
FAN02G1987 Fragaria x ananassa HOM05D005892 ORTHO05D007364 4.7e-87 325.9 369 52.8
RcHm_v2.0_Chr1g0331121 Rosa chinensis HOM05D005892 ORTHO05D007364 5.9e-74 282.3 212 68.9
BcaB04g18552 Brassica carinata HOM05D005892 ORTHO05D007364 7.0e-67 258.8 233 63.1
Pp3c15_4850 Physcomitrium patens HOM05D005892 ORTHO05D007364 5.0e-65 252.7 439 37.8
Mapoly0090s0009 Marchantia polymorpha HOM05D005892 ORTHO05D007364 1.2e-61 241.5 414 38.2
Peaxi162Scf00684g00585 Petunia axillaris HOM05D005892 ORTHO05D007364 2.6e-61 240.4 324 47.8
Nn2g14691 Nelumbo nucifera HOM05D005892 ORTHO05D007364 3.6e-55 219.9 150 80.0
RcHm_v2.0_Chr1g0331111 Rosa chinensis HOM05D005892 ORTHO05D007364 4.7e-55 219.5 130 86.9
AagrBONN_evm.TU.Sc2ySwM_228.2745 Anthoceros agrestis HOM05D005892 ORTHO05D007364 5.6e-48 196.1 425 32.7
Atru.chr9.699 Acer truncatum HOM05D005892 ORTHO05D007364 1.6e-47 194.5 126 79.4
Atru.chr9.700 Acer truncatum HOM05D005892 ORTHO05D007364 1.6e-26 124.8 104 65.4
BcaC05g29638 Brassica carinata HOM05D005892 ORTHO05D007364 3.9e-25 120.2 96 66.7
CSS0000115 Camellia sinensis var. sinensis HOM05D005892 ORTHO05D007364 5.1e-25 119.8 99 70.7
Hma1.2p1_1525F.1_g288960 Hydrangea macrophylla HOM05D005892 ORTHO05D007364 5.1e-25 119.8 95 74.7
Aa31sc80G50 Aethionema arabicum HOM05D005892 ORTHO05D007364 7.3e-24 115.9 90 67.8
TPR.G35563 Trifolium pratense HOM05D005892 ORTHO05D007364 8.1e-23 112.5 105 56.2
SEGI_21584 Sequoiadendron giganteum HOM05D005892 ORTHO05D007364 3.8e-20 103.6 113 41.6
HPP92_019993 Vanilla planifolia HOM05D002096 ORTHO05D002203 7.1e-19 99.4 153 41.2
CBR_g10855 Chara braunii HOM05D005892 ORTHO05D007364 8.7e-09 65.9 161 32.3
SEGI_07863 Sequoiadendron giganteum HOM05D005892 ORTHO05D007364 2.5e-08 64.3 82 45.1


User provided reference genes

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