Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3A853G78 Lonicera japonica HOM05D007299 ORTHO05D009106 5.4e-145 517.7 273 100.0
Actinidia13749 Actinidia chinensis HOM05D007299 ORTHO05D009106 1.0e-71 274.2 263 58.9
Dinv13815 Davidia involucrata HOM05D007299 ORTHO05D009106 5.2e-71 271.9 245 60.8
PGR044G1966 Punica granatum HOM05D007299 ORTHO05D009106 4.9e-69 265.4 246 54.1
ECA246G3185 Erigeron canadensis HOM05D007299 ORTHO05D009106 1.6e-67 260.4 246 56.5
DCAR_023506 Daucus carota HOM05D007299 ORTHO05D009106 1.7e-66 256.9 290 52.1
Rhsim09G0078300 Rhododendron simsii HOM05D007299 ORTHO05D009106 1.7e-66 256.9 241 57.7
Lsat_1_v5_gn_3_34281 Lactuca sativa HOM05D007299 ORTHO05D009106 2.3e-66 256.5 259 55.6
GSVIVG01010231001 Vitis vinifera HOM05D007299 ORTHO05D009106 2.5e-65 253.1 238 60.5
TAR622G0038 Trochodendron aralioides HOM05D007299 ORTHO05D009106 4.3e-65 252.3 235 57.4
vmacro10889 Vaccinium macrocarpon HOM05D007299 ORTHO05D009106 7.3e-65 251.5 249 57.4
CANSAT78G0052 Cannabis sativa HOM05D007299 ORTHO05D009106 8.9e-63 244.6 246 52.4
Cfa015123 Carpinus fangiana HOM05D007299 ORTHO05D009106 1.3e-61 240.7 240 55.8
Nn3g18668 Nelumbo nucifera HOM05D007299 ORTHO05D009106 1.3e-61 240.7 248 52.8
MELO3C004425.2 Cucumis melo HOM05D007299 ORTHO05D009106 4.9e-61 238.8 221 56.6
Aqoxy3G04214 Aquilegia oxysepala HOM05D007299 ORTHO05D009106 1.9e-60 236.9 237 59.1
CiPaw.05G165900 Carya illinoinensis HOM05D007299 ORTHO05D009106 3.2e-60 236.1 247 53.8
HanXRQChr08g0209311 Helianthus annuus HOM05D007299 ORTHO05D009106 4.1e-60 235.7 251 57.0
PGSC0003DMG400031371 Solanum tuberosum HOM05D007299 ORTHO05D009106 4.1e-60 235.7 233 54.5
Atru.chr11.1092 Acer truncatum HOM05D007299 ORTHO05D009106 7.1e-60 235.0 220 59.1
TPR.G24986 Trifolium pratense HOM05D007299 ORTHO05D009106 1.2e-59 234.2 229 54.6
MD13G1009200 Malus domestica HOM05D007299 ORTHO05D009106 1.6e-59 233.8 231 56.3
MD16G1007200 Malus domestica HOM05D007299 ORTHO05D009106 2.7e-59 233.0 228 54.4
PSO384G1235 Papaver somniferum HOM05D007299 ORTHO05D009106 1.3e-58 230.7 240 54.6
Manes.10G068700 Manihot esculenta HOM05D007299 ORTHO05D009106 1.7e-58 230.3 248 51.6
QL03p042773 Quercus lobata HOM05D007299 ORTHO05D009106 1.7e-58 230.3 185 64.3
FAN07G2538 Fragaria x ananassa HOM05D007299 ORTHO05D009106 3.0e-58 229.6 255 54.1
Cpa.g.sc2.109 Carica papaya HOM05D007299 ORTHO05D009106 3.9e-58 229.2 227 54.2
FAN17G2059 Fragaria x ananassa HOM05D007299 ORTHO05D009106 3.9e-58 229.2 255 53.7
FAN22G0217 Fragaria x ananassa HOM05D007299 ORTHO05D009106 5.1e-58 228.8 256 53.1
MBI03_g22264_MAGBIO Magnolia biondii HOM05D007299 ORTHO05D009106 1.1e-57 227.6 260 49.6
Prupe.1G343500 Prunus persica HOM05D007299 ORTHO05D009106 1.1e-57 227.6 247 52.6
TWI77G0874 Tripterygium wilfordii HOM05D007299 ORTHO05D009106 1.1e-57 227.6 244 51.2
Nitab4.5_0000129g0380 Nicotiana tabacum HOM05D007299 ORTHO05D009106 3.3e-57 226.1 241 51.5
