Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3A854G74 Lonicera japonica HOM05D007103 ORTHO05D008948 3.0e-260 901.4 470 100.0
GSVIVG01010248001 Vitis vinifera HOM05D007103 ORTHO05D008948 9.6e-174 614.0 482 71.4
Dinv06214 Davidia involucrata HOM05D007103 ORTHO05D008948 9.9e-171 604.0 475 72.8
Manes.10G065901 Manihot esculenta HOM05D007103 ORTHO05D008948 1.9e-169 599.7 478 69.7
TWI74G0969 Tripterygium wilfordii HOM05D007103 ORTHO05D008948 3.2e-169 599.0 478 69.0
Rhsim04G0168800 Rhododendron simsii HOM05D007103 ORTHO05D008948 1.3e-167 593.6 519 66.3
MSTRG.2093 Avicennia marina HOM05D007103 ORTHO05D008948 1.4e-164 583.6 475 68.2
Cfa015108 Carpinus fangiana HOM05D007103 ORTHO05D008948 5.3e-164 581.6 476 68.9
TAR371G1171 Trochodendron aralioides HOM05D007103 ORTHO05D008948 1.5e-163 580.1 477 68.3
Prupe.1G342500 Prunus persica HOM05D007103 ORTHO05D008948 3.2e-161 572.4 489 67.5
Haze_01571 Corylus avellana HOM05D007103 ORTHO05D008948 7.1e-161 571.2 476 67.9
Sopen04g003720 Solanum pennellii HOM05D007103 ORTHO05D008948 1.3e-159 567.0 475 66.1
HanXRQChr14g0446891 Helianthus annuus HOM05D007103 ORTHO05D008948 2.3e-159 566.2 474 67.1
Solyc04g008560.3 Solanum lycopersicum HOM05D007103 ORTHO05D008948 6.7e-159 564.7 475 65.9
PGSC0003DMG400031375 Solanum tuberosum HOM05D007103 ORTHO05D008948 3.3e-158 562.4 475 65.7
Sabra08G0108900 Salix brachista HOM05D007103 ORTHO05D008948 1.1e-156 557.4 459 65.1
RcHm_v2.0_Chr4g0446051 Rosa chinensis HOM05D007103 ORTHO05D008948 1.2e-155 553.9 486 65.4
Thecc.02G296200 Theobroma cacao HOM05D007103 ORTHO05D008948 2.0e-155 553.1 478 64.6
Sed0022925 Sechium edule HOM05D007103 ORTHO05D008948 4.5e-155 552.0 479 64.1
CSS0049146 Camellia sinensis var. sinensis HOM05D007103 ORTHO05D008948 2.2e-154 549.7 463 67.2
Migut.E00576 Erythranthe guttata HOM05D007103 ORTHO05D008948 1.1e-153 547.4 500 62.2
CAN.G458.2 Capsicum annuum HOM05D007103 ORTHO05D008948 7.9e-152 541.2 417 69.5
Nitab4.5_0000129g0430 Nicotiana tabacum HOM05D007103 ORTHO05D008948 1.0e-151 540.8 476 64.3
QL03p041867 Quercus lobata HOM05D007103 ORTHO05D008948 1.0e-151 540.8 476 65.1
MELO3C005211.2 Cucumis melo HOM05D007103 ORTHO05D008948 1.4e-151 540.4 477 63.5
COL.COLO4_27515 Corchorus olitorius HOM05D007103 ORTHO05D008948 5.1e-151 538.5 467 62.7
Peaxi162Scf00329g00938 Petunia axillaris HOM05D007103 ORTHO05D008948 3.3e-150 535.8 473 64.5
PGR044G1063 Punica granatum HOM05D007103 ORTHO05D008948 2.8e-149 532.7 470 62.6
Glyma.05G135400 Glycine max HOM05D007103 ORTHO05D008948 4.1e-148 528.9 475 63.8
CsaV3_5G017430 Cucumis sativus L. HOM05D007103 ORTHO05D008948 5.3e-148 528.5 477 61.8
DCAR_030327 Daucus carota HOM05D007103 ORTHO05D008948 2.0e-147 526.6 477 61.2
Potri.008G143700 Populus trichocarpa HOM05D007103 ORTHO05D008948 5.9e-147 525.0 437 65.0
Nitab4.5_0007973g0020 Nicotiana tabacum HOM05D007103 ORTHO05D008948 3.8e-146 522.3 472 61.2
SGA_v2.0_scaffold127G33990 Striga asiatica HOM05D007103 ORTHO05D008948 1.1e-145 520.8 474 62.4
Nn3g18722 Nelumbo nucifera HOM05D007103 ORTHO05D008948 3.2e-145 519.2 455 64.8
Ciclev10005118m.g Citrus clementina HOM05D007103 ORTHO05D008948 7.2e-145 518.1 413 68.8
Eucgr.B02623 Eucalyptus grandis HOM05D007103 ORTHO05D008948 2.1e-144 516.5 470 62.8