Sed0015300 Sechium edule HOM05D007299 ORTHO05D009106 4.3e-57 225.7 227 53.7
arahy.Tifrunner.gnm1.ann1.NVJW8G Arachis hypogaea HOM05D007299 ORTHO05D009106 9.5e-57 224.6 229 54.1
Ca_19013_v3 Cicer arietinum L. HOM05D007299 ORTHO05D009106 1.2e-56 224.2 235 53.2
FAN12G2175 Fragaria x ananassa HOM05D007299 ORTHO05D009106 1.2e-56 224.2 257 53.3
RcHm_v2.0_Chr4g0446201 Rosa chinensis HOM05D007299 ORTHO05D009106 1.6e-56 223.8 226 54.4
arahy.Tifrunner.gnm1.ann1.IBNY1Y Arachis hypogaea HOM05D007299 ORTHO05D009106 3.6e-56 222.6 231 53.7
FvH4_4g36440 Fragaria vesca HOM05D007299 ORTHO05D009106 3.6e-56 222.6 257 52.9
Glyma.11G099800 Glycine max HOM05D007299 ORTHO05D009106 3.6e-56 222.6 250 50.8
Cc11_g02600 Coffea canephora HOM05D007299 ORTHO05D009106 1.8e-55 220.3 273 47.6
Ciclev10005530m.g Citrus clementina HOM05D007299 ORTHO05D009106 2.3e-55 219.9 257 52.5
Lj3g0027807 Lotus japonicus HOM05D007299 ORTHO05D009106 1.2e-54 217.6 228 52.2
Eucgr.J01834 Eucalyptus grandis HOM05D007299 ORTHO05D009106 2.6e-54 216.5 228 51.8
PSO339G0795 Papaver somniferum HOM05D007299 ORTHO05D009106 3.4e-54 216.1 243 56.8
Migut.L00603 Erythranthe guttata HOM05D007299 ORTHO05D009106 9.9e-54 214.5 241 48.5
HPP92_025841 Vanilla planifolia HOM05D007299 ORTHO05D009106 2.2e-53 213.4 246 49.2
AUR62015163 Chenopodium quinoa HOM05D007299 ORTHO05D009106 2.9e-53 213.0 270 45.2
Psat7g177800 Pisum sativum HOM05D007299 ORTHO05D009106 3.7e-53 212.6 233 50.2
VMungo1127G0955 Vigna mungo HOM05D007299 ORTHO05D009106 3.7e-53 212.6 244 50.8
Glyma.12G025700 Glycine max HOM05D007299 ORTHO05D009106 6.4e-53 211.8 236 51.3
Potri.010G097400 Populus trichocarpa HOM05D007299 ORTHO05D009106 1.1e-52 211.1 250 53.2
CAN.G880.11 Capsicum annuum HOM05D007299 ORTHO05D009106 1.4e-52 210.7 232 52.6
Hund24259 Selenicereus undatus HOM05D007299 ORTHO05D009106 1.4e-52 210.7 267 43.1
Phvul.011G028100 Phaseolus vulgaris HOM05D007299 ORTHO05D009106 1.9e-52 210.3 243 49.4
Solyc04g008600.4 Solanum lycopersicum HOM05D007299 ORTHO05D009106 4.1e-52 209.1 241 52.7
Thecc.02G310600 Theobroma cacao HOM05D007299 ORTHO05D009106 4.1e-52 209.1 271 45.0
THA.LOC104820913 Tarenaya hassleriana HOM05D007299 ORTHO05D009106 9.2e-52 208.0 218 50.0
COL.COLO4_27652 Corchorus olitorius HOM05D002463 ORTHO05D002669 2.1e-51 206.8 237 48.5
CsaV3_2G003690 Cucumis sativus L. HOM05D007299 ORTHO05D009106 4.6e-51 205.7 221 54.8
ATR0618G188 Amborella trichopoda HOM05D007299 ORTHO05D009106 6.0e-51 205.3 223 50.2
Sabra10G0069800 Salix brachista HOM05D007299 ORTHO05D009106 1.0e-50 204.5 278 49.3
Sc21g0004170 Simmondsia chinensis HOM05D007299 ORTHO05D009106 1.0e-50 204.5 227 49.8
Sp3g01850 Schrenkiella parvula HOM05D007299 ORTHO05D009106 2.3e-50 203.4 226 48.7
Duzib268G1125 Durio zibethinus HOM05D007299 ORTHO05D009106 5.1e-50 202.2 271 43.2
A05p44300 Brassica napus HOM05D007299 ORTHO05D009106 8.6e-50 201.4 252 44.8
C09p75940 Brassica napus HOM05D007299 ORTHO05D009106 8.6e-50 201.4 254 45.3
BolC5t35063H Brassica oleracea HOM05D007299 ORTHO05D009106 8.6e-50 201.4 254 45.3
Thhalv10021242m.g Eutrema salsugineum HOM05D007299 ORTHO05D009106 8.6e-50 201.4 224 47.8
Aa31LG5G13290 Aethionema arabicum HOM05D007299 ORTHO05D009106 1.1e-49 201.1 228 47.4
Sopen04g003760 Solanum pennellii HOM05D007299 ORTHO05D009106 1.1e-49 201.1 233 53.2
AL3G12230 Arabidopsis lyrata HOM05D007299 ORTHO05D009106 4.3e-49 199.1 253 43.5
BraA06t23286Z Brassica rapa HOM05D007299 ORTHO05D009106 7.3e-49 198.4 253 45.8
AT3G02820 Arabidopsis thaliana HOM05D007299 ORTHO05D009106 1.2e-48 197.6 248 43.5
Carub.0003s0192 Capsella rubella HOM05D007299 ORTHO05D009106 3.6e-48 196.1 227 46.7
Lalb_Chr19g0139441 Lupinus albus HOM05D007299 ORTHO05D009106 4.7e-48 195.7 232 47.8
MSTRG.422 Avicennia marina HOM05D007299 ORTHO05D009106 8.1e-48 194.9 183 55.7
Gorai.005G151500 Gossypium raimondii HOM05D007299 ORTHO05D009106 6.8e-47 191.8 248 44.8
EL10Ac9g22867 Beta vulgaris HOM05D007299 ORTHO05D009106 2.0e-46 190.3 194 51.5
unitig_899.g15439 Utricularia gibba HOM05D005548 ORTHO05D007497 2.0e-46 190.3 197 51.8
Gohir.D02G135500 Gossypium hirsutum HOM05D007299 ORTHO05D009106 4.4e-46 189.1 255 45.5
Nitab4.5_0003882g0040 Nicotiana tabacum HOM05D007299 ORTHO05D009106 1.1e-44 184.5 238 46.2
Peaxi162Scf00329g00814 Petunia axillaris HOM05D007299 ORTHO05D009106 1.9e-44 183.7 236 46.6
CARHR076830 Cardamine hirsuta HOM05D007299 ORTHO05D009106 4.6e-43 179.1 227 43.6
SGA_v2.0_scaffold47G17515 Striga asiatica HOM05D007299 ORTHO05D009106 1.6e-40 170.6 235 45.5
Os02g0762200 Oryza sativa ssp. japonica HOM05D007299 ORTHO05D009106 2.8e-40 169.9 286 40.2
AagrBONN_evm.TU.Sc2ySwM_344.3308 Anthoceros agrestis HOM05D007299 ORTHO05D009106 1.9e-36 157.1 218 40.8
SEGI_39636 Sequoiadendron giganteum HOM05D007299 ORTHO05D009106 3.9e-34 149.4 226 40.3
Zm00001eb228900 Zea mays HOM05D007299 ORTHO05D009106 1.2e-30 137.9 158 48.7
Pp3c24_950 Physcomitrium patens HOM05D007299 ORTHO05D009106 1.5e-30 137.5 179 44.1
CDE04G3037 Ceratophyllum demersum HOM05D007299 ORTHO05D009106 2.0e-30 137.1 172 47.7
Mapoly0024s0064 Marchantia polymorpha HOM05D007299 ORTHO05D009106 5.1e-26 122.5 236 33.1
AUR62017615 Chenopodium quinoa HOM05D007299 ORTHO05D009106 2.8e-24 116.7 192 38.5
Gohir.A03G110900 Gossypium hirsutum HOM05D007299 ORTHO05D009106 2.6e-22 110.2 128 47.7
Ah.01g013250 Amaranthus hybridus HOM05D007299 ORTHO05D009106 2.2e-21 107.1 107 46.7
SMO339G0024 Selaginella moellendorffii HOM05D007299 ORTHO05D009106 3.8e-21 106.3 202 36.6
Oeu061722.1 Olea europaea HOM05D007299 ORTHO05D009106 6.5e-21 105.5 116 51.7
MCO03G157 Micromonas commoda HOM05D007299 ORTHO05D009106 6.5e-13 79.0 194 28.9
Glyma.14G178300 Glycine max HOM05D007299 ORTHO05D009106 1.1e-12 78.2 154 37.7
ClCG02G017080 Citrullus lanatus HOM05D007299 ORTHO05D009106 6.3e-08 62.4 94 42.6
Cre12.g512500 Chlamydomonas reinhardtii HOM05D007299 ORTHO05D009106 6.9e-07 58.9 81 37.0


User provided reference genes

Program Settings