CANSAT78G0644 Cannabis sativa HOM05D007103 ORTHO05D008948 7.9e-144 514.6 479 62.4
Gorai.002G168100 Gossypium raimondii HOM05D007103 ORTHO05D008948 1.4e-143 513.8 477 60.8
Gohir.D01G137900 Gossypium hirsutum HOM05D007103 ORTHO05D008948 1.8e-143 513.5 478 60.7
MD13G1010500 Malus domestica HOM05D007103 ORTHO05D008948 6.7e-143 511.5 486 62.6
Gohir.A01G145152 Gossypium hirsutum HOM05D007103 ORTHO05D008948 1.3e-141 507.3 478 60.3
arahy.Tifrunner.gnm1.ann1.U7H2Z0 Arachis hypogaea HOM05D007103 ORTHO05D008948 3.7e-141 505.8 476 62.6
arahy.Tifrunner.gnm1.ann1.CDY64E Arachis hypogaea HOM05D007103 ORTHO05D008948 1.1e-140 504.2 476 62.4
THA.LOC104805941 Tarenaya hassleriana HOM05D007103 ORTHO05D008948 4.1e-140 502.3 480 60.4
PSO478G2004 Papaver somniferum HOM05D007103 ORTHO05D008948 5.9e-139 498.4 474 59.7
unitig_8.g4025 Utricularia gibba HOM05D007103 ORTHO05D008948 2.2e-138 496.5 474 59.9
Ca_18212_v3 Cicer arietinum L. HOM05D007103 ORTHO05D008948 1.1e-137 494.2 473 60.3
FAN17G1256 Fragaria x ananassa HOM05D007103 ORTHO05D008948 1.8e-135 486.9 490 59.0
FAN07G2615 Fragaria x ananassa HOM05D007103 ORTHO05D008948 2.3e-135 486.5 489 58.5
FAN12G1264 Fragaria x ananassa HOM05D007103 ORTHO05D008948 2.3e-135 486.5 489 58.9
vmacro08589 Vaccinium macrocarpon HOM05D007103 ORTHO05D008948 2.2e-133 479.9 361 71.5
Psat7g086680 Pisum sativum HOM05D007103 ORTHO05D008948 4.8e-133 478.8 473 59.2
CDE08G0078 Ceratophyllum demersum HOM05D007103 ORTHO05D008948 6.3e-133 478.4 478 58.8
Sp2g13560 Schrenkiella parvula HOM05D007103 ORTHO05D008948 2.0e-131 473.4 492 60.8
ATR0618G149 Amborella trichopoda HOM05D007103 ORTHO05D008948 3.5e-131 472.6 481 57.4
Lsat_1_v5_gn_3_27560 Lactuca sativa HOM05D007103 ORTHO05D008948 4.5e-131 472.2 474 58.9
Lj4g0001083 Lotus japonicus HOM05D007103 ORTHO05D008948 5.9e-131 471.9 479 59.3
ECA246G2851 Erigeron canadensis HOM05D007103 ORTHO05D008948 1.3e-130 470.7 463 56.8
Carub.0005s0121 Capsella rubella HOM05D007103 ORTHO05D008948 5.0e-130 468.8 477 59.3
AL5G11410 Arabidopsis lyrata HOM05D007103 ORTHO05D008948 9.4e-129 464.5 482 58.7
HPP92_022082 Vanilla planifolia HOM05D007103 ORTHO05D008948 2.1e-128 463.4 476 59.0
Glyma.08G090600 Glycine max HOM05D007103 ORTHO05D008948 4.7e-128 462.2 410 62.9
Lalb_Chr13g0293061 Lupinus albus HOM05D007103 ORTHO05D008948 3.3e-126 456.1 474 57.2
Actinidia32355 Actinidia chinensis HOM05D007103 ORTHO05D008948 1.7e-125 453.8 331 74.6
Aa31LG2G7810 Aethionema arabicum HOM05D007103 ORTHO05D008948 4.5e-123 445.7 478 57.3
CiPaw.05G161900 Carya illinoinensis HOM05D007103 ORTHO05D008948 4.5e-123 445.7 323 72.1
MBI06_g12320_MAGBIO Magnolia biondii HOM05D007103 ORTHO05D008948 4.5e-123 445.7 317 74.4
ClCG01G007020 Citrullus lanatus HOM05D007103 ORTHO05D008948 7.2e-121 438.3 342 65.8
CARHR144820 Cardamine hirsuta HOM05D007103 ORTHO05D008948 9.4e-121 438.0 479 58.2
BcaC04g21529 Brassica carinata HOM05D007103 ORTHO05D008948 1.6e-120 437.2 483 57.1
C09p30690 Brassica napus HOM05D007103 ORTHO05D008948 2.1e-120 436.8 480 57.5
AT2G02148 Arabidopsis thaliana HOM05D007103 ORTHO05D008948 2.7e-120 436.4 486 57.6
BcaB07g30707 Brassica carinata HOM05D007103 ORTHO05D008948 6.1e-120 435.3 483 57.8
BolC9t55934H Brassica oleracea HOM05D007103 ORTHO05D008948 6.1e-120 435.3 481 57.4
Thhalv10004194m.g Eutrema salsugineum HOM05D007103 ORTHO05D008948 3.4e-118 429.5 486 56.4
BraA09t37988Z Brassica rapa HOM05D007103 ORTHO05D008948 7.5e-118 428.3 481 56.3
A09p23820 Brassica napus HOM05D007103 ORTHO05D008948 3.7e-117 426.0 481 56.3
Sc03g0005470 Simmondsia chinensis HOM05D007103 ORTHO05D008948 3.7e-117 426.0 463 54.9
TPR.G34765 Trifolium pratense HOM05D007103 ORTHO05D008948 4.1e-116 422.5 476 55.0
AUR62003469 Chenopodium quinoa HOM05D007103 ORTHO05D008948 4.5e-115 419.1 463 53.1
Aqoxy3G00022 Aquilegia oxysepala HOM05D007103 ORTHO05D008948 3.8e-114 416.0 495 52.1
Phvul.002G186800 Phaseolus vulgaris HOM05D007103 ORTHO05D008948 4.7e-112 409.1 469 52.2
FvH4_4g36300 Fragaria vesca HOM05D007103 ORTHO05D008948 2.9e-106 389.8 349 61.3
Ciclev10010767m.g Citrus clementina HOM05D007103 ORTHO05D008948 3.9e-106 389.4 251 77.3
AUR62017776 Chenopodium quinoa HOM05D007103 ORTHO05D008948 1.4e-103 380.9 434 51.8
Zm00001eb228800 Zea mays HOM05D007103 ORTHO05D008948 4.0e-103 379.4 413 52.5
EL10Ac6g15409 Beta vulgaris HOM05D007103 ORTHO05D008948 2.6e-102 376.7 543 45.3
FAN22G0934 Fragaria x ananassa HOM05D007103 ORTHO05D008948 1.3e-101 374.4 416 53.1
PSO017G4620 Papaver somniferum HOM05D007103 ORTHO05D008948 6.4e-101 372.1 401 53.4
VMungo0251G2627 Vigna mungo HOM05D007103 ORTHO05D008948 7.3e-97 358.6 389 54.8
SalBow2G1702 Salvia bowleyana HOM05D007103 ORTHO05D008948 1.4e-92 344.4 274 70.1
BcaB07g30709 Brassica carinata HOM05D007103 ORTHO05D008948 1.0e-90 338.2 455 48.6
Atru.chr11.1054 Acer truncatum HOM05D007103 ORTHO05D008948 1.9e-84 317.4 449 47.4
Mapoly0001s0015 Marchantia polymorpha HOM05D007103 ORTHO05D008948 1.1e-81 308.1 491 44.0
SEGI_34932 Sequoiadendron giganteum HOM05D007103 ORTHO05D008948 1.5e-81 307.8 367 50.1
Actinidia25204 Actinidia chinensis HOM05D007103 ORTHO05D008948 1.1e-76 291.6 184 78.8
SMO358G0481 Selaginella moellendorffii HOM05D007103 ORTHO05D008948 2.1e-75 287.3 477 38.6
Pp3c5_2140 Physcomitrium patens HOM05D007103 ORTHO05D008948 1.8e-71 274.2 502 40.0
Actinidia31381 Actinidia chinensis HOM05D007103 ORTHO05D008948 2.6e-70 270.4 406 46.6
Pp3c6_26300 Physcomitrium patens HOM05D007103 ORTHO05D008948 4.9e-69 266.2 502 38.8
AagrBONN_evm.TU.Sc2ySwM_368.3256 Anthoceros agrestis HOM05D007103 ORTHO05D008948 9.0e-55 218.8 223 50.2
CBR_g70721 Chara braunii HOM05D007103 ORTHO05D008948 3.8e-53 213.4 205 49.3
Cpa.g.sc2.105 Carica papaya HOM05D007103 ORTHO05D008948 4.9e-53 213.0 221 58.8
Medtr5g010860 Medicago truncatula HOM05D007103 ORTHO05D008948 2.8e-48 197.2 197 54.8
Pp3c6_29570 Physcomitrium patens HOM05D007103 ORTHO05D008948 2.5e-33 147.5 178 44.9
Lsat_1_v5_gn_3_133181 Lactuca sativa HOM05D003297 ORTHO05D004027 6.3e-32 142.9 175 50.9
Hund18263 Selenicereus undatus HOM05D007103 ORTHO05D008948 4.1e-23 113.6 204 40.7
Cpa.g.sc2.103 Carica papaya HOM05D007103 ORTHO05D008948 5.7e-17 93.2 66 68.2
Aa31LG1G6410 Aethionema arabicum HOM05D007103 ORTHO05D008948 1.2e-11 75.5 105 48.6
CAN.G166.15 Capsicum annuum HOM05D007103 ORTHO05D008948 1.2e-11 75.5 104 40.4
Medtr6g043130 Medicago truncatula HOM05D007103 ORTHO05D008948 7.5e-09 66.2 42 71.4


User provided reference genes

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